Hemicordylus capensis (graceful crag lizard): 128329178
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Entry
128329178 CDS
T08891
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128329178 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcg03021
]
128329178 (POLR1A)
Enzymes [BR:
hcg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128329178 (POLR1A)
Transcription machinery [BR:
hcg03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
128329178 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
HMG_box_2
DUF787
Motif
Other DBs
NCBI-GeneID:
128329178
NCBI-ProteinID:
XP_053115784
LinkDB
All DBs
Position
6:60179813..60253971
Genome browser
AA seq
1799 aa
AA seq
DB search
MGQAPPRGSAVLAAALGDQISAAAAIDPPYLRCRATKPTHAGTGRASEEKAGTGSPGQVA
FRVHSLARAILAVSTAARLGRAPGLGSLAPAMAAANEALLWRRLTGLSFGMYTAEEIRKL
SVKSITNHRFLDNVGTPSPNGLYDLALGPLNNKEVCATCAQDFNNCPGHLGHIELPLTVY
NPLFFDKLFLLIRGSCLNCCHLTCPRAVIHLLLNQLRLLEIGLLQAVHDLEAVLSRFLEE
NIDSPGVDVEEVLSQHTEDMLQNNQLRDQGSHVKNVCECRSKLISQFWKSYMGSKKCPIC
KAGRSLVRKEHNSKLTVTYPTVVIQKSGKETIVEEAATIDETQLGKRGYMTPATAKKHVE
ALWKNEGFFLCKLFAGMTVNGDSAFNPDMFFLDQLVVPPSRYRPVSCVGDQMFTNGQTVN
LQAVMKDALLTRKLLAIMAQEQHQSTQTEEGDSQMMMDQPSEPLDRSVLATIPGQTTADK
LYSIWIRLQSHVNISFDSDMDKLMSEKFPGVRQFLEKKGGLFRKHMMGKRVDYAARSVIC
PDMYIQTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNEHPGASMIINEDGSRTI
LSTASQTQREAIAKQLLTPSTGAPKPGIKTVCRHIKNGDVLLLNRQPTLHRPSIQAHRAR
ILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQNELGRAEAYVLASTDEQYLVPKDGTPL
SGLIQDHMVSGTSMTIRGCSFSREQYMELVYQGLTDKKGRVKLLPPAIIKPQQLWTGKQV
VSTLLINVIPEDHIPLNLSGKAKIDGKAWMTTSHSRMYGSALDFLCESQVIIRNGELLCG
VLDKAHYGSSAYGLVHCCHEVYGGETAGKVLTALARLFTAYLQFYRGFTMGVEDILVKRP
ADHKRRKIIKESTHCGTKAIKAAFNLPETSSSEEVRIKWQEAHLRKDQRDFNMVDLKFKE
EANHYNNEINKVCMPLGLYRNFPDNNLQLMVQSGAKGSTVNTMQISGLLGQIELEGRRPP
LMPSGKSLPCFQPYDFSPRSGGFVAGRFLTGIKPAEFFFHCMAGREGLVDTAVKTSRSGY
LQRCIIKHLEGLIVHYDLTVRDSDGSVIQFLYGEDGLDIPKTPFLQPKQFPFIADNHKAI
EKSKHLDEVLPKMDPQQANGQFKSIKRWQVKHQQSLRRKGGFLLFSQKNMASVRTEIPTG
ELVNGRDLATLQLLKMWYELSERSRSKYQKKAAKCPDPSLSLWRPDIYFASVSETFKIEV
ENFLGEWDTQNDLGCRKFELSSERLNDLLHLKWQQSLCDPGEAVGLLAAQSIGEPSTQMT
LNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSIPVLNTKKAHKKVKRLKKQLTR
VCLGEVLEKVDIGESLCLEGMQNKHRIYTMRFCFLPYECYREEKCVKPRDILHFMETRFF
KILLETIKRKSSKLASYNTVSTRRAVQRDLDHNGEGVASHENQEDPEAEEDRRVPDGEAV
EADDDATDAKRRAKQVEEVDYESDDDGEVMGDDEIPDEEENALHERDPEATETQDELYTP
SSRRQSQKKRQDTDELAKHRVSAVLEGHDAIESYTYDMDNDLWCEVTLKLPLTKEYFDLT
SLVMTLANSTVIHETKGITRCLLNETTSKNGEKVLTLQTEGINLPELFRYSEILDLNQLY
CNDIHAVADTYGIEAALKVLEKEIKDVFAVYGIVVDPRHLSLVSDYMCFEGVYKPLNRYG
MQSSSSPLQQMTFETSFKFLKDAAMLGSHDELQSPSACLVVGKVVKGGTGLFDLKQPLK
NT seq
5400 nt
NT seq
+upstream
nt +downstream
nt
atgggccaggcgcctccgagaggatcagccgtcttggcagcagcgcttggcgaccaaata
agcgcagccgcagccatcgacccgccatatttgcggtgccgcgctaccaaaccaacgcat
gctgggactggaagagcgagtgaggaaaaagccggaaccggaagtcccgggcaagtcgcc
ttccgtgttcattctctggcacgtgcaatcctcgccgtttctactgctgcgcgtctcggg
cgggcgccggggctgggaagccttgcgccggccatggcggcggcgaatgaggcgctgctg
tggcggcggctgacgggcttgtcattcgggatgtacacagccgaagaaatacggaagctg
agtgtgaaatctataacgaaccatcgtttcctggataacgtaggcactccatctccaaat
gggctgtatgatttggctttgggaccacttaacaacaaagaagtgtgtgctacctgtgca
caggacttcaacaattgcccaggtcacttgggtcatatagaactgcccctcactgtctac
aatcctctcttttttgataaattattccttctgatacgaggttcttgcttgaactgttgc
catctgacatgtccccgggctgtgatacatttattacttaaccagctgagactcttggaa
ataggattacttcaagcagtccatgatcttgaggccgtcctaagtcggtttttagaggaa
aatattgacagtcctggtgtagatgttgaagaagtgttaagtcagcacacagaagatatg
ctccaaaataaccaactaagggaccagggttcacatgtgaaaaatgtatgtgagtgtaga
agtaagctgatctcccagttttggaaatcatacatgggctcaaagaagtgcccaatctgc
aaagcgggaaggtcacttgtccgaaaagaacataatagcaaactcactgtgacttacccc
actgtggtaatccagaagtcgggcaaagagacaatagtggaggaggcagcaaccatagat
gagactcagctggggaaacgaggctacatgacacctgccactgccaaaaagcatgttgaa
gctttgtggaagaatgaaggtttttttctctgcaagctttttgctggcatgaccgtcaat
ggcgattcagctttcaatcccgatatgttcttcctagatcaacttgttgttcctccttct
aggtatcgtcctgtgagttgcgttggagaccagatgtttacaaatggccaaacagtgaac
ttgcaagctgtcatgaaggatgccctgctaacccggaagcttctagctatcatggctcaa
gaacagcatcagtcaacgcaaactgaagagggagactcccagatgatgatggatcagccc
tctgagcccctggatcgttctgttctggcgacaatcccagggcagaccacagcagataag
ctatacagcatctggattcgtcttcagagccatgtgaatatttcgtttgacagtgacatg
gataagctaatgtctgaaaagttccccggtgtgcgtcagtttctggagaaaaaaggtggc
ctgttccgtaagcacatgatgggaaagcgagtggattatgctgctcggtcagtcatctgc
cctgacatgtacattcagaccaatgaaattggtattcccatggtatttgctaccaaactg
acttatcctcaacctgtaactccctggaatgtccaagaactgaggcaggctgttataaat
ggccccaatgaacatcctggtgcctctatgatcatcaatgaagacgggtctcgcacaata
ttgagcacagccagccagactcagagggaagccatagccaagcaacttttaacgccttcc
actggggcaccaaaaccagggataaaaactgtgtgccgccatattaaaaatggagatgtc
cttttgctgaatcggcagcctacccttcacagaccctccattcaagcccatcgtgccagg
attttgcctgaagagaaagttctgaggcttcactatgctaactgtaaagcctacaatgct
gactttgatggtgatgaaatgaatgctcacttcccacaaaatgagctgggccgagcggaa
gcctatgtattggcctctaccgatgagcagtatcttgttcctaaggatgggacgccactg
tcaggtttaatccaggatcacatggtctctggtaccagcatgaccatacggggctgtagt
ttctctcgagaacagtacatggaattggtgtatcaagggttgacagacaaaaaaggaaga
gtgaagcttctccctccagccattataaaaccacaacaattatggacaggaaagcaggtt
gtttctacattgttaataaatgtgattccagaggaccatattccactgaatttgtctggg
aaggctaagattgatggaaaagcctggatgactacatctcattctagaatgtatggatca
gctcttgactttctgtgtgaatcccaggttatcattagaaatggtgagctgctctgtgga
gtcttggataaagctcactatgggagctctgcctatggtttggtgcactgctgccatgag
gtctatggtggtgagactgctggaaaggtgctgacggctctggcccgtctcttcactgcc
tacttacagttctacagggggtttacgatgggagttgaggatattttggtcaaacgccca
gctgaccacaagaggcgcaaaatcattaaagaatctacccactgtggcacaaaggccatt
aaagctgcatttaacttgccagaaacttcatcgagtgaggaggtccgaataaaatggcaa
gaggcacatctccgcaaagaccagagagactttaatatggtcgacctgaaattcaaagag
gaagccaaccattacaacaatgagattaataaggtatgcatgcctcttggactttacagg
aatttcccagataataacttgcagctgatggtacagtcaggcgccaaaggctctactgtg
aatactatgcagatttctggtttgctgggccagattgagttagaaggtcgaaggcctcca
ttgatgccatctggtaaatcactgccatgtttccagccttatgacttttctcccagatca
ggaggatttgtggcaggtagatttctcactgggattaaacctgcggaatttttcttccat
tgtatggccggtagggagggtctggtggatacagctgtcaaaaccagccgatctgggtat
cttcaaaggtgtatcataaaacatttggaaggactgatagttcattatgacttgactgtg
cgagacagtgatggcagtgtgattcagtttctctatggagaagatggattagatatcccc
aagacaccgttcctacaacccaagcaatttcctttcattgctgataaccacaaggcaata
gagaaatctaagcatttggatgaagttctgccaaaaatggatcctcaacaagcaaatgga
cagttcaaatccatcaagagatggcaagtcaagcaccagcagtctttgagaaggaaagga
ggctttttgctattttctcagaaaaatatggcaagcgtaagaacagaaatccctacagga
gaacttgtgaatggtcgagatcttgcaacactacagttgctaaagatgtggtatgaactg
agtgagaggagtcggagcaagtatcagaaaaaggcagcaaaatgtcctgatcccagtctg
tctctctggcgaccagatatctattttgcatctgtgtcagaaacatttaaaatcgaagta
gagaatttccttggagaatgggacactcagaatgaccttggctgccgcaagtttgaactt
tcttctgagagattaaatgacttgctgcatctaaagtggcaacaatcgctatgtgaccca
ggagaagctgtgggtctccttgctgctcagagcattggggagccctccacacagatgact
ctgaacacctttcattttgctgggagaggtgaaatgaatgtcacactcggtatcccaagg
ttgcgggagatcctgatggtagccagtgctaatattaaaaccccaatgatgagtattcct
gtacttaataccaagaaagctcacaagaaggtgaagagactgaagaagcagcttaccaga
gtgtgcttaggtgaggtgctagagaaagttgacattggagaatctttgtgtttggagggg
atgcaaaacaagcaccgcatctacaccatgagattttgtttcttgccgtatgaatgctat
cgggaagagaaatgtgtgaaaccaagggacatcttgcattttatggagacaagatttttt
aaaatcttgctggaaacaatcaagaggaagagttcaaagttggcctcttataatactgtc
agcactcgaagagcagttcagagggacttggatcataatggggaaggtgtagcatcacat
gaaaaccaggaggaccctgaagccgaggaagacaggagagttcctgatggtgaagcagtt
gaagcggatgacgatgctacagatgcaaaaagaagggcaaagcaggtagaggaggttgat
tatgagagtgatgatgatggtgaggtgatgggtgatgatgaaattccagatgaagaagag
aatgcattgcatgaaagggacccagaagcaactgaaactcaggatgaactttacactcct
tcctctaggcgacagagtcaaaaaaagagacaggatactgatgaattggcaaagcacaga
gttagtgctgtactggagggtcacgatgctatagaaagctatacatatgacatggataat
gatctgtggtgtgaggtcacattgaaacttcctctgacaaaggagtactttgacctgact
tcacttgtgatgactctggcaaacagcactgttatccacgagacaaaggggatcacacgg
tgtctcctaaatgaaaccactagcaagaatggagagaaggtgctcactttgcagactgaa
gggataaacctccccgagctcttccgatactctgaaattcttgatctgaaccaactttat
tgcaatgacattcatgcagtggccgatacttatggcattgaggctgccttgaaagtcctt
gaaaaagagattaaagatgtgtttgctgtgtatggaattgtggtagatcctcggcatctc
tctctggtgtcagattacatgtgttttgaaggtgtttacaagccattgaatcggtatggg
atgcagtctagctcatcccccttgcagcaaatgacatttgagactagtttcaagtttctg
aaggatgcagctatgctaggctcccatgatgagctgcaatcaccttctgcttgcttggtg
gtaggaaaggttgtcaagggaggaactggtttatttgatctcaagcaacctcttaaatag
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integrated database retrieval system
