Hemicordylus capensis (graceful crag lizard): 128331018
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Entry
128331018 CDS
T08891
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04140
Autophagy - animal
hcg04142
Lysosome biogenesis
hcg04148
Efferocytosis
hcg05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
128331018 (VPS39)
04140 Autophagy - animal
128331018 (VPS39)
04148 Efferocytosis
128331018 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128331018 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hcg04131
]
128331018 (VPS39)
Membrane trafficking [BR:
hcg04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
128331018 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_WDR19_1st
Hira
EcoR124_C
SAM_CEP-1_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
128331018
NCBI-ProteinID:
XP_053120671
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All DBs
Position
1:complement(74075334..74118131)
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AA seq
884 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIQKEIGEVTTSESGCCNRF
EVTLEKSNKNFSKKIQQIHVVSQFKILVSLSENNVYVHDLLTFQQITTVPKAKGATLFTC
DLQHSETGEEVLRMCVAVRKKLQLYYWKDRDFHELQGDFSVPDVPKSMAWCKNSICVGFK
RDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGTCTQKCALN
WTDIPIAMEHQPPYIVAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIVYVASNHF
VWRLIPVSIATQIQQLLQDKQFELALQLADMKDDSDSEKKQQIHHIKNLYAFNLFCQKRF
DESMQVFAKLGTDPTHVMGLYPELLPSDYKKQLQYPNPVPVLSPAELEKAHLALIDYLTQ
KRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRL
ENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQY
LQHLGTENLNLIFAYSVWVLRDFPEDGLKIFTEDLPEVESLPRYKVLSFLIENFKNLAIP
YLEHIIHTWEEAGSEFHNCLIQLYCEKVQGLMKEYLSSFPLDKATVPAGEEEGELGEYRK
NLLFFLETSCCYDAEQLISDFPFDGLLEERALLLGRMGNHEQALFLYVHILKDTKMAENY
CHKHYDRSKDGNKDVYLSLLRMYLSPPSVHCLGPIKMEILEPKANLQAALQVLELHHSKL
DTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFGQVLKNLLHAEFLRVQEERILHQQV
KCIITEEKVCSVCKKKIGNSAFARYPNAIVVHYFCSKEVGAVDT
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgccgattttggaaaaactgcctctgcagatcgactgt
ctggctgcttgggaggaatggcttctcgttgggactaaacaaggacacctccttctttat
agaattcaaaaggaaattggagaggttacgacatcagaaagtggctgttgcaacagattt
gaagtgactctagagaaatcaaacaagaacttctccaagaagattcagcagatccatgtt
gtatcccaattcaaaattttggtcagtttgtcagaaaacaacgtttatgttcatgacctg
ttgacatttcaacagatcacaactgttcccaaggcaaagggtgcaactctcttcacatgt
gatctgcagcactctgagacaggagaagaagttctgaggatgtgtgtggcagttagaaag
aagctgcagctgtattactggaaggacagagatttccacgagctgcagggagacttcagt
gtgccagatgtacccaagtcaatggcatggtgtaaaaattccatctgtgtgggtttcaag
agagactactatctcataagggtggatggaaaagggtcaatcaaggaactcttccccaca
ggaaagcagcttgagccactggtagcccctttggcagatggcaaagttgctgtaggccaa
gatgatctaactgttgtgttaaatgaagaagggacctgtacccagaaatgtgccttgaac
tggactgatatcccaatagccatggaacaccagcctccatacattgtggcagtactgcca
cgatatgtagagatccgtacttttgagccccgtctcctggtgcagagcattgaactacag
aggcctcgcttcattacttctgggggcacaaatattgtgtatgtggccagcaatcatttt
gtttggcgcctcattccggtttccattgcaacccaaatccagcagcttctccaagataaa
caatttgaattggctctgcagttggcagatatgaaagatgactctgatagtgaaaagaaa
caacaaatccatcacattaagaatctctatgctttcaacctcttctgccaaaaacgcttt
gatgaatccatgcaagtctttgccaaacttggtacagatcccacccatgtaatgggtctc
tatcctgaactgttgcccagtgattacaagaaacagctccagtatcccaacccagtgcca
gttctttccccagcagagctggagaaagcacatttggcacttatagactacctaactcag
aaaagaagtcagctggtgaagaagctgaatgattcagaccatcagtctagtacttcccca
cttatggaaggaactcccaccatcaaatcaaagaaaaaactgctgcagatcattgacaca
actctgttgaagtgctacctccataccaatgtagccctagtggcaccactgttgagactg
gaaaacaatcattgccacattgaggaaagtgagcatgtgctcaagaaagcccataaatac
agtgagctgatcatactatatgagaagaaaggtctgcatgaaaaagccttgcaggtgcta
gtggaccagtcaaagaaagctaactcgcctttgaagggccatgagaggacagtacagtat
ttgcaacatttgggaactgagaacttgaatttaatatttgcctattctgtttgggtgctt
agagattttcctgaggatggattgaaaatatttacagaagatcttcctgaggtggaatct
ctcccacgctacaaggttcttagcttcttgatagagaactttaaaaacctggctattccc
tatttggaacatataatccatacatgggaagaggctggttcagaattccacaactgcctg
attcagctctactgtgagaaggtgcaaggcttaatgaaggaatatctcagctcttttcct
ctggataaagccacagtgcctgcaggagaagaggagggggaattaggagaatacaggaaa
aatcttctcttctttcttgagacgtcctgttgctatgatgctgagcagctcatcagtgac
tttccctttgatggcctcctagaagaacgtgctctgttgttgggacggatggggaatcat
gaacaagcccttttcctatacgttcatatcctgaaggatacaaaaatggctgagaactac
tgtcacaaacactatgacagaagcaaagatggcaataaagatgtgtacttgtctctgctc
cggatgtatctctcaccacctagtgttcattgcttgggaccaataaaaatggaaatacta
gagcctaaagccaatctccaggctgcattgcaagttttggaacttcatcacagcaagttg
gatactaccaaagctataaacctcctcccagcaaatactcaaattagtgagatccgaatc
ttcctggaaaaagtccttgaagaaaatgcccagaagaagcggtttggtcaagttcttaaa
aacctcctccatgctgaattccttagagtacaagaggaacggattttacatcagcaagtg
aaatgtataatcacagaagaaaaggtttgcagtgtgtgcaaaaagaagattggaaatagt
gcctttgcccgctatccaaatgcaatagttgtgcattatttctgttccaaggaagttggt
gcagtggacacatga
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