Hemicordylus capensis (graceful crag lizard): 128330602
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Entry
128330602 CDS
T08891
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03020
RNA polymerase
hcg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128330602 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
128330602 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcg03021
]
128330602 (POLR2A)
03400 DNA repair and recombination proteins [BR:
hcg03400
]
128330602 (POLR2A)
Enzymes [BR:
hcg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128330602 (POLR2A)
Transcription machinery [BR:
hcg03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
128330602 (POLR2A)
DNA repair and recombination proteins [BR:
hcg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
128330602 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
128330602
NCBI-ProteinID:
XP_053119689
LinkDB
All DBs
Position
6:2933838..2958470
Genome browser
AA seq
1969 aa
AA seq
DB search
MHGGAPSGDSACPLRTIKRVQFGVLSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDS
NNPKIKDILTKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQTEGDEDISKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFILGMDPK
YARPEWMICTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNNDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEEMVKDILSNAHIQNELEREFEKMKE
DREVLRVIFPTGDSKVVLPCNLQRMIWNAQKIFHINTRLPSDLHPIKVVEGVKELSKKLV
IVNGDDPLSKQAQENATLLFNIHLRSTLCSRRMIEEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPD
FDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
AAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGVGGPTGM
FFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS
PSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggagcgccctccggggacagcgcgtgcccgctgcgcaccatcaagcgcgtg
cagttcggggtcctcagccccgatgagatgaaacggatgtcagtgacggaaggtgggatc
aaatatcctgagacaacagaagggggtcgccccaagctgggaggcttaatggaccctcga
cagggagtcattgaacggacggggcgatgccagacgtgtgctggtaacatgacagagtgt
cctggccattttggacacattgagctggccaagccggtcttccatgttggtttcttgggc
aagacaatgaaggttctccgctgcgtttgctttttctgctccaagctgttggttgactct
aacaaccccaaaattaaagacattctgacaaaatccaaagggcagcccaagaagcgcttg
acccatgtttacgacctctgcaaaggcaagaacatctgcgaagggggagaggagatggac
aacaaattcggagtggagcagacagagggtgatgaagacatctcaaaggagaagggtcac
ggtggctgtggtcgctaccaaccaaggatccggcgctcaggcctagagctgtacgctgag
tggaagcacgttaatgaggactcccaggagaagaagatcctgttgagcccagagcgggtg
catgagatcttcaaacggatctcggacgaggagtgcttcatcctgggcatggaccccaaa
tacgcccggcctgagtggatgatctgcaccgtgctccccgttccaccgctctcagtccgg
cctgctgttgtcatgcaaggctctgccaggaatcaggatgacttgactcacaaactggct
gacattgtgaaaattaacaaccagctgcggaggaatgagcagaacggggcggccgctcac
gtcatcgccgaagatgtcaagctgctgcagttccatgtggccaccatggtggacaacgag
ctgcctggactgcccagggcgatgcagaaatctggaaggcctcttaaatccctgaagcag
aggctgaaggggaaggagggacgcgtgcgagggaacctgatggggaagcgagtggacttc
tctgcccggacagtcattacgccggatcctaacctctccatcgaccaggtgggcgtgccc
cgctccattgctgccaacatgaccttcgcagagatcgtgacgcccttcaacaacgacagg
ctgcaggagttggtgcgcagagggaacagccagtatcccggagctaagtacattatccgg
gacaatggcgacaggattgacctgcgttttcaccccaagcccagcgacctccacctgcag
atcgggtacaaggtagaacggcacatgtgcgatggcgacattgtcattttcaatcggcaa
ccgacactgcacaagatgtccatgatggggcacagggtccgcatcctgccgtggtccacc
ttccgcctcaatctcagtgtgaccaccccttacaatgcagacttcgatggcgacgagatg
aacctgcatctccctcagtccctggagacgcgagccgagatccaggagctggccatggtg
ccccgcatgatcgtcacgccacagtccaacaggcccgtcatgggcatcgtgcaggatact
ctgacggctgtccgcaagttcaccaagagagacgtcttcctagagaggggcgaggtgatg
aacctgctgatgttcctctccacctgggatggcaaagtgccccagccggccatcctcaag
cctcgcccgctctggaccgggaaacagattttctccctgatcatccctggtcacatcaac
tgcatccggacgcacagcacccacccggatgatgaagacagcggcccttacaagcacatc
tcccccggagacaccaaggtcattgtggagaacggggagctcatcatgggcatcctgtgt
aagaagtccctgggcacctcagccggctcgctggtccacatctcctacctggagatgggc
catgacgtcacccgcctcttctacagcaacatccagacagtcatcaacaattggctgctg
attgaaggtcacaccatcggcattggggactccattgcagatgccaagacctaccaggac
atccagaacaccatcaagaaggccaagcaggatgtgatagaagtcattgagaaggcccac
aacaatgagctggagcccaccccagggaacacgctgaggcagacctttgagaaccaggtc
aaccggatcctgaacgatgctcgagacaagaccggctcttctgcccagaagtccctttcc
gagtacaacaacttcaagtccatggtggtgtcgggcgccaagggctccaaaatcaacatc
tcccaggtcattgctgtggtgggccagcagaacgtggaagggaagcgcatcccttttggc
ttcaagcaccggacgctgccgcacttcatcaaggacgactatgggccggagagcaggggc
ttcgtggagaactcgtacctggctggcctcaccccgacagagttcttcttccacgccatg
ggaggcagagaagggttgattgacacagctgtcaagacagctgaaactggttacatccag
cgtcggctgatcaagtcaatggagtcggtgatggtgaagtatgacgccacggtgcgcaac
tccatcaaccaggtggtgcagttacgctacggtgaggatgggctggcaggggagagcgtg
gagttccagaacctggccacactcaagccctccaacaaggcctttgagaagaagttcaag
tttgactacaccaacgagcgagctctgcggcgcaccctgcaggaggagatggtgaaggac
atcctcagcaatgcacacatccagaacgaactggagagggagtttgagaagatgaaggag
gaccgggaggtgctaagggtcatcttccccacaggggacagcaaggtggttctgccctgc
aacctgcagcgtatgatctggaatgcccagaaaatcttccacatcaacacgcgcctgccc
tctgacctgcaccccatcaaagtggtggagggagtgaaggagctaagcaagaagctggtg
attgtgaatggagacgacccgctaagcaagcaggcgcaggaaaacgccacgctgctcttc
aacatccacctgcgctccacactctgcagccggcgcatgattgaggagttccgcttgagc
ggggaggccttcgactggctgctgggagaaattgagtccaaattcaaccaggccattgct
caccccggcgagatggtgggggcgctggctgcccagtccttgggcgagcctgccacacag
atgaccctgaacaccttccactacgccggggtctcggccaagaacgtgacgctgggagtg
cctcgactcaaggagttgatcaacatctccaagaagcccaagaccccctcgctgacggtc
ttcttgctggggcagtctgcccgcgatgctgagagagccaaggacatcctgtgccgcctg
gagcacaccacccttcgcaaggtgacggccaacacggccatctactacgaccccaacccg
cagaacacggtggtggccgaggaccaagagtgggtgaacgtgtactatgagatgccggac
tttgacgtgacccggatctcgccctggctcctgcgggtggagctggaccgcaagcacatg
acggaccgcaagctcaccatggagcagatcgcggagaagatcaatgctggctttggggat
gacctcaactgcattttcaatgatgacaatgctgagaagctggtgctgcggatccgcatc
atgaacagcgacgagaacaagatgcaggaggaggaagaggtggtagataagatggatgac
gatgtcttcctgcgctgcattgagtccaacatgctgaccgacatgactctccaaggcatt
gagcagatcagcaaggtatacatgcacctgccccagacggacaacaagaagaaaatcatt
atcacggaggatggggagttcaaggccctgcaggagtggatcttggagactgacggcgtg
agcctcatgagggtgctgagcgagaaggatgtggaccccgtgcgcaccacctccaatgac
attgtggagatcttcacggtgctgggcatcgaggcggtgaggaaggccctggagagggag
ctgtaccacgtcatctcctttgacggctcttacgtcaactaccgccatctggcgctgctc
tgcgacaccatgacctgccgtgggcatttgatggccatcaccaggcatggcgtcaaccgg
caggacacggggccgctcatgaagtgctcctttgaggagacggttgatgtgttgatggaa
gcagctgctcacggggaaagcgaccccatgaagggcgtctcagagaacatcatgctgggc
cagctggccccagcaggcactggttgctttgacctcctgttggatgccgagaagtgcaaa
tacggcatggagatccccaccaacatcccgggcttgggcgtgggcgggccgaccggcatg
ttctttggctctgctcccagccctatggggggaatgtctcccgccatgaccccatggaac
caaggtgccacaccagcatacggagcatggtcgcccagtgttggaagtggaatgactccg
ggggcagctggcttttctcccagcgccgcctcagatgccagcggttttagtccaggctat
tctccagcctggtcacccaccccaggctctcctgggtctccaggaccttccagcccatat
atcccatcaccaggtggagccatgtctcccagctattccccaacttctccggcctacgaa
ccccgctcccctggagggtacacaccacaaagccccagctacagcccaacatcgccttcg
tacagcccaacgtcaccctcgtactcacctaccagcccgaactacagccccaccagcccc
agctacagcccaacatcacccagctattctccaaccagccccagctacagccccacatca
cccagctacagccccaccagccccagctatagccccacgtcgccaagttattctcctact
agccccagttacagcccgacctcgcccagctacagccccaccagtcctagctacagcccg
acctcacccagttacagccccaccagtcctagctacagcccaacatcacctagctacagc
cccaccagccctagctacagtccaacctcacccagctacagccccaccagccctagttac
agccccaccagccccaactacagcccaacatctcccaattataccccaacttctcccagc
tacagcccaacttcccctagctatagcccaacatcacctaactatacaccaacttctcca
aactacagcccaacttcgcctagctattctcctaccagtccctcctacagccccacctca
cccagctactctccctccagtccgcgctacaccccacagtcgcccacttacaccccctca
tcgcctagttacagccccagctcccccagctacagcccaaccagccccaagtacacccca
accagcccatcctacagccccagctcaccagaatacaccccaacgtcacccaagtacagc
ccaaccagccccaagtacagcccgacttcgccgaagtacagcccgacttcgcccacctac
agccccaccacaccaaagtacagcccaaccagccctacctactcgccaacgtctcctgtc
tacacgccgacctcaccaaagtacagccccacaagtccaacttactcgccgacatccccc
aagtacagcccaacatcgcctacctattcgccaacctccccaaaaggctccacatactcc
ccaacttcccctggctacagccccacttcgccaacctacagcctcaccagcccagctatc
agtccagatgacagtgatgaagaaaactga
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integrated database retrieval system
