KEGG   Hemicordylus capensis (graceful crag lizard): 128323366
Entry
128323366         CDS       T08891                                 
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
  KO
K12855  pre-mRNA-processing factor 6
Organism
hcg  Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hcg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128323366 (PRPF6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hcg03041]
    128323366 (PRPF6)
Spliceosome [BR:hcg03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    128323366 (PRPF6)
 Complex C
   U5 SnRNP specific factors
    128323366 (PRPF6)
SSDB
Motif
Pfam: PRP1_N TPR_14 TPR_19 HAT_PRP39_N TPR_16 Suf HAT_Syf1_CNRKL1_N HAT_PRP39_C TPR_17 TPR_2 TPR_8 ARM_TT21_2nd TPR_CcmH_CycH T7SS_EccA1_N ARM_TT21_C
Other DBs
NCBI-GeneID: 128323366
NCBI-ProteinID: XP_053102310
LinkDB
Position
4:8803752..8852575
AA seq 985 aa
MAATAASSSGSSSSSGGTAAPAGSNAPGSGGGGASGLTASLTGTMNRKKKPFLGMPAPLG
YVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQAADDDDEDLNDT
NYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERREQREKEEIEKYRMERP
KIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFAKHLQSGEN
HTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDMRKIGQARNTLMDMRLS
QVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASA
RLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIY
IRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVEL
WLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRA
NGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAHNAL
ECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAK
SKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTAR
VFMKSVKLEWVLGNIAAAQELCEEALRHYEDFPKLWMMKGQIEEQEELIERAREAYNQGL
KKCPSSIPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNQDLWLESVRLEYRAGLKNIA
NTLMAKALQECPNSGILWSEAIFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERK
ITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCEVS
KDISNWQRKIGEILVLVAAKIKNTF
NT seq 2958 nt   +upstreamnt  +downstreamnt
atggccgccacggccgcttcttcttcgggctcttcctcctcctccggcggtaccgccgcg
ccggcaggctccaatgccccaggttcgggcggcggcggcgcctctggcctgacggcctcc
ctgacgggcaccatgaacaggaaaaagaagcccttcctgggcatgcctgctccgctgggc
tacgtgccgggcctgggccgcggtgctacaggttttaccacccgctcagatatcggtcct
gctcgagatgcaaatgaccctgtagatgatcgtcatgctcctccggggaaaagaaccgtt
ggggatcagatgaagaaaaaccaggcagcagatgatgatgatgaagatcttaacgacacc
aattatgatgagttcaatggatatgctggaagtctgttctccagtgggccttatgaaaaa
gatgacgaggaagcagatgcaatctatgctgctttggataagagaatggatgaaaggaga
aaagaaagaagggaacaacgtgagaaagaggagattgaaaagtaccgaatggaacggcca
aaaattcagcagcagttctcagatctgaaaagaaaactagctgaagtcaccgaggaggag
tggctaagcatccctgaagttggtgacgcaaggaacaaacgccaaaggaatccacgttat
gagaaattgactcctgttcctgacagcttctttgcgaaacacctgcagtcaggagagaat
catacatctgtggatccccggcaaacgcaatttggtggtctgaacacaccctatcctggg
ggcttaaacactccttatccaggaggaatgacacctgggctgatgacacctggaactggt
gagctggacatgaggaagattggacaagccaggaacacgctgatggacatgagactcagt
caggtatctgactctgtcagtggccaaactgtggtggatcccaagggctacctcactgac
ttgaattccatgattcccacacatggtggagatatcaatgatatcaagaaagcacgttta
cttctgaagtctgtgcgagagactaaccctcaccacccgccagcctggattgcttctgca
cgcttggaagaggtgactggcaaactgcaggtagctcgaaacctcatcatgaaagggaca
gaaatgtgtcccaagagtgaagatgtttggttggaagctgcccgcttgcagcctggagat
actgctaaagctgtggtggcccaggctgttcgccacctcccacagtcggtccggatttat
atcagagctgcagagttggagacagatatccgagcaaagaagcgcgtccttcgaaaagca
ttagagcatgttccaaactctgtccggttgtggaaggcagctgtggagttggaagagcca
gaagatgccaggatcatgcttagccgagcggtggaatgctgccctaccagtgtggaactg
tggcttgccctggcgaggctggaaacctatgaaaatgcccgtaaagtcttaaacaaggcc
cgtgagaacattccaacggacaggcacatctggatcacagctgccaagctggaggaggcc
aatgggaacactcagatggtggagaagatcattgaccgagccatcacctcattaagggct
aatggggtagaaataaaccgggagcaatggatccaggatgctgaggagtgtgataaagct
ggcagtgtggccacatgccaggcagtcatgagagcggtgattgggatcggaattgaagag
gaggaccggaagcacacctggatggaggatgcagatagttgtgttgcgcacaatgctctg
gagtgtgcccgggcaatctatgcttatgccttacaagttttccccagcaagaaaagcgtc
tggttgcgagcagcctattttgaaaagaatcatggaaccagggaatccttggaggctctc
cttcagagggctgtggctcactgccccaaagctgaagtcctctggctcatgggagccaag
tctaaatggcttgctggagacgtaccagctgcaaggagtatcttagctttggctttccag
gccaaccccaacagtgaagagatttggctggctgcagtgaagctggaatctgaaaataat
gaatatgaaagagcaaggaggttgttggcgaaggcccgtagcagtgccccaacagccagg
gtcttcatgaagtctgtcaaactcgagtgggtgctcgggaacatcgctgccgctcaggaa
ctttgtgaggaagccctgaggcactatgaagatttccccaagctgtggatgatgaaagga
cagatagaggagcaagaagaactgatcgaaagagctcgagaggcctacaaccaaggcctg
aagaaatgccccagctccatacccctttggctcttgctgtctaggctggaagagaaggtt
ggccaactcacacgagccagagccatcctggagaagtctcgtttaaagaacccaaagaac
caagacctgtggctggagtcggttcgattagaatacagagctggactgaagaacatcgct
aacacgctgatggccaaggcactgcaggagtgtcccaattctgggatcttgtggtcagaa
gcaatcttcctggaagccagacctcagaggaagaccaagagtgtggatgccctgaagaaa
tgtgagcacgatccccatgtgcttctggctgtggccaagttattctggagtgagcgcaaa
ataaccaaagctcgtgagtggtttcatcggacggtgaagatagattctgatctaggagat
gcctgggcttttttctataaatttgaactccagcatggaactgaggagcagcaggaagag
gtgaggaagcgctgcgaaaatgcagagccacgccacggagagctgtggtgcgaggtctcc
aaggacatcagcaactggcagaggaagatcggggagatcctggtgctggtggcagccaaa
atcaagaacaccttctag

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