Hemicordylus capensis (graceful crag lizard): 128328403
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Entry
128328403 CDS
T08891
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128328403
Enzymes [BR:
hcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128328403
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
128328403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Peptidase_S64
Helicase_C
Motif
Other DBs
NCBI-GeneID:
128328403
NCBI-ProteinID:
XP_053114338
LinkDB
All DBs
Position
5:complement(75137388..75250003)
Genome browser
AA seq
1726 aa
AA seq
DB search
MPKRKTAKSSKPAKTSGEQVGDSRSLNKVKLAKKKQKQITVLSEQEQKCLLEQITDLIFK
DIPKSQVSLLNDYVESEFILIDGDSLFITCASDSTLQRGQNLHFFFLVECFLLDLTSKGA
KYIIVFFKDAEQIYHENPDLLSLRTALIVHLVNNTDIAVQTEFSNCLDDSWNDFLKKISL
SFLIISDEGLNQLQTNLLHIFIIHALSRRISIVFISGQESDMVRIYGYRIHGGKDHQEFF
RKHQTNIKLCLENLLKNLERSGTEVLLSLLGCLCLEAVKGKGKRDIRYIVCIVSCSLVLE
VHNKELQSTTQKQKPPLTLQDVADLIRMYCLSVALLHHLPLSQRIQIRLITNNWNKETSV
LIQQHRFCEFLVLKHLTSEMLWNTDMFALPDLHDDLLWKNIVHYYEVEGGQEFGLDIRSN
ICRDYEYLWSNISALSKTVDVGTPFPLRRTSKCFLTKKSSLSEANASKMTVPRIKLIPMM
CTVVDEFAGDILKDLAFLKSDDPSDTSAENWGKNNKHLCWNSRRPLTDHYAGTGAAEDLW
ALQNLSVLQTSRCCYGQSLVDNSSKMNDIELDNSKSICTDVEKSKKNYTQAQMIIEENQK
QKRAEEIQKREKIQWDDSCMSTEREIKDNFKSGIDNLETIVKTFQNKSVKLAIKMAGLNV
CFDKWKEHCEDKGEPQKNLNLVVGIMRRIHSLLTNYQDVLKEDDYQQIVKYLRYLGFSNL
IATSKHTKVQGEKGQAFTKKLSPYATGIGSARFQLEYMGQYLIREERDDPDPRVQHFIPD
TWQREILDIVDNNESAVIVAPPSSGKSEASYYCVEKILRDSNEGTVVYVVPTQALVNQVV
ATVYGRFNKTLPEGLTLCGIFTQGHWHAALKCQVLVTMPQYFEDLLLAPHHQKWVKRIRY
VIFDEICYNGIDVGTEVWESLLLMIQCPFLVLSAAITNPEHLVEWLQSVKRYWRKCAKIA
VSENSGSSAAAEEKTNKKSARKQNKLYRLKLVLHEGRYNDFERYVCSVKDDDFTIHHYHP
YAALTVEHIKKYGFPVDLVLSPRETIVLYDTMVKVRTNWPKADKLDPEKYIHFKNKTVIT
KADARLYEKKLKKEFKMWIECDYNQEAGKVLKLLKPPVQCCSEKQMSDRFPHFVEKLQQM
DKLPAVFFMLNIKRAGDLAKKVYHFLEEKQRDMQIEKQEPLLTTKLGNIEKSANTKQTDD
MKLPCENDRTLVGKMQPENIMQQLEKIVEVPAGCTYANYKAVDIKDLHKIFDYARFIAKH
EDLKKLALRGIGYHHAFLEQKGKQFVEILFKMGFIQVVTATGTLALGINTPCKSVVFVQN
SEYLDALNYRWMCGRAGQRDYHLLGNIYFYNISLSKIEKLVKSNVPQTHGQFFLTVSLIL
RLMAFASEAEDKADARGKVVSLLKNSLLSFEQPKNLMVSKLYFLFSVQFLLKERYVDREG
NAVGVSELVTRLHCHEPSNFVFANFLVKGLFYKLCHPSHTGSKVFSKDVMEKLVLVLAHL
FGRKYMPAAVVKSKQNFSKSKVFLEDLPEDFAAALAVYNHKIEENFGQFLQTFSWLANTT
ERYQLPISKLDFSSKEQPDSSLASHIMSCDQERIALSPFVCLSGNSDLDLLHAGTVNNVM
LHALGIPAANIPILYLKKCDKQGRGMPLNAYVLDFYKHGSLAALSQDNGLHEGEAYRLLR
DFAFTVKTISVSLRDVCGSEDWNVVRAFEQLSRSYWEKLERVSKQN
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagaggaagactgccaaaagctcaaagcctgccaagacttctggagagcaggta
ggagattcaagatctttgaacaaggtcaagttggcaaagaagaagcaaaagcaaataaca
gttctaagtgaacaagagcaaaaatgcttgttggaacaaatcactgatttaatattcaaa
gatataccaaaatctcaagtcagcttgctgaatgactatgtggaatcagaatttattctg
attgatggtgattcattgttcatcacttgtgcaagtgactcgacacttcagcgagggcag
aacttgcacttctttttcctagtcgaatgctttttgctggatttaacaagcaaaggagcc
aaatacatcattgttttctttaaggatgcagaacagatatatcatgagaatcctgatctt
ctttccttgagaactgctttgatagtccaccttgtcaacaacactgatattgcagttcaa
actgaattttccaattgcttagatgatagttggaatgattttctgaaaaaaatctcccta
tctttcttaataatctctgatgaaggactgaaccaactgcagactaatttgcttcatata
tttattattcatgccttgtcaaggagaatcagcattgtctttatatcaggccaagaatcg
gacatggtcaggatttatgggtatcgtatccatggtggaaaggatcatcaggaatttttt
agaaagcaccaaacaaatattaagttgtgtttggaaaatctgttgaaaaacttggagaga
tctggtacagaagtattactttcccttttgggatgtttgtgtctggaggctgtgaaagga
aaggggaaaagagacatccgatatattgtctgtattgtctcatgttcactggtgctggaa
gtacacaataaggaattacaaagtaccactcaaaagcagaaaccgccgttaacattgcaa
gacgttgcagacctaatcagaatgtattgcctcagtgtggctttgctacatcacttgccc
ctttcacaacggattcaaattagactcatcactaataactggaataaggaaacttctgtg
ttaattcaacagcataggttttgtgagtttcttgtattgaaacaccttacctcggaaatg
ttgtggaacacggatatgtttgccttgcctgatttacatgatgatctcctgtggaagaac
attgttcactattatgaagtagaaggcggccaagagttcggtttggatataaggtcaaac
atttgtagagattatgaatatttgtggagtaatatttcagcactgtctaaaacagttgac
gttggaactccctttcctctgcgaagaacttctaagtgttttcttacaaagaagtcctca
ctaagtgaagcaaatgcatccaagatgacagttcctagaataaagcttataccaatgatg
tgcactgtagtggatgaatttgcaggggatattttaaaggacctagcatttttaaaaagt
gatgatcctagtgatacatctgcagaaaactggggaaaaaataataaacacctgtgttgg
aattcaagaagacctctcactgatcactatgctgggacaggagcagctgaagacctatgg
gccctacaaaacctttctgtattgcaaacatctcggtgttgttatggacagtcattagta
gataacagttcaaaaatgaatgatattgagttggataattcaaaaagtatttgtactgat
gttgagaagagcaagaaaaattatacacaagcacaaatgattattgaggaaaaccagaaa
caaaagagagctgaagaaatacaaaaaagagaaaagattcagtgggatgacagctgtatg
tcaactgaaagagaaataaaagataattttaagtctggaattgataatctagaaacaatt
gtgaaaacgtttcaaaataagtctgtgaaacttgccattaaaatggctgggctgaatgtt
tgctttgacaagtggaaagaacactgtgaagataaaggtgagccccagaaaaacttaaac
ttggtagttggaatcatgagaagaatccactcactgcttacaaactatcaggatgtattg
aaggaggatgattaccaacagattgtcaaataccttaggtatcttggatttagcaatttg
attgctacttcaaaacacaccaaggttcaaggggagaagggacaagcatttacaaagaag
ttgtccccgtatgctactggcataggatcagctcgatttcagctagaatatatgggccaa
tatctgatacgagaagagagagatgatccagatcccagggtgcagcattttattccagat
acatggcagagagaaattcttgacatagtggataataatgaatctgcagtgatagttgct
cctccatcatctggaaaatcagaagcttcttactattgtgtagaaaaaatcctgagagat
agcaatgaaggcacggttgtgtatgttgtacctacacaggctcttgtaaatcaggtggtg
gcaactgtttatggtcgatttaacaaaacactgccagagggtcttactttatgtggtatt
ttcacacaaggtcattggcatgcagccttgaaatgtcaggtcctcgtgactatgcctcaa
tattttgaagacttacttctggcacctcatcaccaaaaatgggtgaaaaggataagatat
gttatatttgatgagatctgttacaatggaatagacgttggaacagaggtttgggagtcc
ctgctacttatgattcagtgtccatttttggttctttctgcagctattaccaatccagaa
catcttgttgagtggctgcagtcagtaaaaagatactggcggaagtgtgcgaaaattgca
gtctcggagaactctggatcttctgcagctgctgaggagaagactaataagaaaagtgcc
agaaagcaaaataaattatacaggttgaaactagtgctgcatgaagggaggtacaatgat
tttgaaagatacgtatgttctgtaaaggatgatgacttcactattcatcactatcacccc
tatgctgcactaactgttgagcatattaagaagtatggcttcccagtggaccttgtcttg
tctcctcgagaaactattgtactatatgacactatggttaaagtcaggacaaactggcca
aaggcagataaactggatcctgaaaagtatatccatttcaagaacaaaacagtaataaca
aaggcagatgcaagactttatgagaaaaagctgaagaaggaatttaaaatgtggattgaa
tgtgattataatcaagaggctggaaaagtgctaaaactactcaaacctcctgttcagtgc
tgttctgaaaaacaaatgagcgatagatttccacattttgttgaaaaactacaacaaatg
gataaattgcctgcagttttctttatgttgaacattaaaagagctggagatttggctaaa
aaagtgtaccatttcttggaggagaagcaaagggatatgcaaattgaaaagcaagaacca
ttgctaacaacaaaattgggaaatattgaaaaatctgcgaacacaaagcagactgatgac
atgaaactaccctgtgaaaatgacagaacactagttgggaaaatgcaacctgaaaatata
atgcaacaacttgagaagattgttgaagtacctgctggttgcacttatgcaaattataaa
gctgttgacataaaggatttgcacaagatatttgattatgcaagattcatagcaaagcat
gaagatctcaaaaaactggcactaagaggcattgggtaccatcatgcctttctggaacaa
aaagggaaacaatttgtagagatccttttcaaaatgggatttatccaggttgtgacagcc
acaggaactctggctttgggaattaacacgccatgtaaatctgttgtctttgtgcaaaat
tctgaatatttggatgctctgaactatagatggatgtgtggacgtgccgggcaacgtgac
tatcacttgttgggaaatatatatttttataatatttcactgtcaaaaattgagaagctt
gtgaaatctaatgtaccccaaactcatggccagttttttctgactgtttctctgatattg
agactcatggcatttgcttcagaagcagaggacaaagctgatgcaagaggaaaggttgta
tcattactgaagaattcacttctgtcctttgaacaacctaaaaatctgatggtttcaaag
ctctatttcttgttttcggtgcagtttcttctcaaagagagatatgtggatcgagaaggt
aatgctgtgggagtttctgaacttgtgacccgattacattgtcatgaaccttccaatttt
gtttttgccaacttccttgtcaaaggcttgttctacaagctgtgccacccaagccataca
ggatcaaaggtcttttctaaggatgtgatggaaaagcttgtgttagtattggcacatctt
tttggaagaaaatatatgcctgctgctgttgttaaatctaaacagaatttttccaaatca
aaggtgttccttgaagatctccctgaagattttgctgctgctttagctgtgtacaaccac
aaaatagaagaaaactttggacaatttctacaaactttttcctggctggctaacacgaca
gaaagatatcaacttcccatttcaaaacttgatttttcaagtaaagaacaacctgattct
tcactggcatctcacataatgagctgtgaccaggaaaggatagcactttctccttttgta
tgcctttcaggaaattcagatcttgacttgttgcacgcagggactgtcaataacgttatg
ctgcatgcgctaggtattcctgctgcaaacattcccatcctttatttgaagaaatgtgat
aaacaaggaagaggaatgccacttaatgcatatgtgcttgacttctacaaacatggttct
ttggcagctctgtctcaagataatgggctacatgaaggagaagcttatcgtttgctgagg
gactttgcctttactgttaaaacaatcagtgtttctttgcgtgatgtttgtggcagtgaa
gactggaatgttgtgcgggcatttgaacaattaagccgcagctactgggaaaaactggaa
agggtttcaaaacaaaactaa
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integrated database retrieval system
