Hemicordylus capensis (graceful crag lizard): 128322522
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Entry
128322522 CDS
T08891
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128322522 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcg03400
]
128322522 (MSH6)
DNA repair and recombination proteins [BR:
hcg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128322522 (MSH6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
PhoU_div
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
128322522
NCBI-ProteinID:
XP_053099900
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All DBs
Position
1:436721396..436768895
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AA seq
1331 aa
AA seq
DB search
MSRQSTLLSFFPKTVGKDGESGGSSHHNSPSSDAEGSTTASAMTKAHCSSGGGARAPVQS
DIYEYSPGDLVWAKLEGHPWWPCLVYEHPTEKSIFRGRGRASRIHVQFFDEPPSRGWVSV
RYVRPYTGSTGRDTQRGGMFYSSRPEIKRAMEQADAAIRKEKSERLELAVCDKPSESEEE
DEETEQVSDEGEDFDTSKEVKSRNKRAAGQQKHTGKTKRRRVVMDSDSENGGSDQDFKPY
EVSSDENSIGAGDSDTSEFDPERPAKAPRKKTQEIVIKPPQKENFKNNLPETPRREMNLS
SEIKCRLTSFAAPDFFDFRLSMNGGGGGGDHPTVWEHDKIEWLQDGKRKDGRRRRQNDPD
YDPSTIFVPEDYLKNCTPGMRKWWEIKSQNFDSVICYKVGKFYELYHMDAVVAVNKLGLE
FMKGTWAHAGFPEIAFDKFSNVLIQKGYKVVRVEQVETPEMMDARCKTLAHPTKFDRVVR
REVCRVISKGTQTYGILDADFSETHNRYLLCIKEKVDDSTGLLRTYGVCFIDTTVGKFHV
GQFLDDRHCSRLRTLLAHYPPVQILFERGNPSAETQKIFKGLLPSTVQEGLIAGSQFWNA
SRTLKTLLEEDYFQDKKNASGSHILPPVIRSMTAESDSLGLTPGENSELVLSALGGCVFY
LRKCIIDQELLSLAKFEEYVPVDVDVAKGTGSSSTFAKTSQRMVLDGVTLANLEVLQNGT
TGSMEGTLLEKIDTCCTPFGRRLLKQWICAPLCNPSAINDRLDAVEDLLNEAAKMSEIRD
LLKKLPDLERLLSKIHSIGSSLKNQNHPDNRAIFYEEPRYSKKKIIDFLSALEGFKVAAE
IISILEDLVDNFKSKTLKQIATTKSKDNTGCFPDLEAELKRWDAAFDHDVARKNGVVNPK
TGFDADYDKALEDISDVEERLRQYLEVQRERLGCKAMMYWGAGRNRYQMEISETAVPRDL
PDEYVMKSSRKGYKRYWTKDIEDMLNEITGAEERKDAAQRDCMKRLFYNFDKNSKDWQAA
VECIAVLDVLLCLARYSQECDGPLCRPEIVLPEKNTPPFLELRRSCHPCITKTLFSDDFI
PNDILIGPLGEMTDSQMKACCVLVTGPNMGGKSTLLRQAGLSVVMAQLGCYVPAESFRFT
PVDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLMDELGRGTATFDGTAIA
SAVVKELSETIRCRTMFSTHYHSLVEDYAHSPSVRLGHMACMVENECDDPSQETITFLYK
FIKGACPKSYGFNAAKLADIPEEIIKTGHKKARDFEKTTLALRAFRNLCWIAEGAPVARD
DLQKLVNMIQV
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccaaagcacactcctcagtttcttccccaagacggtgggcaaggacggcgaa
agcggcggcagcagccaccacaacagcccctccagcgacgccgagggctccaccacggcc
tcggcgatgaccaaagcccactgcagcagcggaggcggagcgagggcgccggtgcagagt
gacatctatgaatattcacctggtgatttggtttgggccaaacttgaaggtcatccttgg
tggccatgccttgtgtacgagcatccaacagaaaaatctattttccggggaagaggaaga
gcctctcgaatccacgtacagtttttcgatgaaccaccatcgaggggttgggttagtgtt
agatatgtaagaccgtatacaggctctactggtagggatacccagaggggaggtatgttt
tacagttcaaggcctgaaattaaaagagcaatggagcaggcagatgctgctataagaaaa
gagaaaagtgaacgacttgaactggcagtgtgtgacaaaccttcagaaagtgaggaagaa
gatgaagagacggagcaggtgagtgatgagggtgaggattttgacacatcaaaggaagtg
aaatctagaaataaaagggcagctgggcaacaaaaacatactggaaaaaccaaaagaaga
agagttgtcatggattcagacagtgaaaatgggggttcagatcaggactttaagccatat
gaagtcagcagtgatgaaaacagcattggagcaggtgacagtgacacttctgaatttgac
ccagaaagaccagctaaagctcctcgtaagaaaacacaggaaattgtaatcaagcctccc
cagaaggaaaactttaaaaacaacctacctgaaactcccagaagagagatgaatctttct
tctgaaatcaagtgtaggctaacatcttttgcagctcctgacttctttgattttcgacta
agcatgaatggaggagggggaggaggagaccatccaactgtgtgggagcatgataaaatt
gaatggctccaggatggtaaaaggaaagatggccgtaggagacggcaaaatgatccagat
tatgatccaagtactatttttgtgccagaggactaccttaaaaactgcaccccaggaatg
cggaagtggtgggaaatcaagagtcagaattttgattctgtgatttgctataaagttggt
aaattctatgagttgtaccacatggatgcagttgttgcagttaacaagctgggactggag
ttcatgaaaggtacttgggcccatgcaggcttcccagaaatcgcctttgacaaattctct
aatgtcttaatccagaaaggttacaaagttgtccgtgttgagcaggtggagactcctgag
atgatggatgcacgctgcaagaccttggctcacccaacaaaatttgacagagttgtgcgc
cgagaagtatgtagggtaatttcaaaagggacacaaacttacggtattctggatgctgac
ttttcggagacccacaacagatacctcctctgcataaaagagaaagtcgacgattctact
ggtctccttcgtacttatggggtatgcttcattgacacaacagtggggaagttccatgtt
ggtcagttcctggatgaccgccactgctcaaggcttcgaactcttttggctcattaccct
cccgtgcagattctttttgagcgggggaacccctctgcagaaacacaaaagatattcaaa
ggcttactgccgtctactgtgcaagagggcttgattgctggctctcagttctggaatgca
tccagaacactaaaaactctccttgaagaagactacttccaggacaagaagaatgcaagt
ggtagtcatattctacccccagtaatcagatccatgacagcagaaagtgactctctggga
ctaactcctggggagaacagtgagcttgtgctctctgctcttggtggatgtgttttctac
cttagaaaatgtattattgatcaggagcttttatcactggcaaaatttgaagaatatgtc
cctgtggatgttgatgttgcaaaaggaacagggtcaagtagcacctttgctaaaactagc
cagcggatggtgctggatggggtgactctagcaaatctggaagtcctacagaatggaacc
actggttcaatggaaggcacattgctggaaaagattgacacttgttgtacaccctttggc
aggagactcttgaaacagtggatctgtgcaccattgtgcaatccttccgctatcaatgac
cgcctggatgcagttgaagacctcttaaatgaggctgccaaaatgtctgaaatccgtgac
cttctgaaaaaactcccggaccttgaaagactcttgagcaaaatccacagtattggttca
tcccttaagaatcagaaccatccagacaacagggctattttttatgaggagcccaggtac
agcaagaagaagatcatagacttcttgtctgcacttgaaggatttaaagtagcagctgaa
attatctcaattttggaagaccttgtggataactttaaatccaaaacacttaagcaaata
gcaacaactaaatctaaagataatactggctgtttcccagacttggaagcagaattgaaa
aggtgggatgctgcttttgatcatgacgttgcacggaagaatggtgtggttaatccaaag
actgggtttgatgcggattatgataaagctcttgaggatataagtgatgtcgaggagcgc
cttcgtcagtatttggaagttcagcgtgaacgattaggctgcaaagccatgatgtattgg
ggagcaggcagaaatcgatatcagatggagatttcagagactgcagtgccccgggacttg
cctgatgaatatgtgatgaagtctagtagaaagggttacaagcgctactggaccaaagat
atagaggatatgttgaatgagatcactggcgctgaagagcgaaaggatgcagctcagaga
gactgtatgaaaaggttattctacaactttgataagaacagcaaagactggcaagccgca
gtagaatgcatcgcagtgttggatgtcttgctgtgcctcgcacgctatagtcaggaatgc
gatggaccattgtgccgacctgaaattgtgctgccggagaagaacactccaccctttctg
gagctcagacgttcatgccatccatgcattacgaaaactttattcagcgatgacttcatc
cctaacgatatcctgataggtcctctaggtgaaatgacagactcccagatgaaggcttgc
tgtgttctagtgactggcccaaacatgggaggaaaatctacactcctgagacaggctggc
ctctcagtggtaatggcccagctgggatgctatgttcctgctgaatctttcaggtttact
cctgttgacagagtatttaccagactaggggcttcggatagaattatgtcaggggagagt
acgttttttgttgagctgagcgagacttcaagtatacttcagcatgcaacagaacattcc
cttgttcttatggatgaactaggcagaggtacagctacttttgatggaacagctattgct
agtgcagttgtcaaagaactttcagagactatcaggtgtcgcacaatgttttcaacgcat
taccattctttagtagaggattatgcacacagtccctctgtgcggttgggacatatggcc
tgtatggtagaaaatgagtgtgatgatcctagccaagagaccatcaccttcctctacaaa
ttcattaaaggagcttgtcccaaaagctatggattcaatgctgcaaagcttgctgacatt
ccagaagaaattattaagaccggtcacaaaaaggccagagactttgagaaaactactctt
gccctgagagcattcaggaacctttgctggatagctgaaggagcaccagtagcccgagat
gatcttcagaagctagtaaacatgattcaggtttaa
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