Hemicordylus capensis (graceful crag lizard): 128327203
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Entry
128327203 CDS
T08891
Symbol
ALMS1
Name
(RefSeq) centrosome-associated protein ALMS1 isoform X1
KO
K16741
alstrom syndrome protein 1
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hcg03036
]
128327203 (ALMS1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
hcg03037
]
128327203 (ALMS1)
Chromosome and associated proteins [BR:
hcg03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
128327203 (ALMS1)
Cilium and associated proteins [BR:
hcg03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
128327203 (ALMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
128327203
NCBI-ProteinID:
XP_053111607
LinkDB
All DBs
Position
5:4842404..4952170
Genome browser
AA seq
2897 aa
AA seq
DB search
MEVSEEQSVRVPPIVTTPPHPGVKEELLSQSSSGTQISNASGFSLGEAIRQRSAINREME
AWYHPCAEIDTSNVAVTLGRRLGQTVGVCELTEFPSMEEGLIIPTEDSRSQLAPNLTHSP
LLEVQDSCFSPNLPLLTTYSTQGRTFFNETLFQTGMDFAPLRGTPDVSGTASAESSRPLQ
MSEAVQLAATDVGSDLSSEGFFLSQHPLAGCHGVESNASLGSCLSQLPTSLSEYTDMEQK
EAEEEQMPHLDAGTKTLISSNESVGPQSSQKVLNQQLAAPLPSRESQGIASGHDLFRLDS
NVPAPLLLEMLEKEVGLSKYCGFLSSSESSSCKSVLGQDPEGNEMSQLTKTVALVETEAD
TLGVLHQQGARAIPELDSLRLLSESEGKPVRNVSVSEQSCANTSQGSVAFKGRSMDLGDS
CVIAGISPRLSLKQQPMQQISKGVFEEQKRELVSAMADCRLSAPAPLQLITMSAERVNSC
REQMNAMMGIQSRAGKSELTLSDFVVEREHKNTGISPSFNEGSFFGQLAHPIHHSTPGVF
TTRSLKQEAPGAALPVKPTLQSSLPHLHEETSKSPCVTVCIPSVEEPRGPSVDNTRVPSS
EEPLTLQSGQDAKHENSDYLAALHPLKSRIYSLPSLNFMEKVGAWNVSQSAERMSDALAL
GGVGGISPRQKAYSAIADSLNHILLKQQSQVELKEGLAASVCGPSSMAGLHTYNKKSPCV
LPLTRSQSENSVVVISREISRAEAGPETNPDDAVQAAEDKNTVVRAPGFKRSDADAEDPI
TQHYTAVLVSTVSSDEESISRGRSSNPDLFVTSERVAELLREEAGSLNGDQENSDGSPDN
TSKLPGFHLGTNQISMGHFSDVSPDSLNQVTSSEAGSCADLRLPSRQSSRRSSAVSGRLH
SSLEDILKTPDDRELNIEERIPVYLRNLGIDQSPSSILTPFMLRGPIREVEFSPTELRTL
KASTDILTQHLQASEGDSRSVMDVMQSSFNSSSLGVPVPVRSSTDPEPPLLPIELSPKPP
REVLSQCGVTCSQLKQHAPTPYLLENTFEFPAVPKSAEQSQIIPADSSSVLPDNERSTKC
VQMLMERFDLKELDGSQEKLASSSLSREKDEMVINEETSSASVVPDGERDDSFLGSKTLK
EIDKLLAEAENKTLSRSIIPASSISSTDLGSSLTQSKKIEDCEDSVSVKQSNPGLQRMWS
WDEAFTRQSVCKENASPKTLSLTGSLKWGDLHAADYHSNEQIVEGKSIPRSQISDEGYGL
AKQVVRSEPEGCNNVAPNTNLPVFVSGAGDGKSYNPREIKELQAVSSAQPLDGTSDMVGD
FHQVSEKAREAGTKGPGSNHESENSSSVDSLGLKVKNLLQRESLVMHAAQWVEEECQGGR
GKTQVSAAAGIACSEGSAGIQGSDNSSSLDSLAARVKMLLEDEQPVMHATQILRSAEEDE
KKARAWVKLKLAAHSADFVTDLTEEDQQKIDAIKREYLLGARKAGIVKDQLWGNGCERIS
SHSPVQKPDPGHLNIPSADDLQVGIPTQSFRLVEFPEVALQARPVCGTDCALPSDPGVSS
LSSSQNYVCNPLQTHSDDLVDSRHNVHVSLHDNPDTGLTDSSSALTVEEANVLAQETLTV
GNSSVEPAKQITSITFASRKRTSSPPASPVTYAGHTEAVPCGLGPLDAHPANTERLPKTL
QTFASANPATTHSLDARLASSRDHHQHHPQHVSKERSFREESTASAETSQANSVEQKIHT
VSDNCEEAQASFQILTGLRRHDRPIGGVYDQECNPEETVTDQPLSINSSQQKIDSAFFQN
QLTDSLEKIVCMPKTVSPKGKESILTKEDKFTIGSYSCGLEDANLGNSNLLPSSSTDHTV
VIMPVSPSSPTKKALSGVHITLSPKRIDLGLSSPMDSGAEMKRVDELKTSPWPANSNAPS
FFLEATSKLKPTELSPKTQDSAYFPGPTPSSDSHDRHSHIPVAVKLAAQQSWEPPESRVK
FPVPDQRSARVLGSGRKSLEDNFKTTTSSQTERLLSDAITQITESPEKTTYSAEIFVNND
VISAPRSSHQKSHEIPSPTTPALKQSLFYNPQTGKPPLLLPYKPPGSMEMYYVPCPKETL
RLSRVRSETTMESSHSGSNDAIPPEFPAQTLGSGVVTPPDAVAIKHNEGIYSKRVAPKVA
WTEEKIAAQEGVKASAKTRNPWESVNTTHSVFGSAQFYLHHPVPLQHEIDFLAGSQVLGQ
HAESGHPAAASRDFLQNKGAPERSQAPFSLRQPTGQESFSPLNAEPDYSLLEESRLKEAF
KRESPRKELTQPEVWKTGQKLAKGLLLPSSQMTSLKEKQAADLPMLQSSYFTGSLDELWT
KYLERQKQHQQRNPGGRSRSELSLVERLDRLARLLQNPIRQSLVSDRTKDEQSSVQVEAK
RKEPKKVRSQEKMALPSNLATHSNVGKMEQCPDSISNAQLSRSRDATATGHTRVLEQLQD
LETQSNTSSEMRSAKDSSVFTDLSTYESDVTAQAETETATQTEASVSVSTIDTARLIKAF
GHDRVQVSPKLSQLYSTINLQKTRSEKWAKGSRKATGARVEQKRKEAEATASVISSDSIS
TVAGSRGPSSALSNKRNTRMLNKAIQTGDFEIVHSATKKHTRDVGLTFPTPTSSQAQLQG
APRSGPEEELVQPDGLPSGSQGKPKRQPSSFLVERRPRRSKPRWLQGVSWFVSAEDLKLD
PQQGNGSNYITDPGPLWFEPETSTKPWREPLREKNWQGDRRGLQVRQTAPARDVENKPPP
PFVKMTLQEALALHRPDFISRSGERVKRLKLIMEERKLQNVLQSEREELFNPPEERRGYR
HTSSLQNRDYRAIRRKRAISKSEMVQRSKRIYEQLPEVRKRREEEKRKSDYSTYRLKAQL
YKTKVTNRLLGRKVPWE
NT seq
8694 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgtccgaggagcagagcgtccgcgtccctcctattgtgacaacgcctccgcat
cctggagtgaaggaagagctattaagccaaagcagcagtgggacccagatttcaaatgcc
agtgggttttccttgggagaagcaatcagacagagatctgctattaaccgggagatggaa
gcatggtaccatccttgcgcagaaatagatactagcaatgtggcagtgaccctggggagg
aggcttggccagacggttggggtctgtgagctgactgagtttcccagtatggaagaaggc
ttgattataccaacagaagactctagaagtcagctcgcacccaacttgacacactctcca
cttttggaagttcaggacagttgcttctctcccaacctcccactgctgacaacctactcc
acacaaggtcgtaccttcttcaacgagaccctctttcagactggaatggattttgctcct
ttgagagggactccagatgtttctggtactgcttcagcagagagttcgaggcccttgcag
atgagtgaagctgtgcagctggcagccacagacgttggctcagacctttctagtgaaggc
ttctttctgtctcagcatcctcttgctgggtgtcatggtgttgagagcaatgccagcctt
ggcagctgtctgtcccagctccccacttctctttctgagtatacagatatggaacagaag
gaagctgaagaagagcaaatgcctcaccttgatgctggcactaaaaccttgatctctagc
aatgaaagtgttgggccccaaagttcgcagaaggtgctaaatcagcaactggcagcacct
cttccttcaagagagtcccagggaattgcctcaggccacgatctgttccgtttggacagc
aatgtgccagcgcctctcctccttgaaatgctggaaaaagaagtggggttatcgaagtac
tgtgggttcttgtcatcttctgagagctcctcttgtaaaagtgttttgggacaggatcca
gaaggcaacgaaatgagtcagctgaccaaaactgtagctctggtggagacggaagcagac
acacttggggtattgcatcagcaaggagcaagagccattcctgaacttgattcattgaga
ctgctctcagagtcagaggggaagccagtcagaaatgtcagtgtatcagaacaatcatgt
gcaaacacttcacagggatcggtggctttcaaggggcgtagtatggatttaggggactct
tgtgtcattgctgggatatctccaagactgtcactgaagcagcagccaatgcagcagatt
tctaaaggagtgtttgaagaacaaaaaagagagcttgtttcagctatggctgactgtaga
cttagtgcccctgcacccctccagctaatcactatgagtgcagaacgcgtcaattcatgc
agagagcagatgaatgccatgatgggaattcagagcagagcaggcaaaagtgaattaaca
ctttcagactttgtcgtagagagagagcataaaaatacaggaatttcaccttcctttaat
gaggggtcattctttggtcagctggctcatcccattcatcattctactccaggggttttt
accaccagaagcttgaaacaggaagcgcctggtgcagcgctcccagtcaaacccactctt
cagtcctctcttcctcatttacatgaggagacttctaagagtccttgtgtcactgtgtgc
attccttctgtggaagagcctcgtggaccttctgtggataacactcgtgtgccttcatct
gaggagcctcttacacttcaaagtgggcaagatgctaaacatgaaaatagtgattatctt
gcagctctacatcctcttaaaagtaggatttactctttaccatctcttaacttcatggag
aaagtaggggcatggaatgtgagccagtcagctgagaggatgtctgatgctttggcttta
gggggtgtaggtggcatttctcctaggcagaaggcctacagtgctattgccgattcctta
aatcacattttattaaagcagcagagccaggttgagcttaaggaagggctggctgcatca
gtttgtgggccaagctccatggctggtttgcacacctacaacaaaaagtcaccatgtgtt
ttaccacttactaggtctcagtctgaaaactctgtggttgtaattagcagggagatttca
agggccgaagctggtcctgaaacaaatccagatgatgctgtccaagcagcagaagacaag
aacactgttgtaagagctcctggatttaagagaagtgatgctgatgctgaagacccaatt
actcaacattatacagctgttctggtctccactgtgtccagtgatgaggaaagtatttct
agaggaaggagttcaaatccagatctgtttgttaccagtgaaagggttgctgaacttctc
agagaagaagccggctctcttaatggtgatcaagaaaactctgatggctctccggataat
accagtaagttgcctggttttcatcttggcaccaaccagatcagcatgggtcacttcagt
gatgtttctccagatagtttgaaccaagtaactagttctgaggcaggcagctgtgctgac
ttgagacttccttcaagacaatcttcaagaagatcttcagctgtttctggaaggttgcac
agtagtttggaagatatattaaaaactccagatgacagagagttaaatatagaagagaga
atacctgtatacctccgtaatctgggcattgatcagtcaccttcatctatactgactcca
tttatgctccgaggtcccatccgagaagtagaattctctccaactgagctcagaacactg
aaggcatccactgatatattaacccagcatttgcaggcatcagaaggagattctcgctcg
gtgatggatgttatgcaatccagctttaattcttccagtcttggcgtgcctgttccagtg
aggtccagtactgaccctgagcctccactactgcctatagagctctcgccaaagcctccc
agagaggtgcttagtcaatgcggtgttacctgctctcaactgaagcagcatgctcctaca
ccataccttctagagaatacttttgagtttccagctgttccaaagtcagcagaacagagt
cagataattccagcagattcatccagtgttcttcctgacaatgagagatccacaaaatgt
gttcagatgctgatggagaggtttgacttaaaggaacttgatgggagtcaagaaaaactg
gcttccagctctttgtctcgagaaaaggatgaaatggttataaatgaagaaaccagttct
gccagtgtagttcctgatggagaaagagatgattcctttctaggatcaaaaacactgaag
gaaatagacaaacttttggcagaggcagaaaataaaactctgagcagaagcattattcct
gcctcatccatctcctccacagatctgggcagctcattaacacaaagtaaaaagatcgaa
gactgtgaagattctgtctcggttaagcagagtaatccagggcttcagagaatgtggtcc
tgggatgaagccttcaccaggcaaagtgtttgcaaagagaatgcgtcccccaaaaccctt
agtttaactggtagcttaaaatggggagatctgcatgctgcagactatcacagcaatgaa
caaattgtggaaggaaagtctataccaagatcccaaatatcggatgaaggatatgggctg
gcaaaacaagtcgtgcgatcagagccagaaggctgtaataatgtggcaccaaacactaac
ctgcctgtttttgtaagtggtgctggagatggcaaatcttataaccccagagagatcaaa
gaattacaggctgtttctagtgcccagcccttggacggcacctctgatatggtgggagat
tttcaccaagtctcagagaaagccagggaagctggcactaaaggaccagggagcaatcat
gaaagtgaaaatagcagtagtgtggactctctgggcctcaaagtgaaaaatcttctgcag
cgtgaaagtcttgtgatgcatgccgcacagtgggtagaggaggagtgccaaggtgggcgt
ggtaagacacaagtctcggctgcagctggcatagcttgcagtgaaggtagcgctggtatc
caaggaagcgacaacagcagtagcttggactctctggctgcccgggtcaagatgcttctg
gaagatgagcaacctgtgatgcatgcaacgcagatactacggagtgcggaggaagatgag
aagaaagcacgagcctgggtaaaactgaagctggctgctcattctgcagactttgtgact
gacttaactgaagaggaccaacagaagatagacgcaatcaagagggagtatcttctgggt
gccagaaaagctggaattgttaaggatcagctgtggggaaatggctgcgaaagaatttcc
agtcacagccctgttcagaagccagacccggggcacttaaacattccaagtgccgatgat
ctgcaagtgggcattccgacacaaagtttcagactagttgagtttccagaagtagcactg
caggccagaccagtgtgtggaactgactgtgcccttccaagtgacccaggggttagttct
ttgagcagcagccaaaattatgtctgtaacccacttcaaacacattctgatgatcttgtg
gactccagacataatgttcacgtttccttgcatgacaacccagacacgggactgacagac
tcctccagtgcactcactgtagaggaagcaaacgtcttggcccaggaaacgttgactgtg
ggcaattcttctgtggaacctgccaagcaaattacttctatcacttttgcatctcgtaaa
cggacctcatctcctccagcttcccctgtgacctatgctggccatactgaagccgttcct
tgtggtctagggcctttggacgcccatcctgctaatactgagcggctgcccaaaactctt
caaacctttgcttctgcaaacccagccaccactcattcacttgatgctagacttgcttca
agcagagaccaccatcagcatcaccctcagcacgtcagcaaagagagatcttttcgagaa
gaatctactgcatcagcagagacgtcccaagccaactctgttgaacaaaagatccacact
gtttccgataactgtgaggaagcacaggcttcttttcaaattctaactgggttgagaaga
catgacaggcctataggtggtgtttatgaccaggaatgtaatccagaagaaacagtcact
gatcaaccgctttccataaactcatctcaacaaaagatagacagtgctttcttccagaac
cagttgacagacagcttggaaaaaattgtctgtatgcctaaaacagtttctcctaaagga
aaggagagtattttgacaaaagaggacaaattcaccattggttcttattcttgtgggttg
gaagatgcaaaccttgggaacagcaatctgttgccttcatcctccacagatcatactgtg
gtgattatgccagtatcaccttcatcaccaaccaagaaagctctgtctggagtccatatt
actctgtccccaaaacgtattgatttgggcctttcaagcccaatggactctggagctgaa
atgaaacgagttgatgagcttaagacaagcccttggccagcaaattcaaatgctccaagt
tttttcttggaagctacctccaagttaaaacccacagaactttctccaaagacccaagac
tctgcatactttccagggccaacaccatcatcagattctcatgacagacattcacatatt
ccagttgcagtaaagctagccgcacagcaaagttgggagccacctgaaagcagagtgaaa
tttccagtccccgatcaaagaagtgctagagttctgggctctggtagaaagagcctagaa
gataatttcaagaccacaacttcttctcagactgaaagattgctatctgatgccatcact
caaataacagaaagccctgaaaagacaacctattctgcagaaatatttgttaacaatgat
gtgattagtgctccgagatcatctcaccagaagagccatgaaattccaagccccacaaca
cctgctctgaaacagtccctcttttataacccacagactggtaagccgccactgttgctg
ccatataaaccacccgggagcatggagatgtactacgtcccttgtccaaaagaaacactc
agattatcgcgtgtcaggtcagagactaccatggagagctcccattcagggtcaaatgat
gcaattcctccagaatttccagcgcagacacttggctcaggggttgtgactcctccagat
gctgtagctatcaagcacaatgagggtatttatagtaaaagggttgcacccaaggttgct
tggacagaagaaaaaatcgcagcacaagaaggtgtcaaagcaagtgccaagaccagaaat
ccctgggaatctgttaacactacccattcagtctttgggtctgctcagttttacctgcac
catccagtgcctctgcagcacgaaatcgacttcctcgctgggagtcaggtcttggggcag
catgccgagagtgggcacccagcagctgcttcaagagacttcttgcagaacaaaggggcg
ccagagagaagccaggcccctttctctctgcgtcagccaacagggcaggagagtttttct
ccactgaatgctgaacccgattacagtttgctggaggaatccaggctcaaggaggctttt
aagagagagtctccaagaaaggaactaacccagcctgaggtgtggaaaactggccagaaa
ttagccaaaggtctcctgcttccaagcagccaaatgactagcctcaaagagaagcaggca
gctgatctgccaatgttgcaaagttcttatttcactggcagtttggatgaactctggact
aagtacttagagcgtcaaaagcagcaccagcagcgtaatcctggtggccgcagcagaagt
gagctgtcgctagtagagcgacttgaccgattagctagactccttcaaaatcccatcaga
cagtcactcgtatctgatcgtaccaaggatgaacagagcagtgtccaagtggaagcaaag
aggaaagagccaaagaaggtcagatcccaagaaaaaatggcactcccaagtaacctggca
acccatagcaacgtaggaaagatggaacagtgtcccgatagcatcagcaatgcacagctg
tccagatccagagatgccacagctactggtcacactagagtcttggaacaacttcaagac
ttggagactcagagcaacacctcttcagagatgaggtctgccaaagactccagtgtgttc
actgacctcagcacctatgaatcggatgtgacagcccaagcagagacagaaacggccact
cagacagaggcaagtgtctccgtttccaccatcgacacagccagactgatcaaggctttt
ggacatgacagagtgcaagtatctccaaaactgtctcagctgtacagcactatcaaccta
cagaagacccgttctgaaaaatgggccaaaggaagcagaaaagccactggagctcgtgtt
gagcaaaaaagaaaagaggctgaggcaacagcctctgtcatttcatcagattctatttct
actgttgctggttcccgaggaccaagctctgctctcagtaacaagcggaacacacggatg
ttaaacaaggccatccagacaggagactttgagatagtccacagtgcaacgaagaagcac
actcgcgacgttggcctgactttccccaccccaacgtccagccaagcgcagctgcaggga
gcccccaggagtggccccgaggaggagcttgttcagcccgatggactcccttcaggaagc
cagggcaagccgaagagacagccaagcagcttccttgtggaaagaaggcccaggaggagt
aagccccggtggctgcaaggagtttcctggtttgtttctgctgaggatttaaaattggac
ccccagcaaggaaatggatccaactatatcactgaccccggccctttgtggtttgaacca
gagaccagcaccaagccgtggcgagagcccctccgagagaagaactggcaaggggaccgc
aggggcctccaggtgcgtcagacagccccagcacgagacgttgagaataagccaccccca
ccttttgtgaaaatgacactgcaggaggctcttgcgttgcaccgtcctgatttcatttcc
cgctctggggaacgtgtgaaacgcctgaagctaatcatggaagaaaggaagctgcagaat
gtgctccagagcgagagagaagaattatttaatcctcccgaggagaggaggggttacagg
cataccagttcccttcagaacagagactaccgggctatacggaggaaaagagccatttcc
aagagtgaaatggtgcagagatccaaacggatctatgagcagctgcctgaggtgcgaaaa
aggcgagaagaagagaagaggaaatcggactattctacataccgcctaaaggcccagcta
tataaaacgaaagtcaccaaccgccttttgggaagaaaagtaccttgggaataa
DBGET
integrated database retrieval system
