Hemicordylus capensis (graceful crag lizard): 128333020
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Entry
128333020 CDS
T08891
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hcg03009
]
128333020 (IGHMBP2)
03012 Translation factors [BR:
hcg03012
]
128333020 (IGHMBP2)
Enzymes [BR:
hcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128333020 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
128333020 (IGHMBP2)
Ribosome biogenesis [BR:
hcg03009
]
Eukaryotic type
Other ribosome biogenesis factors
128333020 (IGHMBP2)
Translation factors [BR:
hcg03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
128333020 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
ResIII
Helicase_RecD
Viral_helicase1
nSTAND3
DEAD
UvrD-helicase
AAA_16
AAA_22
IstB_IS21
SLFN-g3_helicase
Flavi_DEAD
AAA
AAA_25
Zot
DnaB_C
PhoH
VWA_2
NTPase_1
ABC_tran
DAO_C
NPHP3_N
IBR
ATPase
Motif
Other DBs
NCBI-GeneID:
128333020
NCBI-ProteinID:
XP_053123961
LinkDB
All DBs
Position
1:136955203..137072290
Genome browser
AA seq
989 aa
AA seq
DB search
MVTLVQDFVSRQVELLKEEREAEISEARAWQESISLKELQRRGVCLLKLEVASQRTGLYG
RLLVTFQPRKHGSEAELPCSSFGPGDIVGLYETASQGDQLSTGIVTRITPKSVTVAIDEP
QSNLVSLDQVNAYRLLKLANDVTYKRLKRALNTLSQYRSGPASGLIDVLFCSSEPSDTND
AKLLRFYNESLDASQKEAVCFSLAQKELAIIHGPPGTGKTTTVVEIILQAVQQGLKVLCC
APSNIAVDNLVERLSSCKERILRLGHPARLLESIQHHSLDAVLARGDNAQIVADIRKDID
QAFAKTKKTQDKGERSHFLNEIKTLRKELKEREEAAMTEILTQANVVLATNTGASSDGPL
KLLPDNHFDLVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTIISHKAAAEGLSLS
LMERLLQKYGDRVMKMLTVQYRMHQAIMQWASTEMYEGRLSAHHSVAQHLLKDLPGVAST
EETSIPLLLIDTAGCGLLELEVEDEQSKGNPGEARLVGLHIQALVEAGVKARDIAVIAPY
NLQVDMLRELLCHKYPDLEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAI
TRARRHVAVICDSRTTGNHSFLKRLVDYMNKCGEVRTAFEYLDDIVPENYSHKSSQGLSE
QEKRPKHNVPSAPKAGAEKPRGKPAKQTGQRPEECTVPGRAWIRTEQTEVKDNSSKHKAR
ILEFLESSESQLDFPSSLNAHDRLVVHQLAEEYGLQHVSTGEGRERYISIRKRNAATDLP
LGDAKACEQKLPCRSPSPLEAIHTHIEERETCASTGKVDLKALHRERVEREKAKREQREK
QSQELDVKLQEITGKKQKNEAKGKAAVKPRMESTAEEDFDAMISAVVKADNTCFSPKCKA
NVTTLGQLCLHCNKRFCLSHHVPEVHGCGEKAKAHARQRISREGVLYAGSGLKDKSLDPV
KRAHLQRRLDKKLNELTSQRKSKKKDKDK
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggtgacgcttgttcaggactttgtgtctcggcaggtggagctactaaaggaggaaaga
gaggccgagatttcggaagccagggcatggcaagaaagcatctccctgaaagagctgcag
cgcagaggggtctgcttgctgaagcttgaagtagccagtcaaagaactggattgtatggc
cggttgcttgtaactttccagcctagaaaacatggttcagaagcagagctgccctgtagt
agttttgggcctggcgacattgtgggactttatgaaactgctagtcaaggtgatcagctt
tccacagggattgttacccgcataactcccaaatcagttactgttgcaattgatgagcct
cagagcaatctagtgagcttggaccaggtaaacgcctatcgtttgctgaaacttgccaat
gatgtcacatacaagagacttaaaagggcattaaatacattaagtcagtatcgctctggt
ccagcatctggccttattgatgttctcttctgttcttctgaacctagtgataccaatgat
gcaaagttgttgaggttctacaatgagtcactggatgcttctcagaaggaggctgtttgc
ttctcattggcacagaaagagcttgctatcatccacggaccacctggaacaggcaaaacc
acaactgtggtggagataatactccaagctgtgcagcaaggcttgaaagtcctgtgttgt
gctccctctaacattgcagtggataacctggtagaaagactctccagctgcaaagagcga
atactgcgccttggtcatccagctcgtctcttggagtccatccagcaccattcccttgat
gcagtcttggcacggggagataatgcccaaattgtagcagatatcaggaaagatatcgac
caagcattcgcaaaaaccaagaagacccaagacaaaggggagagaagccattttctaaat
gagattaagacactgagaaaagagctgaaggagcgagaggaagcagcgatgactgaaatc
ctgacacaagctaatgttgttcttgcaacaaatacaggagcctcatctgatggcccactg
aagctactccctgacaaccactttgatctggtagtgattgatgaatgtgcccaggcactg
gaagcaagctgctggatacctcttctgaaggccagaaaatgtatcctggctggagatcac
aaacagctgcctcctactatcatctctcacaaggctgctgctgagggtctttctcttagc
ttaatggaacgtctgcttcagaagtatggcgaccgtgttatgaagatgcttactgtgcag
tatcgaatgcaccaagccatcatgcagtgggcatctactgagatgtatgagggacgtctc
tcagctcatcactctgtagcacaacatttactgaaggacctgccaggagtggcttctaca
gaagagactagtattcctttgctgcttatagatacagctggctgtggcttgcttgagctt
gaagtggaagatgagcagtcaaaagggaatccaggtgaagcacgtcttgtgggcttgcac
atacaggctttggtagaggctggggttaaggcaagagacattgcagtcattgctccctac
aacctccaggtggatatgctaagggagcttttgtgtcacaagtacccagacctagagatt
aaatcagtggatggcttccagggaagagaaaaggaagccgttgtcctctcttttgtgaga
tctaatagaaaaggtgaagtgggattccttgctgaagaccggagaataaatgttgcaatt
actcgtgcccgacgtcacgtggcagtaatctgtgattctcggacaactggcaaccattct
tttctaaagcggctggtggactatatgaacaagtgtggagaagtacgcacagcctttgaa
tacttagatgacattgttccagaaaactattctcacaagagttctcagggtctcagtgag
caagaaaagagacctaaacacaacgttccctctgctccaaaggctggtgctgagaaacca
agaggaaaaccagcaaaacagactggacagaggccagaagaatgtactgtgccgggaaga
gcctggatcagaaccgagcaaactgaagtgaaagataattcaagtaaacataaagcaagg
atactggagtttctggagagcagtgagtcccagctggatttcccttcatcattgaatgct
catgacaggttggtggtccaccagttggctgaggagtatgggctgcagcatgtaagcact
ggagaaggtagagagagatacatcagtattcgcaaaagaaatgctgccactgacttacct
ttgggagatgctaaggcctgtgaacaaaagttgccctgcaggtctccaagccccctggaa
gcaattcatacccacatcgaagaaagagaaacttgtgctagcacagggaaagtggatctg
aaagcactgcacagggaacgggtggaaagggagaaagccaagcgagaacaacgggagaag
caaagtcaggaactggatgtaaaactccaggaaatcactgggaagaaacaaaaaaacgaa
gctaaagggaaagctgctgtgaaacccagaatggaaagtacagctgaggaagactttgat
gctatgatttctgctgttgttaaggctgacaacacgtgtttttcccccaaatgcaaagcc
aatgtaacaaccctaggacaactctgcctgcattgcaacaaacgcttttgtctcagccac
catgtccctgaggttcatgggtgtggtgagaaggccaaggcacatgcccggcagagaatc
agccgggaaggagttctgtatgctggaagtgggttgaaagacaaatccttggaccctgtc
aaaagagctcatctccagaggcgcctggacaagaaactaaatgaactaactagccagagg
aagagtaaaaagaaagacaaagataaatga
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