Hemicordylus capensis (graceful crag lizard): 128329947
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Entry
128329947 CDS
T08891
Symbol
CASC3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03013
Nucleocytoplasmic transport
hcg03015
mRNA surveillance pathway
hcg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128329947 (CASC3)
09122 Translation
03013 Nucleocytoplasmic transport
128329947 (CASC3)
03015 mRNA surveillance pathway
128329947 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128329947 (CASC3)
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128329947 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
128329947
NCBI-ProteinID:
XP_053117896
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All DBs
Position
6:complement(47367095..47397313)
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AA seq
714 aa
AA seq
DB search
MADRRRQRASQDSSEEDESDSPPGSAAASPRGTLRPGLAVAAAGGSTGGNESACVESVEA
AVVTVGGSPADSECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEETSKVDLKQDNNDTN
VLATKVDKGDEKPDSKGTVAGERQSGDGQESTEQVENKVGKKVPKHLDDDEDRKNPAYIP
RKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYD
IRSAHNPDDIKPRRVRKPRFGSPPQREPNWANERPSKPPRHQSLDSTPIPPRTFINRNSA
GTGRMPPPRTFPRPGGYKETRPSYRAVDVNSQHAPRFSEQSKHESSYRPRRSEPLPPREP
SPEAEVPYVRSSPVKKEEVVPESPTTPADSLPPPPPPDRPVEKKSYSRARRSRTKAGETG
KLADEVPLPSGLTPAALKTAEVIPSPSPAKTGNWEVPVEANLESLEQDMTQLNITEQNWN
PGQPQFIAPQAGIPNQMHIGAAPPPQFNRLEEMGVQGGRAKRYSSQRQRPVPEPAPPVHI
SIMEGHYYDTLQFQGPIYTHSENPAPLPPQGVIVQPEMHLPHPGLHPHQTPAPLANPGLY
PPPVSMPPGQQPPPPPPQQLLAPTYFSPPPGVMNFGSPSYPYPPGALPPPPPPHIYSNAQ
AQSQVYGGVTYYNTVQQQVQPKPSPPRRTSQPVTIKPPPPEDSRNEKSKERNTT
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcgacggaggcagcgcgcttctcaggacagtagtgaggaagacgaatctgac
tcgccgcccggcagcgccgccgcttccccccgcggcaccctccgccctggcttggccgtg
gccgccgctggcggcagtacaggcggcaatgagagtgcttgtgtcgagagtgtggaagcg
gcggtggtgacggtgggaggcagcccggccgactcggagtgtgaaagtgaagacggcata
gaaggagatgctgttctctctgactatgaaagtgctgaggactctgagggtgaggagggg
gaatacagcgaggaagaaacatccaaagtggacctgaagcaggataataatgacactaat
gtgctggcaacaaaggtggacaaaggggatgaaaagccagattctaaaggtactgtggca
ggcgagaggcagagtggagatggacaggaaagcactgaacaagttgagaacaaggtaggc
aaaaaagttcccaaacatctggatgatgacgaggacaggaagaaccctgcatacatacct
cgcaaaggtctcttctttgaacacgaccttcgtgggcagacccaggaagaggaagtccgg
cctaagggtcgtcagcgtaagctttggaaagatgagggaaggtgggagcatgataagttc
cgggaggatgagcaagcaccaaaatcaaggcaggagctgattgctctctatgggtatgat
atccgctcagcacacaaccctgatgacatcaaacccaggagggtgcgcaaaccaaggttt
gggagtccaccacagagagagcccaactgggccaacgagcgacctagtaagccgccacga
caccagagcctcgacagtactcctataccacctcggacgttcatcaaccggaactctgca
gggacaggacggatgcccccaccacggactttcccaagacctggtggctacaaagagacc
cgcccaagctaccgtgccgtggatgtaaatagtcagcatgcgcctcgctttagtgagcag
tcaaagcatgagagcagttaccggcccaggcgctcagagccgctcccaccacgagaaccc
tctcctgaggcggaggttccgtatgttcgcagcagccctgttaaaaaggaagaggttgta
ccagaaagcccaacaactcctgcagattctctaccaccaccaccaccaccagatagacct
gtggaaaagaagtcctactcacgggcaaggaggagccggaccaaagcaggcgagacaggg
aaattggcagatgaagtcccacttccatcagggttgacacctgcagcgctgaaaactgca
gaggttataccatccccctcgccggcaaagactgggaactgggaggtgcctgttgaagcg
aatctagagagtcttgagcaagacatgacccagctgaatataacggagcagaattggaac
ccagggcagccccagttcatagcacctcaagcaggtattcctaaccagatgcacattggc
gcagccccaccacctcaattcaacaggctggaagagatgggagttcagggggggcgtgcc
aagcgttactcgtcgcagcgacagaggcctgtcccagagcctgctccacccgtgcacata
agcataatggaagggcattactatgatacattacagttccagggaccgatctacacccac
agcgagaaccctgccccactgcctccccaaggagtgattgtgcagccagaaatgcatctc
ccccatccaggcttacacccacaccaaacacccgcacctttggctaaccctggtttatat
cctcctccggtctccatgcctcctggacagcagcctccgccaccgccaccacagcagctg
ctagcaccaacctacttctcccctcctcctggggtgatgaattttggcagtcctagttac
ccctaccctccaggcgcacttccaccacccccacctcctcatatctattccaacgctcaa
gcccaatctcaggtgtatggcggggtcacctattacaacacagtccaacagcaagtgcag
ccaaaaccttcaccaccccgaagaacatcccagccggtcaccatcaagccacctccccct
gaggacagtagaaatgaaaaatccaaagagaggaacaccacctaa
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