Hemicordylus capensis (graceful crag lizard): 128326704
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Entry
128326704 CDS
T08891
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03030
DNA replication
hcg03410
Base excision repair
hcg03420
Nucleotide excision repair
hcg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128326704 (RFC1)
03410 Base excision repair
128326704 (RFC1)
03420 Nucleotide excision repair
128326704 (RFC1)
03430 Mismatch repair
128326704 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcg03032
]
128326704 (RFC1)
03400 DNA repair and recombination proteins [BR:
hcg03400
]
128326704 (RFC1)
DNA replication proteins [BR:
hcg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
128326704 (RFC1)
DNA repair and recombination proteins [BR:
hcg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
128326704 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
AAA_22
PTCB-BRCT
AAA_14
AAA_30
RuvB_N
BRCT_2
RNA_helicase
NPHP3_N
AAA_19
TIP49
Zeta_toxin
AAA_16
AAA_5
AAA_18
nSTAND3
AAA_33
AAA_17
Rad17
AAA_7
NTPase_1
Motif
Other DBs
NCBI-GeneID:
128326704
NCBI-ProteinID:
XP_053110031
LinkDB
All DBs
Position
5:103774548..103865493
Genome browser
AA seq
1172 aa
AA seq
DB search
MAFFCLLEMVAVKMAALSEDRNCKQDIRKFFGVVNAGKKHECNDVKKNEKPKNEEVTLRE
KLKSKEIKVKNSSQEEVKQKQVIKKKRIIYDSDSEEEVQLVKKSKQPPDRKQSSKPDKIL
KKEPVVYVSETDEDEDFVNKKAFQKPKENGKSSSVCLGTTAAPKADTKQKIKSKPLSPVK
LTPTSVIDFFGTGSIQRSEKKLVSSKRKELSQSRDSTLDDEALAKQLQLEENTELERQLH
EDEEFARTLAMLDETPKKKKPRKDLEEKQTASIAKMSPDEAEKNKQDHKVKPGSSASELR
SYTAKDQTPTESTRTPESSSSKERKDLGDKTSSKVSSKLAALKQKGEGIKQENGTPKVES
LKRESATPKGKTVSPKDERTPKQEKISPQKSKSVSPEDSEKKRVNYQAYRSFLNREGPKA
LGSKEIPHGGENCLEGLTFVITGVLESIERDEAKSLIERYGGKATGNISKKTNYLVKGRD
CGMSKCDKASALGTKIIDEDGLFELIRTMPGKKSKYEVAAEAEAKKTKSKWEKMPQKAEA
DKRKISPAKRESEPKKKNPTPEKDDTLKSIRKVTTEARRGLDFEQKTLEKKQAPKVVESP
VQETSKGGGEVVLWVDKYKPTSLKAIIGQQGEQSCANKLLRWLRNWYKNPSEDKNVKSSK
FGSKDDGSSSKAALLSGPPGVGKTTTASLVCEELGLSYVELNASDTRSKNSLKEVVAESL
NNTSIKGFCSGTSSSVSTQHVLIMDEVDGMAGNEDRGGIQELIDLIKHTKIPIICMCNDR
NHPKMRSLVHYCYDLRFQRPRVEQIKGAMMSIAFKEDLKIPPPAMNEIILAANQDIRQVL
NNLCMWCAKNKSLTYDDVKEDANKAKKDIKLGPFDVARKVFVIGEETSRMSLIDKLDLFF
HDYSLAPLFVQENYIHVKPAAAGDNMKKHLMLLSKAADSICDGDLVDRQIRSRQNWSLLP
TQAIYSSVLPGELMRGYMNQFPNFPSWLGKFSSTGKHDRITQELSLHMSLRTHASKRAVN
LEYLSYLRDAIVRPLTCLGTEGVQDAVVFMDSYYLMKEDVENIMEVTSWGGKPSAFSKLD
SKVKSAFTRAYNKETHLTPYSLQMIKKSKRRAGSSLDTELNEGLETIEDKSDNEQDTIEN
DAMIKKKIKAVKQPRPERNEEKKKGKANKKSK
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggctttcttttgtctgcttgaaatggttgctgttaagatggctgccctatctgaggac
aggaactgtaagcaggatatccggaaattctttggggttgtaaatgctggaaagaaacat
gaatgcaatgatgtcaaaaagaacgagaaaccgaaaaatgaagaggtgaccttgagagaa
aagttgaaatcaaaggaaatcaaagtgaagaattcatctcaggaagaagtcaaacaaaag
caggtgatcaagaagaaaaggataatctatgattcagattctgaagaggaggtgcagttg
gtgaagaaatctaaacagccaccagatagaaaacaatcttcaaaacctgataagattcta
aagaaggaacctgttgtttatgtttcagagacagatgaagatgaagactttgttaataag
aaagctttccaaaaacctaaggagaacgggaaatcatcaagcgtttgtctaggaacaact
gcggcaccaaaggcagatacaaaacagaaaataaaaagtaaacccttatcgccagtgaaa
ctaacaccaacctctgtaattgatttctttggaactgggagcattcaacgatcggagaag
aaattggtgtcaagcaaacgaaaagagctttcacaaagcagagattccacattagatgat
gaggctcttgccaagcaactacagcttgaagagaatacagagctggaaagacagttgcat
gaagatgaagaatttgccagaactctggccatgttagatgaaacgccaaagaagaaaaag
cctcggaaagatttggaagagaaacagacagcttcaatagccaaaatgagcccagatgaa
gcagaaaaaaataagcaggatcacaaagtgaagcctggcagttcagcatctgaactgaga
tcttacactgcaaaagaccagactcctacagaaagtacaagaacgccagagtcgtcttct
agtaaggagaggaaggatttgggggataagacgtcttcaaaagttagttccaagttggca
gctctgaagcagaaaggagagggtattaaacaagaaaatggaactccaaaagtagagagt
ctcaaaagagaaagtgcaactccaaaaggaaagactgtttcaccaaaggatgagagaacc
cctaagcaagagaagatttctccccaaaaatcaaagtctgtaagtcccgaggactctgaa
aagaagcgagttaactaccaggcttacagaagcttccttaacagagaaggtccaaaagca
cttggttctaaagagataccccacggtggtgaaaattgcttggaaggtctgacgtttgtg
atcacaggtgtactggaatctattgagcgagatgaggccaagtctctcatcgagcgctat
ggggggaaagcaactggtaacatcagcaagaagaccaactatcttgtgaaaggccgtgac
tgtggcatgtctaagtgtgacaaggcatcggctttagggacaaaaattattgatgaagat
ggcctatttgaactaattcgaactatgccgggcaagaagtctaaatatgaagtagccgct
gaagcagaggcaaagaaaacaaaatccaagtgggagaaaatgccccagaaagctgaagca
gataaaagaaaaataagtccagcaaaaagagaaagtgaacctaaaaagaaaaaccctacc
cctgaaaaagatgataccttgaaatccatcagaaaggtaactacggaagcaaggagaggt
ctggactttgaacagaaaactctggagaagaagcaggctccaaaggttgttgagagtcca
gttcaagagacaagtaaaggtggaggagaggtggtattgtgggtggacaaatacaagccc
acatcccttaaagcaatcattgggcagcaaggcgagcagagttgtgccaataaactcctg
cgttggcttcgaaactggtacaagaatccttcagaggacaagaatgtaaaatccagcaag
tttggaagcaaagatgatggctctagttccaaagcagctttgctttctgggcccccaggg
gttggtaaaacaacaactgcttcgttagtttgtgaggaactgggtttaagttatgtggaa
ctcaatgccagtgacactcgcagtaagaatagtctgaaagaggtggttgctgaatctcta
aataacaccagtatcaaaggattctgttcagggacatcatcttcagttagcacacaacat
gtcctaattatggatgaggtggatggaatggctggcaatgaagacagaggaggaatacag
gaactaattgacctgatcaagcataccaagattccaataatttgtatgtgtaatgatcgg
aatcatcccaagatgcgttccctcgtccactactgttatgaccttcgctttcagagacca
cgtgtggaacagattaagggtgccatgatgtcaattgcctttaaagaagacttaaagatt
ccaccaccagcaatgaatgaaataatcttggctgctaatcaggacatcagacaagtttta
aataatctctgcatgtggtgtgcaaaaaacaaaagtctgacttatgatgatgtcaaagag
gatgcgaacaaagcaaaaaaagacatcaagctgggcccctttgatgtggccaggaaagtt
tttgttattggagaggagacctctcgcatgtctcttattgacaaattggacctgtttttc
catgattactctctagccccgctgtttgtccaagagaactacatacacgtgaaaccagct
gctgctggggacaacatgaagaaacatttgatgttactaagcaaagcagctgacagtata
tgtgatggtgacttagttgatcgacaaattcgcagcagacaaaactggagtcttctacct
acgcaggccatttactcaagtgtcctacctggggagttaatgagaggttacatgaaccaa
ttcccaaactttccaagctggctggggaaattttcatctacaggaaagcatgaccgaatc
actcaagaactgtcgttgcacatgagcctcagaacacatgcaagcaagagagcggtaaat
ctggagtatttgtcatacctccgcgatgccattgtgagacctttgacttgcctgggaaca
gaaggggtgcaagatgctgtagtgttcatggattcttattacttgatgaaggaagatgtt
gaaaatataatggaagtaaccagctggggaggcaagcctagtgcattctctaaactggat
tccaaggttaaatcagctttcacacgagcctacaacaaagagacacatcttacgccatat
tcattacaaatgataaagaagtcaaaacggcgagcaggatcttcactggatacagaactg
aatgaaggactggaaactattgaagacaaatcagataacgagcaagatactattgaaaat
gatgcaatgattaagaagaagatcaaggctgtgaagcaacccagaccagaaagaaatgaa
gagaagaaaaagggaaaagcaaataaaaagtcaaaatga
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integrated database retrieval system
