Hemicordylus capensis (graceful crag lizard): 128323606
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Entry
128323606 CDS
T08891
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04510
Focal adhesion
hcg04512
ECM-receptor interaction
hcg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128323606 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128323606 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128323606 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hcg00535
]
128323606 (COL9A3)
Proteoglycans [BR:
hcg00535
]
Extracellular matrix (ECM) proteoglycans
Others
128323606 (COL9A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128323606
NCBI-ProteinID:
XP_053103017
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All DBs
Position
4:complement(12771913..12858427)
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AA seq
675 aa
AA seq
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MAGFSALGILFLFQLLASSSAQRPGPRGPPGPRGPPGSSGKDGIDGEPGPPGLPGPPGPK
GALGKPGKAGDAGLPGLPGVDGLTGIDGPPGPNGPPGDRGAIGPSGPAGPAGKGLPGPPG
PPGPSGLPGGNGFQGPPGPSGLPGFTGPPGPPGPPGIPGVLPDGNGDLQCPALCPPGPPG
PPGIPGFKGHTGHKGEPGEVGKDGEKGAPGPPGPAGPMGSVGMQGPRGLRGLIGPVGPIG
DRGSIGFRGPPGLPGPPGKAGPRGDRGPQGFRGPKGDTGIPGPRGTLGTAGPLGEPGMPG
KDGRDGTPGLDGEKGDAARFGVPGEKGPNGLPGLPGRAGTKGEKGQLGSSGEMGESGPSG
EPGIPGDRGIPGERGESGPRGSSGALGLQGPMGAPGVRGFQGRKGASGEPGLPGPTGVRG
GSGERGPGGVSGPKGNQGIAGADGLPGDKGELGPFGPPGQKGEAGSRGELGPKGVQGPNG
TTGVPGIPGHPGKLGLQGIQGVPGITGKPGPPGKEASEQHIRELCGGMISEQIAQLAANL
RKPLAPGLSGRPGPAGPPGPPGAMGSVGHPGARGPPGYRGPTGELGDPGPRGDPGERGDK
GAIGKGVDGPDGDQGPQGPPGVPGTRKDGQDGSPGEPGLPGDPGRPGAVGVQGTPGVCDT
SACMGAVVGGKSKKS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggctggattctcagctcttggaatactttttctttttcaacttttggcctcatcctca
gctcagagaccaggaccacgaggccctcctggaccgcgaggccccccaggatcgtctggc
aaggatggcatagatggagaacctggtccacccggcttacctggtccaccaggacctaaa
ggggcactggggaaaccagggaaggcaggagatgcaggtttacctggccttccaggagtg
gatggtttgacaggaattgatggcccccctgggccaaatgggccaccaggagacagaggt
gccataggtccctcagggcccgctggacccgcagggaaaggacttccaggacctccagga
cctccaggacccagcgggctaccaggtggaaatgggtttcaagggccacccggaccatct
ggacttcccgggtttactgggccgccaggacctccaggaccaccaggtattccaggagtt
cttcctgatggcaatggtgaccttcagtgtccagccctctgtccgcctggccctccgggt
ccaccaggaataccaggattcaagggtcatacaggtcacaaaggtgaacccggagaagta
ggcaaggatggtgagaagggtgcaccaggcccaccaggtcccgcagggcctatgggaagt
gttggcatgcagggaccacgagggttaagaggcctcatcgggccagttggccccattgga
gacaggggatccataggtttccgaggaccacctggacttccaggacctcctggaaaagcg
ggacctcgtggagacagagggcctcaaggtttcagagggcccaaaggtgatacaggtata
cctggaccaagggggactctgggcactgctggacccttaggagaaccgggaatgcctgga
aaagatgggagagatggaacacctggactcgatggtgagaagggtgatgcagctcgtttt
ggtgttccgggagaaaaggggccaaatggacttcccggactacctggaagagctggaact
aaaggtgaaaagggtcagctaggcagttccggagagatgggagagtctggtccttcggga
gagccaggcatacctggagatcgcggcatccctggggagagaggcgaatctggtccaagg
ggatcttctggagcgcttggcttacaaggcccgatgggagcaccaggcgtcagaggtttc
cagggtcgtaaaggtgcaagtggagagcccggcctaccaggtcccactggagtccgtggt
gggtctggtgagaggggtcctggtggagtttctggtcccaaaggtaaccagggcattgca
ggagcagatgggctaccgggagacaaaggagaattgggtcctttcggtcctcctggacaa
aagggggaggcaggaagtagaggtgagctgggcccaaaaggcgtccaaggccccaatggg
acaactggtgttccaggaattccaggacatccaggcaagttgggattacaaggaatacaa
ggagtccctgggatcactgggaaacctggtcctccagggaaagaagctagtgagcagcat
ataagagaactctgtggtgggatgatcagtgagcaaattgcacagttagctgctaacttg
agaaagcccttggcgcctgggctatcgggtcggcctggtcctgcagggcccccagggccc
cctggagcaatgggaagtgtggggcatcctggtgctcgtggaccacctggatacagagga
ccaacaggggagctgggagatcctggccctagaggtgaccctggtgaaagaggagacaaa
ggtgccattggcaaaggtgttgatggaccggacggggatcaaggaccgcaaggaccacca
ggtgttcccggcactagaaaagatggccaggatggttctcccggtgaacccggattacca
ggtgatcctggaagaccaggtgcagtaggggttcagggaactccaggagtctgtgatacc
tcagcctgcatgggagctgttgttggaggaaaatccaaaaagtcataa
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