Hemicordylus capensis (graceful crag lizard): 128331672
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Entry
128331672 CDS
T08891
Name
(RefSeq) collagen alpha-6(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04510
Focal adhesion
hcg04512
ECM-receptor interaction
hcg04518
Integrin signaling
hcg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128331672
04518 Integrin signaling
128331672
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128331672
09142 Cell motility
04820 Cytoskeleton in muscle cells
128331672
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hcg04147
]
128331672
00536 Glycosaminoglycan binding proteins [BR:
hcg00536
]
128331672
Exosome [BR:
hcg04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128331672
Glycosaminoglycan binding proteins [BR:
hcg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128331672
Hyaluronan
Extracellular matrix or blood plasma proteins
128331672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
vWA_SIBA-E
VWA_CoxE
YflT
Motif
Other DBs
NCBI-GeneID:
128331672
NCBI-ProteinID:
XP_053121348
LinkDB
All DBs
Position
6:complement(102102267..102232861)
Genome browser
AA seq
2748 aa
AA seq
DB search
MTLLSAYREKDFFYSCFSFMGTFRMDKWNQVFILVCLSALFSTADANTAVCREASVADIV
FLVDGSWSIKMENFKRMQNFLYSLVNGFDTGEDKIRIGLIQFSDKPYNEFFLNTYHHKQD
ILEKIQTLHYRGGNTYTGASLMFMLDNQFNEMAGSRRSEGVPQIAVVITDGKAQDKISEP
AAAVKKAGIIVYAVGVKDAVLSELQEIASDPDDTHVYSVADFDALQGISQNVLQVLCTTV
EEASRHITQVSPVCQKATVADVVFLVDSSTSIGTENFQKVKNFLNTLISSLDVGSNQIRI
GLAQYSSATFTEFLLNQYSLKNDILEQIQNLPYRGGSTYTGAALDFIREGYFTESAGSRA
QEHIPQVAILLTDGESNDEVKGPASKLKARGISLYVVGIGIQDTTELKAIASRPFDRFLF
NIDNFDILQDLSSNLLQTVCFAVESQVKAFTKHYADIVFLVDSSERMGSSTFEEVKKFIL
QVVEQLDIGADKYRVGFAQYSREGQIEFLLNTYENKEDVLNHLQRSVIFMGGPLQTGSAL
QFLQDVYFTVEAGSRFNQGTPQFTVVVTSAKSEDDVEEAATELKEMGVKVVTVGILNSDR
KEMEVIATSPLVYQLSDVESFNQLQKNITDLLEVPVQQQYEEALEAEVPAVCSSATVADI
VFLVDESSRIGQRNFQLIRTFLLRVFGALDISPVNVRVALVLYSDEPRLEFDLHTFDDKL
EAVNYLKKLPYRGGQTYTGAAIDFLRKKVFTKEAGSRKDQGVQQLAVVITDGQSLDNFTE
PASKLRRSKVTVYAVGIQNISESGQLYKIASHPPRKHVTNLESFLQLSNIGWKIKKRLCT
EIVSQTFVIPVRSRNVKEGCEETEEADIYFLIDGSGSIYPNDFHDMKVFMNEMISLFQVG
ADSVRFGVVQYGSAPQTEFLINQYNSAAQLKEAIKVIQQLGGGTRTGDALRYMQGLFKRA
ARDKVPQFLIIITDGESQDEVTDAAKELRQGGITIYAIGVKNAVEKELEQIAGTKDRMFF
VNDFDSLKLIKHDIVRDICSPEACKNLKADIILLIDTSESMRQDQFEKTKEFIHLIVNRS
DIGVDKVQVGLLQYSSKQKAEFLLNRFSNKADMREKISAMEQMKEGTKTGEALAFASPHF
DQSKGGRPGVKQYLIVLTDGESDDKVGKPARALRDKGVTIYAIGILRANNTQLLEMAGIQ
ENVFFEDNFDSLKFLDKEILFEVCNPKDVCKKTKVADIMFVVHGSRDITELQFKGIQQLM
EAVVNDSVVGKDNVQFGTIVFSTLPEEKFSLKEYSTKAGVREAISKLTPVEGFAFTARAL
NFARERFGAAYSGRTSALGVTRLLVLITDEATSPADRHNLPAVAEVLKQEGINVMAIGMD
EARVTELEEIVGDNGRWFFAPSYNALENLHENITHVICDDSRSACGTQEADLVFLIDGSE
SILKHSFLVMKTFMKDIVDNFIIAQDKVRIGVAQYSSDPQKEFYLNEFYTNDGIKGKIDS
IAQLNAGTFTGKGLRFVKSFFEASNGSRKNKGVLQFLIVMTDGESNDEVDEAAIALRNDG
INVFAVGIGIQNSFELLRIAGNAQRIFVVENFEVLQTIKQKMITEICTVEDRPSQDCNID
ISVGVDISNRERQTLHMNVKKMQTYLPVLLQRIGSTINISCTAESPVNIRFRYQVFAGNG
QSLFDSDFEAYSEEIIQKFLAVQTTVDTYLNIGSLQSFWDRSLSLATAKVKVLLVFTDGP
DDRIETLKTTVDFLRVKGLDALLMIDLENTERHQELQELEFGRGFRYMQPLHFGDPALPS
LLWREIDAIAERECCCVWCKCVGQDGFRGIPGTAGSKGSVGMKGFPGYYGEEGATGDRGP
TGLNGTQGEDGCRGARGLRGVKGYRGNKGEDGDDGLDGINGQEGERGSPGSSGRKGSMGR
RGRKGSGGEPGERGEPGLRGDAGVPGIDNNAVGPPGQRGKTGMQGEPGPDGIRGEPGEEG
ENGPNGYRGRPGLKGEQGTKGEPGYPGEIGFQGQPGTPGLQGISGPPGLPGLPGFRGSPG
ITGVTGSVGKPGPGGQKGEYGDLGAKGPPGPSGPRGLRGLDGDNDYGLPGRKGAKGQSGF
PGYPGLQGEDGDSGIAGDNGAKGIRGQRGNSGMPGSVGDPGEQGLPGRMGHKGPNGIIAM
TPCELVNLTRENCRLNTCPVYPTEVAFSLDMSEDVTPESFERMKDIMTSLLKGIQLSRRN
CPTGARVSVLSYNTNIKYLIRFAEFQRDHLLMEAIRRIPLEKSSGRRNIGAVMRFVARNV
FKRYRQGILMRKVAIFLTTGPSQDTTSINTAMLEFTALGITPVVIALSEVPNVRQAFLAD
DTRRFQLAVWESKEDENLDSVFRCALCYDKCKPDPECEVAAPPPIIINMDLTYIIDSSRN
VGSEEFETMKEFVSNMLDYFVIAPQPMELDGGARVALVQQAPRHFTLNRTSSPVHEEFDL
VTYDNKNLMKKHILESVRQLEGPSAIGHALQWTVNNVFLEAPMPRKHRVIFTILGSKTSS
WDRQKLREMSLEAKCQGFTMFTLALGRGVDDTEITELSSVPVEQHLLQLGRSDKLELPYA
LQFSRAFLNLLRRGTNPYPSPGLQEECENLDRGDTYQQLIAGTDRIIFPVLDYGAALQSA
EQEKIMEATQEPVKYREEEEYGYMENEHFTKNNIHHGNRTENEEHFEQVQRTGDACVVDM
DRGECEDYTLKWHYNKEQDMCSQFWYGGCGGNKNRFETQEECEALCLE
NT seq
8247 nt
NT seq
+upstream
nt +downstream
nt
atgacactactgtctgcttacagagaaaaggactttttctattcttgcttttctttcatg
ggtacattcagaatggacaaatggaaccaagtttttattcttgtgtgtctgagtgctttg
ttctccactgctgatgccaacactgctgtctgcagggaagcttctgttgcagacattgtg
ttcctggtggatggatcctggagtataaaaatggagaacttcaaacggatgcaaaacttc
ctgtacagtttggttaatggttttgacactggagaggataaaatccggattggactgatt
caattcagtgataagccctacaatgaattcttcttgaacacctaccaccacaaacaggac
atcttagagaaaatacagaccttgcactacagaggagggaatacatacactggagcaagt
ttgatgtttatgctagataaccagttcaatgaaatggctggaagtcgacgcagtgaaggt
gtccctcagattgcagtagtgataactgatgggaaagctcaggataaaatcagtgagcca
gctgcggcagtcaagaaggcaggcatcatagtctatgctgtaggtgtcaaagatgctgtt
ttgtctgagcttcaggaaattgctagtgacccggatgacacacatgtctacagtgtggca
gattttgatgctctgcagggtatctctcaaaatgtgcttcaagtgctttgtactacagta
gaggaagcttctcgacatatcacccaggtttcaccagtatgccaaaaagccactgtagct
gatgtcgtatttttggtggacagttcaaccagcattggtacagagaatttccaaaaagtg
aaaaacttcctgaacacactgatttccagtcttgatgttggcagcaaccagatcagaatt
ggattggcccaatacagtagtgctaccttcacagagtttctgctaaatcagtattccttg
aaaaatgatattctggaacaaatacagaatttgccctaccggggtggaagcacttacaca
ggtgctgccttagatttcatcagagaagggtacttcactgaatctgctgggagcagagca
caggaacatatcccacaagtagccattctactcacagatggagaatctaatgatgaagtc
aaaggtccagccagcaaattgaaggcaagaggaatctcactttatgtggtaggaattggc
atccaggacactactgagcttaaagcaattgccagcaggccttttgataggttcttgttc
aatattgacaattttgatatccttcaagatctttctagcaatcttctccaaactgtgtgc
tttgcagtggagagccaggttaaagcatttacaaagcactatgctgatattgttttcctt
gtggactcttctgaaagaatgggatcctctacctttgaagaagtaaagaaattcattttg
caagttgttgaacaactagacattggggctgacaaatacagggttggttttgcacaatac
agccgagaagggcagatagaatttttgctgaacacttatgagaataaggaagatgttctt
aaccaccttcagagaagtgttatattcatgggtggccctctacagactggaagtgcgctg
caatttctgcaagatgtctattttacagtggaagctgggagtcgatttaatcaagggaca
ccacagttcacagtggttgtcacctcagccaaatctgaggatgatgtcgaggaagctgca
acagagctgaaagagatgggagtaaaagtcgtaacagttggcatcttaaattccgacagg
aaagaaatggaggtgattgctacgtctcccttggtttaccagctcagtgatgtggagagc
ttcaatcagcttcaaaagaatataacagatcttttggaagtaccagttcagcaacagtat
gaggaagccctagaggctgaagtgccagcagtttgttccagcgcaactgtagcagacatt
gtcttccttgtggatgaatccagcaggattggtcaaaggaatttccagctgatcaggact
tttctgctcagagtttttggtgccttagatatttccccagttaatgttcgtgttgctttg
gtactttacagtgatgagccaagattagagtttgacctccatacatttgatgacaagtta
gaagctgtgaactatctgaaaaagttgccatatcgtggtgggcaaacatacactggtgct
gccattgatttcctgaggaaaaaggttttcaccaaggaggcaggtagcaggaaggatcaa
ggagtacagcagctggctgtggtgatcactgatggccagtcactagacaacttcactgaa
cctgcatccaagcttcgacggagcaaagttacagtgtatgctgtggggatccaaaatatc
tcagaaagcggccagctgtacaaaattgcatctcatcccccaagaaaacatgtcaccaac
ctagaatcttttttgcagttatcaaatattggatggaagataaagaaacgactttgtact
gaaattgtttcacaaacctttgtcattccagtgcggtcccgtaacgtcaaagaaggctgt
gaggaaacagaggaagcagacatttatttcctgattgatgggtcgggcagcatttatcca
aatgacttccacgacatgaaagtcttcatgaatgaaatgatcagtttgtttcaggttggc
gccgacagcgttcgttttggggtggttcagtacggaagcgctccacaaacagaattcttg
ataaatcagtacaactcagcagcacaattaaaggaagccatcaaggtgatccaacagcta
ggtggcggcactagaactggagatgctttacgatacatgcagggcctgtttaaaagggct
gccagggacaaagttccccagttcctcatcattattacagacggtgaatcccaggatgag
gtaactgatgcagcaaaagagctgcgacagggagggatcacgatatatgccattggtgtc
aagaatgccgtcgaaaaagaattggaacaaatagctgggacgaaagaccggatgtttttt
gtgaatgactttgattccctcaagcttatcaaacatgacattgtacgtgatatctgctct
cccgaggcctgtaagaatttgaaagcagacattatcttgttaattgatacttctgaaagt
atgagacaagatcagtttgagaagacaaaggaattcatacacttgattgtgaacaggtct
gacatcggggttgataaagtgcaggttggactgctccagtatagctcaaagcagaaagca
gagttcctactcaacagattcagcaacaaggctgacatgagggaaaaaatttctgcaatg
gagcagatgaaagaaggaacgaagactggggaagctctagcctttgcctctcctcacttt
gaccaatcgaaaggagggcgtccgggagtaaagcagtatctgatagtgctcacagatgga
gaatcagacgacaaagtgggaaagcctgccagagcccttagagataaaggagtcactatc
tatgccattggaatactaagagccaacaacacccaacttttagagatggcgggcattcag
gaaaatgtgttttttgaagataattttgattccctgaagtttttggataaggagatcctg
tttgaagtttgcaaccccaaggatgtgtgtaaaaaaacaaaagttgctgatatcatgttt
gtcgtgcatggatcaagagatattacagaactacaattcaagggtatacagcaacttatg
gaggctgttgtaaatgactctgtggtgggaaaagacaatgttcagtttgggactatcgtc
tttagcacccttccagaagagaaattctctttgaaagagtactccacaaaggctggagtc
agagaagccatttcaaagctgacacctgtggaagggtttgcctttacagccagagcactg
aattttgccagagaaaggtttggtgcagcttacagtggtcgtacatcagctcttggagtc
acccggctccttgtgcttatcactgatgaggcaacttcgccagcggacagacacaatctc
ccagcagtagcagaggttttgaagcaagaaggcatcaatgtcatggccattgggatggat
gaggccagggtaacagaacttgaagaaattgtgggtgacaacggaagatggttttttgct
ccaagttacaatgcattggaaaatttgcatgaaaacataactcatgttatatgtgatgac
tccagatcagcttgtggcactcaagaggcagaccttgtgtttctcattgatggctcagaa
agcatcttgaagcatagtttcttggtcatgaagacctttatgaaggacattgtggataat
ttcatcattgctcaggacaaagtccggattggggtggcccagtacagcagtgatcctcag
aaagaattttatctcaatgaattctacaccaacgatggcataaaggggaagattgatagc
attgcccagttaaacgcaggcacattcactggcaagggactgaggtttgtcaagagcttt
tttgaggcttccaatgggagccgtaagaacaaaggagtgttgcagttcctcattgtcatg
actgatggggagtccaatgatgaggtggatgaggcagccattgctctaaggaatgatggg
atcaatgtatttgcagttggaatagggatccaaaactcctttgagctgcttcgaattgct
ggtaatgcccaaaggatatttgttgtggagaattttgaagtactgcagactattaagcag
aagatgattactgagatctgcactgttgaagatcgaccgagtcaagactgcaacatagat
atttctgtaggagttgatatttccaaccgtgagaggcagacattacatatgaatgtaaag
aaaatgcagacatacctgcccgtactcctgcagcgaatcggttccacaattaatatcagt
tgcactgctgagtctcccgtcaacatcaggtttagataccaagtgtttgctggaaatggc
cagtccttgtttgactctgactttgaagcatacagtgaagagattattcagaaattcttg
gctgtgcaaaccacggtggacacttacttgaacataggttccctgcagtccttttgggac
agatcgctcagcctggccactgctaaagtgaaggttctcttagtgtttacagatgggcca
gatgatcgcatagaaacgctcaaaacaacagtggactttcttcgagtgaaagggcttgat
gcacttttaatgattgacctggaaaacactgagagacatcaggaactccaggagcttgag
tttggtagaggtttcagatatatgcagcctttgcactttggagaccctgcacttccaagc
ctcttatggagagaaattgacgctattgcagaacgagaatgctgctgtgtttggtgcaaa
tgtgttggacaagatggatttcggggtattcctggaactgctggaagcaagggaagtgtg
ggcatgaaaggatttccaggctactatggtgaagaaggagcaactggagatcgtggtcca
actggtctgaatgggacacaaggagaagatggctgccgtggtgcaaggggtctcagggga
gtaaagggatatcgaggaaacaagggtgaggatggtgatgacgggcttgatggcattaat
ggacaagagggagaacgaggatctcctggatcatctggacgaaagggcagcatgggacga
aggggtagaaaaggctctggaggagagccaggcgagcgtggggagcctggcttaagagga
gacgctggggttcctgggattgataacaatgccgttggtcctcccggtcaaagagggaaa
acagggatgcagggagaaccaggaccggatggcattcgaggagaaccaggagaggagggt
gaaaatggtcccaatggctacagaggtcgtcctggcttaaagggtgaacaaggaactaaa
ggagaaccaggttatccaggagaaattggatttcaaggccaaccgggtacaccaggcttg
caaggaataagtggaccaccaggactaccaggcttaccaggcttccgaggtagtccagga
atcactggtgtaactggctctgtagggaagcctggaccaggagggcaaaaaggtgaatat
ggtgatcttggagcaaaaggcccacctggaccatctggaccaagaggtctgcgtggacta
gatggtgacaatgactatgggctaccaggaaggaaaggagcaaagggtcagtctggtttt
cctggataccctggactgcagggagaagatggtgactcaggcattgcaggagataatggt
gccaaaggaattagagggcaaaggggcaatagtggaatgccaggctcagtgggtgatcca
ggagaacaaggactacctggaagaatgggtcataaaggaccaaatggcataatagctatg
acgccttgtgaacttgttaaccttacacgagaaaactgccgtttgaacacgtgtccagta
tatccaactgaggtggcgttttcccttgatatgtctgaagatgttaccccagagtccttt
gaaaggatgaaagacattatgacctctttgctgaagggcatacaactaagcagaagaaac
tgccccactggagctcgagtgtcagtactttcatacaacaccaacataaagtacctcatt
cggtttgctgaattccagagagatcacctccttatggaggcaattcggaggataccactg
gagaagtcctcaggcagacgaaatattggagcggtcatgagatttgttgccaggaatgtt
tttaaacggtatcgccaaggcatccttatgaggaaagttgcaatatttctcaccactggc
ccatcacaggatacaacctccatcaatacagctatgttggaattcaccgctctaggtatc
acacctgtggtcattgccctcagtgaagtgcctaatgtacgacaggcctttttggcagat
gatacccgtcgatttcaattggctgtttgggaatccaaggaggatgagaacttggacagt
gtattccgttgtgctctctgctatgataaatgcaagcctgatccagaatgtgaagtggca
gctcctcctcccattataataaacatggacttaacctacatcattgacagctctcggaat
gttggaagtgaggagtttgagacgatgaaggaatttgtgagcaacatgttagattatttt
gttattgctccacagcccatggagctagatggaggcgcaagggtggcattggtgcaacag
gctccacgacatttcacactcaacagaacctcaagcccagtgcatgaagaatttgatttg
gtcacatatgacaataaaaacttgatgaaaaagcacatcctagaatctgttcgccagctg
gaaggtccatctgccattggtcatgccctacagtggacagttaacaatgtgtttttggaa
gcccccatgccaagaaaacacagagtcatctttacaatacttggaagtaagacaagttcc
tgggacaggcagaaacttagagaaatgtcgctagaggccaaatgccaaggattcaccatg
ttcaccttagcacttggaagaggagttgatgacacagagatcacagaactttccagtgtc
ccagtggagcagcacctattgcaactgggccggagtgataaacttgaattgccatatgca
ctgcaatttagccgggccttcttaaaccttttaagacgagggacaaatccttatccatct
ccaggcctacaggaagaatgtgaaaatctggatcgaggagatacttatcagcagctaata
gctgggactgacaggattatatttcctgtattggattatggtgctgctttgcaatcagca
gagcaagaaaaaattatggaggccacccaagaacctgtaaagtacagagaagaagaggaa
tatggttacatggagaacgagcatttcacaaagaacaatattcatcatggtaacagaaca
gagaatgaagaacactttgagcaagtacaaagaaccggagatgcctgtgttgtggatatg
gaccgtggtgagtgtgaagattacactttgaagtggcattacaacaaggagcaggacatg
tgttcccagttctggtatggtggctgtggtgggaacaaaaacagatttgaaactcaagaa
gaatgtgaagctttatgcctagagtga
DBGET
integrated database retrieval system
