Hemicordylus capensis (graceful crag lizard): 128330001
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Entry
128330001 CDS
T08891
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128330001 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcg03021
]
128330001 (SMARCC1)
03036 Chromosome and associated proteins [BR:
hcg03036
]
128330001 (SMARCC1)
Transcription machinery [BR:
hcg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128330001 (SMARCC1)
Chromosome and associated proteins [BR:
hcg03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128330001 (SMARCC1)
PBAF complex
128330001 (SMARCC1)
GBAF(ncBAF) complex
128330001 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
DUF919
Motif
Other DBs
NCBI-GeneID:
128330001
NCBI-ProteinID:
XP_053118084
LinkDB
All DBs
Position
6:complement(169203962..169367843)
Genome browser
AA seq
1172 aa
AA seq
DB search
MRGARRVGGVAPRRRRRRRGRPGRTMAAASAATAVAGGTAAGGGGGAAGAAGGGTGGSGG
SSAPGGSAAAGGAAAAVSSSSSSSSSGSPLSASRRKDGGPAGKFWESPETVSQLDAARAW
LGKHCKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVANPAFTKFPAKCFMDFKAGGTL
CHILGAAYRYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLSRPTIYLVPDIEL
KLANKLKDIVKRHQGTVTEDKSKATHHICPIPTSLDEEEWLRPVMKKDKQVLVHWGYYPD
SYDTWVHATDIDAEVEDPPIPEKPWKVHAKWVLDTDVFNEWMNEEDYEVDENKKPISFRP
RIYMKNEEPVRSPERRDRKAAAGARKRKHSPSPPPPPTPVESRKKAGKKGQANLYGKRRG
QKEDDDQEDLTKDMEDPIPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEEAMA
TGGKEDEDPNKGDQSRSIDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNG
KNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLINY
QVDPESRPMAMGPPPTPHFNVLADTPSGLMPLHLRAPQIPAAQQMLNFPEKNKEKPTDLQ
NFGLRTDIYSKKTLAKSKSASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDEC
ILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKA
ALEEFSRVREEVPLELVEAHVKKVQEAARVSGKVDPAYGLESSCIAGTVPDEPEKLDGVE
EEKMETDTDGSQAEKVKVENKGENEIGDGNKVQEGEEERNAEKEPDGEIPQDSKPDEEAE
ENKENLDVCKDKESDVGKKRMEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLV
ALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQ
QLEQQQQHSQNAPQSHQHSSGPGMNPLGTAGHPGLMSHQQPPPYPMMHHQMPPPHTPQPG
QILGPGSMMPGQPMPGRILSTTAASIHPTGTSGGGGSTPSSGAAPMTGNIVGPRGALASP
NGLYPPAAQQPPAPVDGATPPPAGGLPASTAP
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggagccaggagagtgggaggcgtcgcgccccggcggaggaggcggcggcgcggc
aggcccggcaggacaatggcggcggcatccgcggcgacggccgtggccggagggacagca
gcaggcggcggcggaggagcagccggagcggcggggggaggaacgggaggcagcggcggc
agctcggccccagggggctccgcggcggcaggaggcgccgccgctgccgtttcctcctcc
tcctcctcctcctcctccggcagccccttgtcggcctcgcgccgcaaggacggaggccct
gccggcaagttctgggagagcccggagaccgtctcgcagctggacgccgcgcgggcctgg
ctcgggaagcactgcaagaagtatgttcaagcagatgctcctaccaataaaacactggct
gggcttgtggtgcagctgctgcagtttcaggaagatgcctttggaaaacatgtcgccaat
cctgccttcacaaaatttcctgcaaagtgcttcatggatttcaaagccggtggaacactc
tgccacattcttggtgctgcttataggtataagaatgagcaaggatggcggcggtttgac
ttgcagaacccttcccgaatggatcggaatgtagaaatgtttatgaatattgaaaaaaca
ttagtgcagaataactgtctaagcagaccaaccatctacctcgttccagatattgagctg
aagttagcgaataaattaaaggacattgtcaaacgtcaccagggcacagtcacagaggac
aagtctaaagccacccaccatatttgtcctattcctacctcattggatgaagaagagtgg
ctaagacctgtaatgaaaaaagacaagcaggttcttgtgcattggggctattacccagac
agctatgacacttgggttcatgctactgatatagatgcggaagttgaagaccctccgatt
ccagaaaaaccgtggaaggttcatgccaaatgggttctggacacagacgtattcaatgaa
tggatgaatgaagaagattatgaagtggatgagaacaaaaagccgatcagctttcgcccg
cggatctatatgaagaatgaagaaccagtccgcagtcctgaacggagagataggaaggca
gccgcaggtgccagaaaaagaaagcactctccttcgccgccgccacctcccaccccagtg
gaatcaaggaaaaaagctggaaagaaaggacaagcaaatctatatgggaaaaggcgtggg
caaaaggaagatgatgaccaagaagatcttaccaaggatatggaggatccaatccctgtg
cctaacatagaagaagtggtacttcctaaaaacgtcaatccaaagaaagacagtgaaaac
acgccagtgaaaggaggaacagtagcagacttagatgaacaggatgaggaggcaatggct
acaggaggaaaggaagatgaagatcccaacaaaggggaccagagtcgctcaatagaccca
ggagaagacaatgtcacagaacagactaatcacattattatccccagctatgcatcttgg
tttgactataactgtattcatgtgattgaacgccgtgctcttccagaattcttcaatggg
aaaaacaaatctaagaccccagaaatatacttagcgtaccgcaatttcatgattgatacc
taccgcttaaatcctcaagagtacttgactagcactgcttgcagaagaaacttgactgga
gatgtctgtgcagtaatgagagtacatgcctttctggagcagtgggggcttattaattac
caagtggatccagaaagcaggcccatggccatgggccctcctcccactccacacttcaac
gtgcttgctgacaccccctctggactcatgcctcttcatctccgtgcgcctcagatccca
gctgctcagcaaatgttgaattttcctgagaaaaacaaggaaaagcctactgacctgcag
aactttgggcttcgcacagacatttactcaaagaaaacattagcaaaaagcaaaagtgca
agtgctgggcgagaatggacagagcaagagactctgttgctactagaggcattggagatg
tacaaagatgattggaataaagtttcggagcatgttggaagccgcactcaggatgagtgc
attctccacttcctgaggcttcccatcgaagacccatacttggagaactcagatgcctcc
ttgggccctttggcttatcagcctgtgccttttagccagtctggaaacccagtgatgagc
acggtggcttttctggcatctgtcgtcgatccccgggtggcgtctgctgccgctaaagca
gctttagaggaattttctcgggttcgagaggaggtcccactggaactggtagaggcccat
gtcaagaaagtgcaagaggcagccagagtctctgggaaagtggatcccgcgtatggccta
gaaagcagctgcattgctggaacagttccagatgagccggagaagcttgatggagttgaa
gaagaaaaaatggaaacggacacagatgggtcacaggcagaaaaagttaaggtagaaaac
aaaggagaaaatgaaataggagatggaaacaaagtacaggaaggagaagaggagagaaat
gcagaaaaggagccagatggtgaaatcccccaagattccaagccagatgaggaggcagaa
gagaacaaggagaaccttgatgtgtgcaaagacaaggagagtgatgttgggaagaagaga
atggagcacgaaatctccgaagggaatgtagcgacggctgcagctgctgctcttgcctcg
gctgccaccaaagccaagcatctagcggcggttgaggagaggaagatcaaatccttggta
gctctcctggtggaaacacaaatgaaaaaactggagatcaaactccgccattttgaggag
ctggaaacaatcatggatagagaaaaagaggcgctggagcagcagagacagcagctgctg
accgagcgccagaacttccacatggaacagctgaagtatgcggaattgcgtgcccgtcag
caactggagcagcagcagcagcacagccagaatgctccacagtcgcaccagcattccagc
ggccccggcatgaaccctcttgggacagctgggcatccaggcttgatgtctcaccagcag
cctcctccgtatcccatgatgcaccaccaaatgccccctcctcacaccccacagccaggt
cagatcctaggcccgggctccatgatgcctgggcagcccatgccaggccggatcctgtca
accactgcagccagcattcacccaactggcaccagtggcggcggtggcagcactccctca
tctggtgcagcaccaatgactggaaacattgttggaccccggggggccctcgcatctcca
aacggcttgtaccctccagcggcacagcagcctccggctccggttgatggggccactccg
cctcctgcagggggtctgccggcctccacagcaccctga
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