Hemicordylus capensis (graceful crag lizard): 128329449
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Entry
128329449 CDS
T08891
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03030
DNA replication
hcg03410
Base excision repair
hcg03420
Nucleotide excision repair
hcg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128329449 (LIG1)
03410 Base excision repair
128329449 (LIG1)
03420 Nucleotide excision repair
128329449 (LIG1)
03430 Mismatch repair
128329449 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcg03032
]
128329449 (LIG1)
03400 DNA repair and recombination proteins [BR:
hcg03400
]
128329449 (LIG1)
Enzymes [BR:
hcg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128329449 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
128329449 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
128329449 (LIG1)
DNA replication proteins [BR:
hcg03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
128329449 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
128329449 (LIG1)
DNA repair and recombination proteins [BR:
hcg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
128329449 (LIG1)
NER (nucleotide excision repair)
Other NER factors
128329449 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
128329449 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
Motif
Other DBs
NCBI-GeneID:
128329449
NCBI-ProteinID:
XP_053116661
LinkDB
All DBs
Position
6:complement(28227293..28253343)
Genome browser
AA seq
915 aa
AA seq
DB search
MQSTIRSFFQPLARTKPGKETTEKKIPKEELTPKREPAHSEQLVNGTTFCAAKKVAKLHN
SEEDSGKPGENDVEGRDCKQASDCVPEQKIPADSIAPISCPTASNSPAPSSIPRRRTARK
QIPKHKAEEEAGSHDNTQENLSAKRRKCDDVEDDSRRELDERPIEVDERPMEEAEDNDSK
LVEHKTEKNAEKEKIPLPPKSSSKPIPSFFAPRKASVKAGKKQEPVMKENISAPKSCKEV
RSHESDSTAGGTLKPSLTLDPADYKPAKGSYHPIHDACWGSGQRVPYLAVARTFEWIEEE
SARLKIIETLSNLFRSAIVLSPEDLLPCVYLCLNRLGPAYEGLELGIGKTILMKALAQAT
GRQLDQIKAEAAEKGDLGLVAESSRTTQGIMFAPPKLGAAAVFSKLQAIGRMTGSSSMNK
KIDIIKGLFVACRHSEARYIARSLEGKLRIGLAEQSVLSALAQAASLTPPGQKFPPEILD
AAKGKSAEARKAWLEERALIVKQAFCELPNYDIIVPVLLEHGVQSLPQHCKITPGIPLKP
MLAHPTKGIGEVLKRFEEAAFTCEYKYDGERAQIHILENGEVHIYSRNQENNTTKYPDIV
SRIPKMKKSTVQSCILDTEAVAWDPDSKQIQPFQVLTTRKRKDVDAAEIRVQVCVYAFDM
LYLNGQSLVREPLSKRRALLRESFTETEGQFLFATSMDTSSTDEIADFLEHSIKDSCEGL
MVKTLEVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRAGTYGGFLLAC
YDEESEEFQSICKIGTGFTDEDLEKLHMSLKDHVIPQPRPYYRWGGTAEPDHWLEAQHVW
EVKCADLSVSPVHKAATGLVDEEKGISLRFPRFLRVRDDKKPEEATSSTQVAELYQKQQQ
IQNQQSVEKGDDDFY
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgcagagtaccatacgatcattcttccagcctttggcacggacaaagcctggaaaagag
acaacagaaaagaaaatcccgaaagaggaactgaccccaaaaagagaaccagcacattct
gaacagctggtgaatggtacaactttctgtgcagccaagaaagttgccaagctccataac
agtgaagaggattctgggaagccaggagaaaacgatgtagagggacgagactgcaaacag
gcatctgactgtgttcctgagcaaaagattcctgcagatagcatcgctccaatatcctgc
ccaactgcctctaattcacctgcaccctccagcatcccccggcgtagaactgcacgcaag
cagatccccaaacataaagcagaggaagaagctggcagccatgacaatacccaggaaaac
cttagtgccaaaagaaggaaatgtgatgatgttgaagatgattcaagaagggagctggat
gagagacccatagaggtggatgagagacccatggaagaagcagaagataatgattcaaag
ctggtagagcataaaacagaaaaaaatgcagagaaagagaaaattccattgcctcccaaa
tcatccagcaagcctattcctagtttttttgctcccaggaaagcctctgtgaaagcaggg
aaaaagcaggagccagtgatgaaagaaaatatatctgcaccaaagagctgtaaggaagtc
agaagccatgaatctgatagcacagctggtggtaccctcaagccatctcttacacttgac
cctgccgattacaaacctgcaaagggcagctatcatcctatccatgatgcttgctggggc
tctggccagagggtaccatacctggctgtggctcgtacttttgagtggattgaggaggag
tctgcccggctgaaaatcatagagactctcagcaacttgttccgctctgctattgttttg
tctccagaagacctgctgccctgtgtttacctttgtctcaatcggcttggtccagcatac
gagggcctagagctgggtataggcaaaactatcctcatgaaagccttggctcaggccact
ggtcggcagcttgaccagatcaaggcagaggcagcagagaaaggggacctgggtttggtg
gctgagagcagccggaccacccaaggcatcatgtttgccccacccaagcttggtgctgct
gctgtctttagcaagctgcaagcaattgggcgcatgacgggaagctcttccatgaacaag
aagattgatattatcaagggcttgtttgttgcttgtcgccactcagaggctcgttacatt
gctcggtcactggaagggaaactgcggattgggttagcagagcagtctgtcctgtcagct
ctagctcaggcagcatcgctcactcctccaggacaaaaatttcctccagagattctggat
gctgctaagggcaagtctgcagaggcacgcaaagcgtggctggaggagagagccctaatt
gttaagcaggccttctgtgagttgccaaattatgacataattgtgcctgtcctcctggaa
catggtgtccagagcctgcctcagcactgcaagatcacaccaggaattcctctgaagccg
atgttggcccacccaaccaagggcattggggaggtattaaaacgctttgaggaggcagct
ttcacctgtgaatataagtatgatggggagcgagcacagattcacatcctggagaatggt
gaagtacacatctacagccggaaccaggagaacaacacaaccaagtaccctgatattgtt
agccgtatccctaagatgaaaaagagcactgtacagtcatgtatcttagatacggaggct
gtagcctgggaccctgattccaaacagatccagcccttccaagtactgaccacccgcaag
cggaaggatgtggatgctgcagagattagagtgcaagtatgtgtgtatgcattcgacatg
ctgtaccttaatgggcagtctctggttcgggaacccctatccaagcgccgggccttgcta
cgtgaatccttcacagagactgagggccagttcctctttgccacttccatggacactagt
agcactgatgaaatagctgacttcctggagcactccatcaaagactcctgtgaggggctc
atggtgaaaacactggaagtggatgccacatatgaaattgcgaagaggtcccacaactgg
ctaaagcttaaaaaagattatctcgagggggttggggacaccctggacctggtggtgatt
ggtgcctacttgggcaaaggcaaacgtgcaggaacatatggaggcttcctcttggcctgt
tatgatgaggagagtgaggagttccaaagcatttgcaagattggcactggattcacagat
gaggacctggagaaactgcatatgtctctcaaggaccatgtcattccacaaccacgccct
tactaccgctggggtggaacagctgagcctgaccactggcttgaggctcagcatgtgtgg
gaggtgaagtgtgctgacttatcagtttcccccgtccacaaggcagccactggcttggtg
gatgaggaaaaaggcatttccctacgcttcccaagattcctgcgtgttcgagatgataag
aaaccagaggaggctacatcaagcactcaggtagctgagctgtaccagaagcagcagcag
atccagaaccagcagtcagtcgaaaaaggagatgacgacttctactaa
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