Hemicordylus capensis (graceful crag lizard): 128328278
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Entry
128328278 CDS
T08891
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04140
Autophagy - animal
hcg04148
Efferocytosis
hcg05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
128328278 (VPS16)
04148 Efferocytosis
128328278 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128328278 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hcg04131
]
128328278 (VPS16)
Membrane trafficking [BR:
hcg04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
128328278 (VPS16)
Hops complex
128328278 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
128328278
NCBI-ProteinID:
XP_053114088
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All DBs
Position
5:4548072..4589401
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AA seq
837 aa
AA seq
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MDCYTANWDPLGDAAYYRKLELYTMDWNLREGLRECLVAAGPYGGPIALLKTRKEKSPSS
RPPLEIYSASGVLLASIPWKNSPAVHLGWTTSEELLCIQEDGSVLVYSLFCEFKRRFSMG
NEVLQNHVLEAKVFHTEYGTGVAILTGAHRFIMATNIEDLKLRRLPEVPGLQKPPSCWAV
LCQDRVTILLLAIGQDLYLLDNTACSPVTLPGLSPQAGSYLQMAVSFNYRYLALFTDTGY
IWMGRSHLKEKLGEFTCEFRAPPKQMVWCTRTRSKQRAVVMAWDRRLIVAGNSEQCIQYP
LDEDSYLVPELDGVRIFSRTTHEFLHEIPEASEEIFRIASMAPGALLLEAQKEYEKESQK
TDEYLREIKDQNLLPEAVRQCIEAASYEQEPEIQKSLLRAASFGKCFIETFSPEAFVKTC
RDLRVLNAIRDYQIGIPLSFDQYTQLTIEVLLDRLVLRRLYPIAIKICEYLRLSEFQGIS
RILAHWACYKVQQKDMSEEEVAQAINQKLGDTPGISYSEIAARAYECGRTELAIKLLEYE
PRSGKQVPLLLKMKRSKLALSKAIESGDTDLVYTVVLHLKNELNRGSFFMTLQNQPVALS
LYRQFCKHQELDTLKDLYNQDDDHQELGNFHVRSSYVSEKRIEGRVGSLQNAADEYSKAK
NEFAAKATEDQIKLLRLQRRLQDDFDKPYLDYSLHDTVYNLILDGNQKRAEQLYRDFKIP
DKRFWWLKISALAEREDWEELEKFSKGKKSPIGYLPFVEICMKHHNRFEAKKFAPRVAPE
QRVKAFILVGDLDQAAEAAIERKNEAEMNLVLSKCTATTEATVAAKVNHAKAQLGKK
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggactgctacacggccaactgggaccccctgggggacgccgcctactaccggaagctt
gaactgtacaccatggactggaacctgagggagggcttgcgtgaatgcctggtggctgcc
ggtccctatggaggtccgatagcattgctgaaaaccaggaaagagaaatctcccagttct
cggccaccacttgaaatctattctgcctctggggtcctcttggccagcattccgtggaag
aacagcccggcagtgcatcttggctggacgaccagcgaagagctgctctgcatccaggag
gatggctcggtcctcgtctacagcctcttctgtgagttcaagcgtcgcttcagcatgggc
aatgaggtgctacagaaccacgtgttggaggccaaggtgttccacacagagtatggcaca
ggtgtggccatcctcacaggggcccacaggttcatcatggctaccaacattgaagacttg
aagctccggaggctgcctgaagtgccaggtcttcagaagcccccctcctgctgggccgtc
ctgtgccaagacagagtgaccatcctcctcctcgccatcggtcaagacctgtaccttctg
gacaacacagcctgctccccggtgaccctgcccgggctcagcccgcaagccggctcctac
ctgcagatggctgtctccttcaactaccgctacctggcgcttttcactgacactggctac
atctggatggggaggtcccacttaaaggaaaaattgggggagttcacctgcgagttccga
gccccgccgaaacagatggtttggtgtacccggacccgaagcaagcaacgtgcggtagtg
atggcctgggaccggcgcctcattgtggctgggaactcggagcagtgcattcagtatcct
ctggatgaggactcgtaccttgtgccagagcttgatggcgtccggattttctcccgtacc
acccatgaattcctccacgagattccagaagccagcgaggagattttcagaattgcgtcc
atggcaccaggggcattgctactggaggcgcaaaaggagtatgagaaagagagccagaaa
accgatgaatatctgcgggagatcaaggaccagaatctgctcccagaggcagtcaggcag
tgcattgaagcggccagctacgagcaggagccagaaatccagaaatctctcctccgggcg
gcttcttttgggaaatgtttcattgagacgttctcccccgaggcgtttgtgaagacatgc
cgggaccttcgggtgctcaacgccatccgggattaccagattgggatccccctcagcttc
gatcaatacacacagctcaccattgaagtcttgctggacaggctggttctgcggagactt
taccccatcgctatcaagatttgcgagtacctgcgtctctccgagttccagggcatcagc
cgcatcttggctcactgggcctgctacaaagtgcagcagaaagacatgtccgaggaagaa
gtggcccaggccatcaaccagaagctgggcgacaccccgggcatctcgtactcggagatc
gctgcccgggcctatgagtgtggccggacagagctggccattaagctgctggagtatgag
ccccgatccgggaagcaggtgcccctgctgctgaagatgaagcggagtaagctggcgctg
agcaaagccattgagagcggagacaccgacctggtgtacacggtcgtcttgcacctgaag
aacgagctcaaccgcggctccttcttcatgaccctgcagaaccagccggtggctttgagc
ctctatcgccagttctgcaaacaccaagagctggatacgctcaaagatctctataaccaa
gatgatgaccaccaggaactcggcaacttccacgtacgctccagctatgtcagtgagaag
cggatcgaggggcgtgtgggcagtttgcagaatgcagcggacgaatattctaaagccaag
aatgagtttgcggccaaggccactgaggatcagatcaaactgctccgcctgcaacgccgc
ctgcaggacgacttcgacaagccctacttggactattccctccacgacaccgtctacaac
ctcatcctggacgggaaccagaagcgagccgagcagctgtaccgcgacttcaagatcccc
gataaacggttctggtggctgaagatctccgctttggccgagcgagaagactgggaggag
ctggagaagttctccaagggcaagaagtcgcccattggctacctgccctttgttgagatc
tgtatgaagcaccacaaccgctttgaggccaagaagtttgccccccgcgttgcccccgag
cagagggtgaaggccttcatcctggtgggggatctggaccaagctgctgaagctgccatc
gagcgcaaaaacgaggccgagatgaacctcgtcctgtccaagtgcactgcgaccaccgaa
gccaccgttgccgccaaagtcaaccatgccaaggcacagcttgggaagaagtga
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