Hymenobacter cellulosivorans: MUN80_19585
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Entry
MUN80_19585 CDS
T09419
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hcf
Hymenobacter cellulosivorans
Pathway
hcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUN80_19585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcf03019
]
MUN80_19585
03009 Ribosome biogenesis [BR:
hcf03009
]
MUN80_19585
Enzymes [BR:
hcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MUN80_19585
Messenger RNA biogenesis [BR:
hcf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MUN80_19585
Ribosome biogenesis [BR:
hcf03009
]
Prokaryotic type
rRNA helicases
MUN80_19585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
RRP36
Motif
Other DBs
NCBI-ProteinID:
UOQ51953
LinkDB
All DBs
Position
complement(4610327..4612291)
Genome browser
AA seq
654 aa
AA seq
DB search
MEKVKFEELNLSEELQRAIAELGYEEASPIQTAAIPVLLEGKDVIGQAQTGTGKTAAFGI
PAIEGVDTNNRAVQVLILCPTRELAVQVSGEIQKLGKYKRGLAVVPIYGGQSYDRQFQAL
ERGVQIVIGTPGRVMDHLERGTLKLDQVKKIILDEADEMLDMGFRDDIEVVLSKMPEDRQ
TVFFSATMSKPIMELTKKYQTNPKIVKVNHQELTVTNIEQMYYEVRNPMKKDVLSRIIDM
YNLKSTIVFCNTKRMVDECVAELQARGYFADGLHGDMGQQQRQNTLDKFRKGTLEILVAT
DVAARGIDVENVEAVVNYDLPADEEYYVHRIGRTGRAGKLGKAFTFVSGRDIYKLRDIMR
YTKANIKQERIPSFEDVSEVKTTLFLAQIKEIIEKGKLEKYVARVQRLLDQEEEITSLDV
AAALLRMTMKEDKQAEKSLEVGRQQGAVRPGFTRLFVTMGKKDRVHPRDIVDLIAENTAL
TGSKVGDIALYDKFSFVEVPSEFAEEITTKLGRTSIQGRPVSFNIATPRQEGDAQQEGNT
RGPGGFGGGEDRPRRSFGERREGGFGGNRGGSYGERREGGFNRGGSSYGGNREGGYRGGN
SGGSSYGGGYKGNRDGGSSYGGGYKGKRDNDGGGFRGGNRSEGPAPRPRQDFDE
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagtaaaatttgaagagttaaatctctccgaggagctgcagcgcgccattgct
gagctcggctacgaagaagcatcccccatccaaacggccgccattccggttctgctcgag
ggcaaggacgtcattggccaggcccagaccggtaccggcaagaccgccgctttcggcatt
cccgccatcgagggcgtcgacaccaacaaccgcgccgtgcaggtgctgattctctgcccc
acccgcgaattggcggtgcaggtttcgggtgaaatccagaaactgggcaaatacaagcgt
ggtttggccgtggtgcccatctacggcgggcagagctacgaccggcagttccaggctctg
gagcgcggcgtgcagatcgtaatcggtacgcccggccgggtgatggaccacctggagcgc
ggtacgctgaagctggatcaggtaaagaaaatcatcctcgatgaggctgacgaaatgctc
gacatgggcttccgcgacgacatcgaggtggtactgagcaagatgcccgaagaccgccag
acggtgttcttctcggctacgatgagcaagccgattatggagctcaccaaaaagtaccag
accaacccgaaaatcgtaaaggttaaccaccaggaactgacggttaccaacatcgagcag
atgtactacgaggtgcgtaacccgatgaaaaaggacgttttgtcccgcatcatcgacatg
tacaacctgaagtccaccatcgtgttctgcaacacgaagcgcatggtcgacgagtgcgtg
gctgaactgcaggcccgcggctactttgccgacggtttgcacggcgacatgggccagcag
cagcgccagaatacgctcgacaagttccgcaagggcacgctcgaaatcctggttgctacc
gacgtagctgcccgcggtatcgacgtggagaacgtggaagctgtcgttaactacgacctg
cccgccgatgaggagtactacgtgcaccgcattggccgcacgggccgcgctggtaagctg
ggcaaggccttcaccttcgtgagtggccgcgacatctacaagctgcgcgacatcatgcgc
tacactaaggccaacatcaagcaggagcggattccgtcgtttgaggatgtgtcggaagtg
aaaaccacgctgttcctggcccagatcaaagaaatcattgagaagggcaagctggagaag
tacgttgcccgcgtgcagcgcctgcttgaccaggaagaagaaattacttccctcgacgtg
gccgccgctctgctgcgcatgacgatgaaggaggataagcaggccgaaaagagcctcgaa
gtaggtcgtcagcaaggtgccgtgcgccccggcttcacccgcctcttcgtcacgatgggc
aagaaagaccgggttcatccccgcgacatcgtggacctgattgccgaaaacaccgccctg
accggcagcaaagtcggtgacattgccctctacgacaagttcagcttcgtggaagtgcct
tcggagtttgccgaggaaatcacgaccaagctgggccgcacctcgattcagggtcgtccc
gtgtcattcaacattgctacgccccgccaggaaggtgatgcccagcaggaaggcaacacc
cgcggccccggtggcttcggtggcggtgaggaccgtccgcgccgcagcttcggcgagcgt
cgcgaaggcggcttcggtggtaaccgcggcggtagctacggtgagcgccgcgaaggcggc
ttcaaccgtggtggcagctcgtacggcggcaaccgggaaggtggctaccgcggcggtaac
agcgggggcagctcctacggcggcggctacaaaggcaaccgcgacgggggcagctcttat
ggcggtggctacaagggcaagcgcgacaatgatggtggcgggttccgcggcggcaaccgc
agcgaaggcccagcaccccgtccgcgtcaggatttcgacgaatag
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