Hemicordylus capensis (graceful crag lizard): 128323366
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Entry
128323366 CDS
T08891
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128323366 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hcg03041
]
128323366 (PRPF6)
Spliceosome [BR:
hcg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128323366 (PRPF6)
Complex C
U5 SnRNP specific factors
128323366 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_17
TPR_2
TPR_8
ARM_TT21_2nd
TPR_CcmH_CycH
T7SS_EccA1_N
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
128323366
NCBI-ProteinID:
XP_053102310
LinkDB
All DBs
Position
4:8803752..8852575
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AA seq
985 aa
AA seq
DB search
MAATAASSSGSSSSSGGTAAPAGSNAPGSGGGGASGLTASLTGTMNRKKKPFLGMPAPLG
YVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQAADDDDEDLNDT
NYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERREQREKEEIEKYRMERP
KIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFAKHLQSGEN
HTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMRKIGQARNTLMDMRLS
QVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASA
RLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIY
IRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVEL
WLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRA
NGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNAL
ECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAK
SKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTAR
VFMKSVKLEWVLGNIAAAQELCEEALRHYEDFPKLWMMKGQIEEQEELIERAREAYNQGL
KKCPSSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNQDLWLESVRLEYRAGLKNIA
NTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERK
ITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCEVS
KDISNWQRKIGEILVLVAAKIKNTF
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggccgccacggccgcttcttcttcgggctcttcctcctcctccggcggtaccgccgcg
ccggcaggctccaatgccccaggttcgggcggcggcggcgcctctggcctgacggcctcc
ctgacgggcaccatgaacaggaaaaagaagcccttcctgggcatgcctgctccgctgggc
tacgtgccgggcctgggccgcggtgctacaggttttaccacccgctcagatatcggtcct
gctcgagatgcaaatgaccctgtagatgatcgtcatgctcctccggggaaaagaaccgtt
ggggatcagatgaagaaaaaccaggcagcagatgatgatgatgaagatcttaacgacacc
aattatgatgagttcaatggatatgctggaagtctgttctccagtgggccttatgaaaaa
gatgacgaggaagcagatgcaatctatgctgctttggataagagaatggatgaaaggaga
aaagaaagaagggaacaacgtgagaaagaggagattgaaaagtaccgaatggaacggcca
aaaattcagcagcagttctcagatctgaaaagaaaactagctgaagtcaccgaggaggag
tggctaagcatccctgaagttggtgacgcaaggaacaaacgccaaaggaatccacgttat
gagaaattgactcctgttcctgacagcttctttgcgaaacacctgcagtcaggagagaat
catacatctgtggatccccggcaaacgcaatttggtggtctgaacacaccctatcctggg
ggcttaaacactccttatccaggaggaatgacacctgggctgatgacacctggaactggt
gagctggacatgaggaagattggacaagccaggaacacgctgatggacatgagactcagt
caggtatctgactctgtcagtggccaaactgtggtggatcccaagggctacctcactgac
ttgaattccatgattcccacacatggtggagatatcaatgatatcaagaaagcacgttta
cttctgaagtctgtgcgagagactaaccctcaccacccgccagcctggattgcttctgca
cgcttggaagaggtgactggcaaactgcaggtagctcgaaacctcatcatgaaagggaca
gaaatgtgtcccaagagtgaagatgtttggttggaagctgcccgcttgcagcctggagat
actgctaaagctgtggtggcccaggctgttcgccacctcccacagtcggtccggatttat
atcagagctgcagagttggagacagatatccgagcaaagaagcgcgtccttcgaaaagca
ttagagcatgttccaaactctgtccggttgtggaaggcagctgtggagttggaagagcca
gaagatgccaggatcatgcttagccgagcggtggaatgctgccctaccagtgtggaactg
tggcttgccctggcgaggctggaaacctatgaaaatgcccgtaaagtcttaaacaaggcc
cgtgagaacattccaacggacaggcacatctggatcacagctgccaagctggaggaggcc
aatgggaacactcagatggtggagaagatcattgaccgagccatcacctcattaagggct
aatggggtagaaataaaccgggagcaatggatccaggatgctgaggagtgtgataaagct
ggcagtgtggccacatgccaggcagtcatgagagcggtgattgggatcggaattgaagag
gaggaccggaagcacacctggatggaggatgcagatagttgtgttgcgcacaatgctctg
gagtgtgcccgggcaatctatgcttatgccttacaagttttccccagcaagaaaagcgtc
tggttgcgagcagcctattttgaaaagaatcatggaaccagggaatccttggaggctctc
cttcagagggctgtggctcactgccccaaagctgaagtcctctggctcatgggagccaag
tctaaatggcttgctggagacgtaccagctgcaaggagtatcttagctttggctttccag
gccaaccccaacagtgaagagatttggctggctgcagtgaagctggaatctgaaaataat
gaatatgaaagagcaaggaggttgttggcgaaggcccgtagcagtgccccaacagccagg
gtcttcatgaagtctgtcaaactcgagtgggtgctcgggaacatcgctgccgctcaggaa
ctttgtgaggaagccctgaggcactatgaagatttccccaagctgtggatgatgaaagga
cagatagaggagcaagaagaactgatcgaaagagctcgagaggcctacaaccaaggcctg
aagaaatgccccagctccatacccctttggctcttgctgtctaggctggaagagaaggtt
ggccaactcacacgagccagagccatcctggagaagtctcgtttaaagaacccaaagaac
caagacctgtggctggagtcggttcgattagaatacagagctggactgaagaacatcgct
aacacgctgatggccaaggcactgcaggagtgtcccaattctgggatcttgtggtcagaa
gcaatcttcctggaagccagacctcagaggaagaccaagagtgtggatgccctgaagaaa
tgtgagcacgatccccatgtgcttctggctgtggccaagttattctggagtgagcgcaaa
ataaccaaagctcgtgagtggtttcatcggacggtgaagatagattctgatctaggagat
gcctgggcttttttctataaatttgaactccagcatggaactgaggagcagcaggaagag
gtgaggaagcgctgcgaaaatgcagagccacgccacggagagctgtggtgcgaggtctcc
aaggacatcagcaactggcagaggaagatcggggagatcctggtgctggtggcagccaaa
atcaagaacaccttctag
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