Hemicordylus capensis (graceful crag lizard): 128323367
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Entry
128323367 CDS
T08891
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hcg03000
]
128323367 (RC3H1)
04121 Ubiquitin system [BR:
hcg04121
]
128323367 (RC3H1)
Transcription factors [BR:
hcg03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
128323367 (RC3H1)
Ubiquitin system [BR:
hcg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128323367 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
zf-CCCH_4
FYVE
zf-RING_10
PaaA_PaaC
Baculo_IE-1
Vesi_VP2
zf-RING_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
128323367
NCBI-ProteinID:
XP_053102312
LinkDB
All DBs
Position
4:160976707..161091320
Genome browser
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IEHLPVNSALLQLVGAQVPEQQPITLRSGAEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPMSASLGQLNEVGLSSAAILSDE
GTVELPNRKPSALPNGIVSAGSAVTQLISRGTESSYDSALKPGKIDHLSSSAPGSPPDLL
ESVPKSSLSALPVNSHPVAPRGPADMPPISVGKQLQMVPRGSQLYPAQQADVFYPDPRGA
APPFEPPPYQPGVYYPTAQNSQCISRFVRPPPSVPEPGPPYLEHYPPYLQDRAPNSQYSA
QPQQYPPMGQPIYPPHYDSRRMYPPYQREEMVRGSPVPIEIPPPAVSPYVPETRDRYPQV
EGYYPVGPHLNQIRPHREPYGRPPPQPHPSLDDLHRRRKEIMAQLEERKVISPPPFAPSP
TLPPSFHTDEYMDEDLKIAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDIVAAGTVEM
VNIDSKGMRDQRLDLQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKTMYQNPGPMQAMT
VQGASTKPVNISDYSPYGTHSAWGGSPYSPHQNIPSQGRINERERASMSDVAGHGKPLPS
SEREQLRLELQQLNHQISQQTQLRGLEAVSNRLLLQREATALAGQPQPPPPPPKWPGMIS
SEQLSLELHQVEREIGKRTRELGMESQSSLDVKNKVGTSKQAENGQQSKVPTEDLALTFS
SDVPNGSTQTQENIGLLSNKAAALNLSEDTEGGGGDQDAQRTGATPASAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgccctatttgcacgcaaacc
tttgacgaaacaatccggaagcccatcagcctgggctgtggccacacagtctgcaagatg
tgcctgaacaagctccaccggaaggcatgcccctttgaccagaccactatcaacacagat
attgaacaccttcctgtgaattccgccttgctgcagcttgtgggtgctcaggtgccagaa
cagcagccaataaccctgcgcagtggtgctgaagataccaaacattatgaggaagccaag
aaatgtgtggaagagctagcattgtaccttaaaccactcagcagtgcgagaggtgtagga
ctgaacagcaccacccagagtgtactcagtcgacccatgcagaggaagcttgtgacttta
gtacactgtcagctagtggaagaagaaggtcggatcagggctatgcgtgcagcgcgatca
ttaggtgaaagaactgtcacagagctcatccttcagcatcagaatccccagcagctctct
tccaacctttgggctgcagtgagggcgcggggttgccaattccttggaccagcaatgcag
gaagaggccctcaagttggttcttctggctttggaagatggatctgctttgtctcggaag
gttttggttctctttgtggtacagaggttggagccacgatttcctcaggcttctaaaacc
agcattgggcatgttgtccagcttctttacagagcctcctgtttcaaggtgactaaacgt
gatgaggattcctccctgatgcagctgaaggaggagttccgaacatatgaagctctgagg
agagaacatgattcccagattgtgcaaattgctatggaggctggtttgcgcattgcccct
gatcagtggtcctcattgctatatggagaccagtcccataaatcccatatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacagagtgttcaggaactaaccattgct
ctccagcggactggtgatccagccaatctgaaccgtcttcgaccccacctagaactccta
gcaaatattgatcccagtccagatgccccaccacctacatgggaacagcttgagaatgga
ttggttgctgtgcggactgtggtacatggcctggttgattacatccagaatcacagcaag
aaaggagcagatcagcagcagcctcctcagcacagcaaatacaagacatatatgtgccgt
gacatgaaacaaagaggagggtgcccccgtggggccagctgtacctttgcacattcgcaa
gaagaactggaaaaatttcgtaagatgaataaacgcctggttcctcgaagacccatgagt
gcctcacttggccaactgaatgaagtgggcctatcatcagcagctatcctctcagatgaa
gggactgtggagttgcccaacagaaaaccctctgccttgccaaatgggattgtttcagcg
ggcagtgcagtgacgcaacttatctctcgcggaactgagtccagctatgattcagccctg
aagcccgggaaaatcgaccatcttagcagcagtgcccctggttcaccacctgacttactg
gaatctgttcccaagagttctctatctgccttacctgtgaactctcacccagtggccccc
cggggaccggcagacatgcctccgatatcagttggcaaacagctccagatggtaccacgg
ggctcccagttgtatcctgctcagcaagctgatgtgttttaccctgatccgcgaggagca
gctccaccatttgaaccccctccttatcaaccaggtgtatattatcctacagctcagaat
tcacagtgcatatctcgatttgtccgacctccaccatctgttcctgaacccggtcctcct
tatttagaacattacccaccatatcttcaagatcgtgcaccgaattctcagtacagcgca
caaccacagcaatatcctcctatgggacagcccatctaccctcctcactatgatagccgt
cgcatgtaccccccataccagcgggaagagatggtccgtggaagccccgtgcccattgaa
attcctccgccagctgtatcaccatatgtacctgaaacaagagacagatacccacaagtg
gaaggctactatccagtcggtccacatttgaatcagatcagacctcacagagagccttat
ggccggcctccccctcaacctcatcccagtctggatgatttgcaccgccgacgaaaggag
ataatggctcagctagaggagagaaaggtcatctccccacctccttttgcaccatcacca
actctgcccccctctttccacactgatgagtatatggatgaagatctgaaaatagcaggc
aaatataaaggaaacgattacagccagtattcaccctggtcgtgtgacaccattggctcc
tacattggaaccaaagatgcaaaacccaaagacattgtggcagcagggactgtggaaatg
gtgaacatagatagcaagggaatgcgagatcagcgattggatttgcaaagaagagcagct
gagacaggtgatgatgatcttatcccatttggagaccggcctaccgtatcaaggtttggc
gccatctcgcgtacatccaaaacgatgtatcagaaccctggtcccatgcaagccatgaca
gttcaaggagcttccactaaaccagtcaacatttcagattacagcccttatggaacacac
agtgcttggggaggctcaccatattcaccccatcaaaacataccttctcagggacgcatt
aatgagagggagagagcgtccatgtcagatgtggctggccatgggaagcctttgccatca
tccgagagggagcaacttcggcttgaactgcagcagctaaaccatcagattagccagcag
acacaactgcgaggactggaggctgttagtaacaggctgctgttgcagagggaggcgacc
gccttggcaggccaaccacagcccccaccgccaccacctaagtggcctggaatgatctca
agtgaacagctgagcttggagctacaccaggtggagagggaaatcgggaagagaacccgg
gagctgggcatggagagccaatcttcattggatgtgaaaaacaaagtgggtaccagtaag
caggcagaaaatgggcagcaaagcaaggtaccgacggaggaccttgcgctgacattcagc
agtgatgttccaaatggatcaactcaaacccaagaaaatattggcctcctttccaacaaa
gctgcagctctgaacttgtctgaagataccgaagggggaggaggtgaccaggatgcccag
aggacaggagcaacaccagcctctgctccttga
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integrated database retrieval system
