Hemicordylus capensis (graceful crag lizard): 128330051
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Entry
128330051 CDS
T08891
Symbol
TRIM28
Name
(RefSeq) transcription intermediary factor 1-beta isoform X1
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
hcg01001
]
128330051 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hcg04121
]
128330051 (TRIM28)
Enzymes [BR:
hcg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128330051 (TRIM28)
Protein kinases [BR:
hcg01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
128330051 (TRIM28)
Ubiquitin system [BR:
hcg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
128330051 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
zf-RING_5
zf-RING_UBOX
PHD
zf-RING_2
zf-C3HC4
zf-C3HC4_2
YaaC
Motif
Other DBs
NCBI-GeneID:
128330051
NCBI-ProteinID:
XP_053118198
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All DBs
Position
6:complement(34288353..34329466)
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AA seq
874 aa
AA seq
DB search
MSTPATAPAPAETGGGGGGGGGSGSAGAGAAGDKQRSSSSATAPNVEGIDLLEKCGVCRE
RLRSERDPRLLPCLHTVCKECLKAEPAGSGSSSSNNKDGQVVDCPVCKHQCYLKDIVENY
FLRDGGTETLGDARDANQCCTSCEDNAPATSYCVECQEPLCETCVEAHQRVKYTKDHTVR
STGSSKSQEKEKTVYCSVHKHEPLVLFCDTCDTLTCRDCQLNAHKDHQYQFLEDAVKNQR
KMLASLVKRLGDKHANLQKSTKEVRSSIRQVADVQKRVQVDVKMAILQIMKELNKRGKVL
VSDAQKVTEGQQEKLERQHWAMTKLQRHQEHILRFANCALESDNNTALLLSKKLIYFQLH
RALKMIVDPVEPHGDMKFQWDLNAWTKNAETFGQIVSERSGLPVTPNAQTPQQRANATSA
ASGGVAVRQGSVPPSQGVQQMSLQTSMVNKGALLQPVLPSNSQRQAIPDCYINDASASSA
GQPMDIGDGFGVEGSYSGEANVSGMKRARGQDGDSGLMRKVPRVSLERLDVDLTSDSQPP
VFKVFPGTSTEDYNLIVIERGVQQAAAAAAAAAAAQQAGLSATAVKEEQMEAAIEHPASD
TKDTKPLVLPQDITLLEGSSAPRLISPSGSTSSAMEMQSVHSHDGTANGEEAAYCRVCLK
AGAVVMCDGCKKCYHLDCHLPVLQEVPSREWKCLLCEEPVAAIEEDGTDLTAISIDGEPK
MLSSTDQQRCEQVLLELLCYEPCRPLHRLSNATEGQNTIDLTLIRAKLQRKLSPPYGSPD
EFADDVWKMFRQFNKLTEDKEDVQSIIGLQRFFEAKLSAAFGDRKFSVLRDPINVDDPQK
ESSSLPPHGSPTTDSGEAISSKAEGSSGDEGTAT
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccccggcgacggcccctgccccggcggaaactggcggaggaggcggcggcggc
ggcggcagtggtagcgcgggcgccggcgccgcgggggacaagcagcgctcctcctcctcc
gctaccgcccccaacgtggaaggcatcgacctgctggagaagtgcggcgtgtgccgggag
cggctgcgctcggagagggaccctcgtctcctgccctgcctccacaccgtttgtaaggag
tgccttaaggccgagcccgccggcagtggcagcagcagcagcaacaacaaggatggccaa
gtggttgactgcccagtgtgcaagcaccaatgttacctaaaagacatagtggagaactac
ttcctgagagatggtggtacagagactcttggggatgcaagggatgctaaccagtgttgc
accagctgcgaagataatgccccagccaccagctactgtgtggagtgccaggagcctctg
tgcgagacttgtgtggaggctcaccagagagtgaaatacactaaggatcatactgtccga
tccacagggtcctccaagtcccaggagaaagagaagacagtctactgttccgtccacaag
catgagccgctggtgctattctgcgacacttgtgacaccctgacctgtcgagactgccag
cttaatgctcacaaggatcaccagtaccaattcttggaagatgcagtcaagaaccaacgc
aagatgctggcctcgctggtcaagcgcctgggagataagcatgccaacctgcagaaatcg
accaaggaagtgcgctcctcgatccggcaggtggcagacgtgcagaagcgcgtgcaggtg
gatgtgaagatggccatcctgcagatcatgaaggagcttaataagcggggaaaggtgctg
gtcagtgatgcacagaaagtcactgaagggcagcaggagaagctggagaggcagcactgg
gccatgaccaagctccagcgccaccaggaacacatcctgcgctttgccaactgcgccctg
gagagtgacaacaacactgccttgctgctttccaaaaagctgatctacttccaactgcac
agggctctaaaaatgattgtggatcctgtggaaccccatggagacatgaaattccagtgg
gacctaaatgcctggaccaagaatgcagagacatttggtcagatagtctctgaacggagc
ggtttgccagtgacccccaacgctcagaccccccaacagcgggccaatgccacctctgct
gcatctggaggagtagcagttaggcagggctctgtccctccttctcagggtgtgcagcag
atgtctctgcagacaagcatggtgaacaaaggagccctgcttcagcctgtgctgccttcc
aacagccagcgacaggccatccctgattgctatatcaatgatgccagtgcctcttctgca
gggcagccaatggacatcggtgacggctttggtgtagaaggatcatactctggtgaagca
aatgtatctggaatgaaaagagcccgtggccaagatggagactctggtctcatgcgcaaa
gtgccccgtgtcagtctggagcggctggatgtagacttgacatctgacagccagccaccg
gtcttcaaagtcttcccaggaacttccactgaagactacaatctcattgtgattgaacgt
ggggttcagcaagctgcagcagcagctgcagcagcagcagctgcccaacaagcagggctg
tcagctactgcagtgaaggaggagcagatggaggcagctattgaacacccagcttctgat
actaaagacaccaagcctcttgtcctgcctcaggacattactcttctagaaggctcctct
gccccccggcttatatcccctagtggcagcaccagctctgccatggaaatgcagtctgtt
cacagccatgacggcacagccaatggggaagaagctgcttactgcagggtctgcctgaag
gctggcgccgtggtcatgtgtgatggctgcaagaagtgctaccatttggattgccacctg
cctgtccttcaggaagtccccagccgggaatggaagtgcctgctgtgtgaggagcctgtg
gcagccattgaagaggatggaactgatttgactgcgatctccatagacggggagccaaag
atgctctcatctactgaccaacagagatgtgaacaagttctcctggagttgttgtgttat
gagccatgcagaccccttcaccggctttccaatgccacggaggggcagaacaccattgac
ttgaccttgatcagagccaagctgcagcggaagctctcaccaccttatggttctcctgat
gaatttgcagacgacgtttggaagatgttccggcagtttaacaagctgacagaggacaag
gaggatgttcagtccattattgggttgcagcgcttctttgaagccaagttgagtgctgct
ttcggcgatcggaagttttccgtgctgcgtgaccccatcaatgtggatgacccgcagaaa
gaaagcagcagccttcctccccatggctccccaaccactgattcgggagaggccatatct
tccaaggctgaggggagcagtggggacgagggaacagccacataa
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