Hemicordylus capensis (graceful crag lizard): 128323115
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Entry
128323115 CDS
T08891
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128323115 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128323115 (SMG7)
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128323115 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
128323115 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
128323115
NCBI-ProteinID:
XP_053101787
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All DBs
Position
4:complement(151767772..151889812)
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AA seq
1194 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTESKLGPAEAWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRSNPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KTQWGLSDFIKAFIKFHGHVYLSKNLEKLNPLREKLEEQFKRLLFQKTFNSQQLVHITVI
NLFQLHHLRDFSNETEQQSYSQDEQLCWTQLLALFMSFLGILCKCPLQNDYQEESLGSYP
LPALKVSMDWLKLRPSVFQETVVDERQYIWPWLISLLNSFQPQEEDLSCPNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQGITGDKEGQHRQIRQQRLVFTGKWIADNQPRLIQCENEV
GKLLFLTEIPELLLDEHSEAKQNLVLQEAPLTEPQFADGSPGLKSVLSTGRNLSSNCDTG
DKPMVTFKENIKPREVNREQGRSYLAKEVGRERRDYSKGITANKIDGKKDNNNKRKNETK
KCGMEKMQEAGKQNVAVQVKSQTELRKTPVSEARKTPVNQSPNQASNSQFIPIHHPGAFP
PLPSRPGFPPPAYVIPPPVAFSMSSGYTFPGGVSVPGTFLQPAAHAPAGNQVQAGKQSHI
PYSQQRPSGPGPMNQGPQQPPSSSQQPLASLPAQATAQSASQLQVQALAQQQQQQSPTKA
VQALGKSPPHHSGFQQYSQVDSSKQLWNPPQVQGPLGKIMPVKQPYYLQSQDPLKLFEQS
LQPPLLQQQQPLEKKMKPFPMEPYNQNPSEVKVPEFYWDSYGMADNRVVMAQQQANMDRR
GKRQQGVFRPEQDPVPRMGFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLG
PLASLPGRSLFKSLLEKPSDLMSQSSSFLSLTGFSLNQERYPSSMFNEVYGKNLNASTKT
EVTPSVAHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSV
PFSNFGPIGTPDNRDRRVADRWKTDKPAMGGFGLDYLPATSSSSQSSWHPASTPSSTWAA
HGPSIEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGAMNPPH
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgctttgcgctcagtatctccggcaggcagaagtcctgaaggctgacatgaca
gagtcgaagctgggtccagctgaagcttggacatccagacaggctttgcaggacttatac
cagaaaatgctagtaacagatttggagtatgcattggataaaaaggtggaacaagatctg
tggaatcatgcctttaaaaatcagatcacaactctacagggtcaagcaaaaaaccgatca
aatccaaatcggagtgaagttcaggcaaacctctctctgttcctagaggcagctagtggc
ttctacacacagctgctgcaggagctgtgcacagtgtttaatgtagacttgccctgtcgt
gtgaagtcctcccaactgggaattatcagcaataaacagacgcacaccagcgccattgtg
aagccacaatctagctcctgctcgtatatttgccagcactgccttgtccatcttggagac
attgctcgctacagaaatcagaccagccaggctgagtcctattacaggcatgcagcccag
cttgtcccctccaatggtcagccttataatcagctggctattctagcatcttccaaagga
gaccacctgaccacaattttctactactgcagaagcattgctgtgaagttccctttccca
gctgcctctactaatttacaaaaagcactttctaaagcactggaaagtcgtgatgaggtg
aagactcaatggggactatctgattttatcaaggcatttataaaattccacggtcatgta
tatctgagtaagaacttggagaaactgaaccctcttcgtgagaagttggaagagcagttc
aagaggctgctattccaaaaaaccttcaattcgcagcagctagtccacattaccgtcatc
aacctgtttcagttgcatcacttgcgagactttagcaatgaaacggagcagcaaagttac
agccaggatgaacagctctgttggacacagttgttggccctcttcatgtcttttcttgga
atcctgtgcaaatgtccactccagaatgattaccaggaagaatctttgggttcttacccc
cttcctgctctcaaagtctcaatggattggctgaagcttagacccagtgtatttcaggaa
actgtagttgatgaaagacaatacatttggccctggctgatttcccttctaaacagtttt
cagccccaagaggaagacctctcctgccctaatgccacccctcttccagaggagtttgag
ctgcaaggattcttagctctaagaccttccttcaggaacttggatttctccaaaggacac
caggggattacaggagacaaagaagggcagcatcggcaaatacggcaacagcgcctggtt
ttcacaggcaaatggattgctgacaaccagccaaggctgatccagtgtgaaaatgaggtc
gggaaactcctgtttttgacagagatcccagaattattacttgatgagcatagtgaagcc
aaacagaatcttgttctgcaggaagcaccccttacagagccacagtttgcagacgggagc
ccaggacttaagtcagtgttgtcaacaggtcgaaatctgagcagcaactgtgacacagga
gataagccaatggtgacattcaaagagaacattaaaccacgagaggtaaacagagagcaa
ggccgaagctatctagctaaggaagtgggtagggaaagaagggattatagcaaaggaata
acagccaataaaattgatgggaagaaggacaacaacaacaagaggaagaatgagaccaag
aaatgtggcatggaaaagatgcaggaagcagggaagcagaatgtggcagtacaggtaaaa
tctcagactgaactgaggaagactccagtgtctgaagccaggaaaacaccagtaaatcag
tctccaaatcaagccagcaactcccagttcatacccatccatcacccaggagctttccct
cctcttcccagccggccaggctttccacctccagcctacgttattcctcctcctgtggct
ttctctatgagctcgggatacactttcccaggaggcgtttctgtcccaggaacctttctt
cagcctgcagctcacgcacctgcaggaaaccaggtgcaagctgggaagcaatcccacatt
ccttacagccagcagcggccctctggaccaggcccaatgaaccagggacctcagcagcca
ccatcctcttctcaacagccgcttgcatccttaccagctcaggcaacagcacagtctgca
agccagttacaagtccaggctctggcccagcagcagcaacaacagtctcctacaaaagct
gtgcaggctttggggaagagccctccacatcactctggattccagcagtattcccaggtg
gactcatccaagcagctctggaaccctcctcaggtccaaggcccattggggaagatcatg
cctgtgaagcagccctactatcttcagagccaggaccccctaaaactgtttgaacagtca
ttgcagcctccccttctgcaacagcagcagcctctggaaaagaaaatgaagccttttccc
atggagccatataaccagaatccctcagaggtcaaggtgccagaattttactgggactcc
tatggcatggctgataaccgcgttgtgatggcacagcagcaagctaatatggaccgcaga
gggaaacgtcagcaaggagtcttccgcccagagcaggatccagtgcctaggatgggtttt
gaggaccccaagagctcccctctgcttcctccggacctgttaaagagtctggctgccttg
gaggaggaggaagagctgattttctctaatcctcccgatctttacccagctctgctgggg
cctctcgcctctcttcctggacgaagcctctttaaatcgctgctagagaaaccatcagat
ctgatgtctcagtcatcttctttcctgtcccttacaggcttctctctcaatcaggaaaga
tacccaagcagcatgttcaatgaggtgtatgggaaaaacctcaatgccagcacaaaaaca
gaggtcactccatcagtggcccatcaggagacttcactctactctctctttgaagggact
ccatggtctccctctcttccagccagctcagatcattcaacaccagctagtcagtctcct
cattcctctaacccaagcagcttgccaagctctcctccaactcacaaccacaattctgtt
ccgttctccaactttgggcccattgggacaccagacaacagggatcggagagtggcggat
cgatggaagactgataagccagcaatgggaggatttggcttggactatctcccagcaaca
tcctcctcctcacagagtagctggcacccagccagcactcccagcagtacctgggcagcc
catggcccatccatagaggactcatcagctgtccttatggagagcctgaagtctatctgg
tccagttccatgatgcatcctggaccttctgccttggagcagctgttgatgcagcagaag
cagaagcagcaacgtgggcaaggtgccatgaatccaccgcactga
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integrated database retrieval system
