Hymenobacter cellulosivorans: MUN80_19360
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Entry
MUN80_19360 CDS
T09419
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hcf
Hymenobacter cellulosivorans
Brite
KEGG Orthology (KO) [BR:
hcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hcf03016
]
MUN80_19360
Enzymes [BR:
hcf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MUN80_19360
Transfer RNA biogenesis [BR:
hcf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MUN80_19360
Prokaryotic type
tRNA splicing ligases
MUN80_19360
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
tRNA_NucTran2_2
Motif
Other DBs
NCBI-ProteinID:
UOQ51910
UniProt:
A0ABY4F5F9
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All DBs
Position
complement(4560571..4562013)
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AA seq
480 aa
AA seq
DB search
MITGNDLLSLGLKPGKWFKEALEHINTHALEGEALHAYLDTVKPAPEIPLLTQAVPFHEN
ISADSPVEQANIAYVRQSMQQLMRTPTVVAGAIMPDACPAGPLGTIPVGGIVVARNAIHP
GMHSADICCSVMLTNLGKTAPKSVLDAAQQITHFGPGGRPEGQQFALPAEIEAEFRANPF
LNSLRSLKFAHEHLGTQGDGNHFLYVGISRNTGDTVLVTHHGSRGPGAALYTQGMKVAER
FRQAISPETAPPNAWIPGNSEEGKQYWAALQTIRKWTKQNHQCLHEAIATELGAAVQQRF
WNEHNFVFRDGDLYYHAKGATPLDPKFMPDITGPRIIPLNMAQPILLVEGTTTENNLGFA
PHGAGRNLSRTRHKYSKIGQTKEELFAEETQGIDARFFFNQIDISELPSAYKDAGEVQRQ
IQAFNLATIVDEIRPYGCIMAGDWEQDAPWRKKKLAKAAAALEAQGAADSQADASALAEG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgattaccggtaatgatttattaagcctgggtttgaagcctggcaagtggtttaaagaa
gctctggagcatatcaatacgcacgccctggaaggcgaggccctgcacgcctatctcgat
acggtgaagcccgccccggaaattccgctgctaacccaggcggtgccctttcacgagaac
atcagcgccgactcccccgtggagcaggccaacattgcctacgtccggcagtcgatgcag
caactgatgcgcacgcccacggtggtggccggcgccatcatgcccgacgcctgcccggct
ggcccgctgggtacgattccggtcgggggcatcgtggtggcccgcaacgccattcacccc
ggtatgcacagcgccgacatctgctgctcggtgatgctaaccaatctgggaaaaacggcc
cccaaaagcgtgctggacgccgcccagcagattacccatttcggcccgggcggccgcccc
gagggccagcagtttgcgctgcctgccgaaattgaagccgaatttcgggctaacccgttt
ctcaactcgttgcgcagcctcaagtttgcccatgagcatctgggtactcagggcgacggc
aaccactttctttacgtgggcatttcgcgcaacaccggcgacacggtactcgtgactcac
cacggctcccggggccctggcgcggcattgtacacccagggtatgaaagtagccgaacga
ttccgccaagctatttcgcccgaaaccgccccgcccaacgcctggattcctggtaactcg
gaggaaggaaagcagtactgggccgcgctgcaaaccatccggaaatggaccaagcaaaat
caccagtgcctgcacgaggccattgccacggagctgggcgcggccgtgcagcagcggttc
tggaacgagcacaactttgtgtttcgcgacggcgacctgtactaccacgccaaaggcgcc
acgccgctcgacccgaaattcatgcccgacattaccggcccgcgcattattccgctgaac
atggcccagcccattctgctagtggaaggcacaactacggagaataacctgggctttgcg
ccccacggagccggccgcaatctaagccgcacccgccacaagtacagcaagattgggcaa
accaaggaagaactgtttgccgaagaaacccagggcatcgacgcccgattttttttcaac
cagattgatatttccgaactgcccagcgcctataaggatgccggggaagtacagcggcag
attcaggcgttcaacctggccaccatcgtagacgaaattcggccctacggctgcatcatg
gccggcgactgggagcaggacgcgccctggcgcaagaaaaagctggccaaagccgcggca
gctttagaagcgcagggcgctgctgattcgcaagcggatgcgtcggcgttggctgaaggt
tga
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