Hemicordylus capensis (graceful crag lizard): 128333493
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Entry
128333493 CDS
T08891
Symbol
LSM1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1 isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128333493 (LSM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128333493 (LSM1)
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128333493 (LSM1)
mRNA degradation factors
5'-3' decay
Lsm complex
128333493 (LSM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
128333493
NCBI-ProteinID:
XP_053124943
LinkDB
All DBs
Position
8:14163323..14181388
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AA seq
191 aa
AA seq
DB search
MRTNPSAASPLAPLAPSPRPAGACASGPGGERTGGGAAASRADAAAVGGGASAVSGGKMN
YMPGTASLIQDIDKKHLVLLRDGRTLIGYLRSIDQFANLVLHQTVERIHVGKRYGDIPRG
IFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEVQRVEQQAKQESEKLKAQALKERGL
SIPRADTLDEY
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacgaatccctcggccgccagcccccttgctcctctggctccttctccccgcccc
gccggagcatgtgcttccggaccgggcggggagagaaccgggggaggtgccgctgcttcc
agggccgatgctgctgctgtcggcggcggagcttccgctgtgtctgggggaaaaatgaac
tacatgccgggcaccgccagcctcatccaggacattgataagaaacacttggtcctcctt
cgagatggcagaacactgataggatacttgagaagcatcgaccagtttgcaaatttggtg
ttgcaccagacagtggagcgcattcacgtgggcaaaaggtatggcgacatcccacgtggc
atcttcgtggtgagaggtgagaacgtggtccttctgggagaaattgacctggaaaaggaa
agcgacaccccgttgcaacaagtgtcgatcgaagagatcctggaagtgcagcgggtggag
cagcaagcgaagcaggagtcggagaagctcaaagcgcaagccctgaaggagcggggcctc
tccatcccacgggccgatactttagacgaatactag
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