Hemicordylus capensis (graceful crag lizard): 128328015
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Entry
128328015 CDS
T08891
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hcg03016
]
128328015 (RTCB)
Enzymes [BR:
hcg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
128328015 (RTCB)
Transfer RNA biogenesis [BR:
hcg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128328015 (RTCB)
Prokaryotic type
tRNA splicing ligases
128328015 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
128328015
NCBI-ProteinID:
XP_053113491
LinkDB
All DBs
Position
5:223618309..223633656
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKNCWRIKKGFVPNMRVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDECDVQPVKEQLAQSMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACAHVAS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVIDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgaagctacaatgacgagctccagtatctggataagctggacaagaactgctgg
cgcatcaagaagggcttcgtgcccaacatgcgcgtggaaggtgtgttctacgtgaatgac
cctttagagaagctaatgtttgaagagttaaggaatgcatgccgaggcggaggtgctggt
ggttttctgccagctatgaagcaaattgggaatgtagctgcattgcctggcatcgttcat
agatctataggacttcctgatgtccattctggctatgggtttgccattggtaacatggct
gcctttgatatgaatgacccagaagcagtggtatcaccaggtggtgttggatttgacatc
aactgtggtgtacggctgcttcgtaccaaccttgacgagtgtgatgtccagccagtaaag
gagcagcttgcccagtccatgtttgatcatattcctgttggcgtgggatccaaaggtgtt
atccccatgaatgccaaggacttggaagaggctttggagatgggggtagactggtccctt
cgagaaggctatgcttgggctgaggataaagagcactgtgaagaatatgggagaatgctg
caagctgatcccaataaggtttctgcaagggcaaagaaaaggggattgcctcagctgggg
actctgggggcaggaaaccattatgccgagattcaggtggtggatgacatttataacgag
tatgctgccaggaagatgggcattgaccacaaagggcaagtgtgtgtgatgatccacagt
ggcagcagaggcctgggccaccaagtagccacagatgcccttgtggctatggaaaaagcc
atgaaacgggacaagatcatagtgaatgaccgccagctggcctgtgctcatgttgcttcc
caagaggggcaggattacttgaagggaatggcggcagctggaaactatgcatgggtcaat
cgttcttccatgacattcctcaccagacaggcatttgccaaagtcttcaacaccacccct
gatgatctggatatgcacgtgatctatgatgtttctcataacattgccaaagtcgagcag
catgtgatagatgggaaagaacggaccctgctggtgcacagaaaaggatcgaccagagct
ttcccccctcaccacccccttatagctgttgactaccaattgactggccagccagtgctg
attggtggtacaatgggaacttgtagctatgtccttactggtacagagcaaggcatgact
gaaacctttggaactacctgccacggagcaggccgcgcgttgtcccgtgccaaatctcga
cgcaacttggattttcaagatgtattggacaagttggcagacatggggattgcaatccgt
gttgcttctcctaaactggttatggaagaggcacctgaatcttataagaatgtgacagat
gtggttaacacctgccatgcagctggcatcagcaagaaagccattaaactgagacccatt
gccgttatcaaaggctag
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