Hemicordylus capensis (graceful crag lizard): 128333629
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Entry
128333629 CDS
T08891
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hcg04147
]
128333629 (COL18A1)
00535 Proteoglycans [BR:
hcg00535
]
128333629 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
hcg00536
]
128333629 (COL18A1)
Exosome [BR:
hcg04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128333629 (COL18A1)
Proteoglycans [BR:
hcg00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
128333629 (COL18A1)
Glycosaminoglycan binding proteins [BR:
hcg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128333629 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF959
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
128333629
NCBI-ProteinID:
XP_053125291
LinkDB
All DBs
Position
1:complement(141948842..142202374)
Genome browser
AA seq
1876 aa
AA seq
DB search
MARTVPIIGFLLLLLTCGLSNAQGWGSWFWGSSEETTLPSTEAVSSQEEQTAQQLATFEA
TTQSVPLESTTQQKGKVWNIFTLKRPDLPEDITIPSAASPSEPGGTEANIAGVGAEILNV
AEGIRNLVQLWDEKTTKGMERTEAPTTAGSWEASSLPVTDSASPQNTTANMTDDVQTSLQ
TGQPEVALSVTTKSPFLWNKTQVLLKKPETPLPGSASFSFSPDDHSSGDRLAFQESADVG
QEGAATPEARADRGAFPAKQGIVSNTNVLELQDPQANSSMHVGISSKVVGALDNWLSHLV
TDSNQSVSYDNRAHLSLKSHPSFNHSGIVVADANKNHSGDSVPNSNATNFMEFPPANNSE
SLEFLLTYTMQHFSNSSTGLPSFFPGLTPAAGHCLPLPTKLSYCNNLGMKHFRVPNYLHH
GSEEEIWAALHEWEGLLKSRCHRYLEWFFCLLLVPGCNTSFPITPPPCRGFCEAVKDLCW
IHLKEGHLPISCDSLPAEDGVYSCVFINVSAENFSTEVGLLELIGDPPPDQITKVYGPDR
SPGYVFGLDANTGQVARYHLPSPFYRDFSLLFYVQPTSDKAGVLFAITDASQSIIYVGVK
LSEVKDGKQQIIFYYTEPGSQNSYAAATFTVPSLVNQWTRFAISVEDEEVVLYMDCEEYE
RVRFERSPDEMDLEDGSGLFVAQAGGADPDKYQGVIAELKVKGDPQAADVQCEEEGDDSD
IISGDGGSGAEEKPQPPEKEKVTAVLSSLPEPPPVTSPPTAKKPSQPEEKLHSQTELTKL
EERRPFASGADAKGEKGDPGEKGERGPKGDSGVSGALSTNGAKGEKGEKGELGVKGNAGF
GYPGSKGQKGEPGAQGSPGPAGPPGPPGTIVQHPDGSVVEQVAGPSGPVGPPGLPGSDGL
PGKDGEPGDPGEDGKPGDVGPQGFPGTPGEPGLKGEKGDPGVGVRGPPGLPGPPGQPGFN
SKLDKLTFIDMEGSGFGGDLESLRGPRGPPGPPGPPGVPGLPGQPGRFGTNGTDLPGPPG
LPGVPGRDGSSGLPGPPGLPGSPGRDGIPGQPGANGASGEPGELGLPGAPGLKGSKGEAG
LPGAPGETGLAGLPGPIGPRGLPGPPGPPGRGFVAGFDDMEGSGLPFVSAVPGPRGPEGP
QGPPGIPGLKGDAGFAGLPGLPGEKGDPGLPGPDGHPGLEGFPGPQGPKGDRGDSGAKGE
PGQDGVGLPGPPGPPGLPGQVVLPTDGTSLPALPGPEGRQGHAGFPGPAGPKGDEGSPGL
PGLTGLKGEKGEPGVIIGPDGTIIASNPKGERGEPGSRGSVGPAGPPGRHGQKGEIGFPG
RPGRPGMNGLKGEKGDPADSSGGLGSRGPPGFPGPPGPPGPPGSVVFDNNAFSEMGPPGP
PGLPGYDGARGQKGEKGELGPPGLPGQFPFDLSRFDSTFRGERGERGDTGMKGEKGEPGG
GGLFGSSSAGPPGPPGYPGLPGPKGDSVRGPPGPPGAQGPPGSGFDGRPGSPGPPGPPGP
PGPPSFPGPHRQSISIPGPPGPPGPPGPPGVSDASSSSGQLRILPTYQSMMGRAHEVPEG
QLLFIRDREELYVRVRNGFRRVLLEERISLSGPGLDNEVYDRPPNVHYSHGDTASSGSQR
PFQQHLPLHPHREYSAYSTAKPWRGDESIANQHRLPEQPAIHPPHQGAQHQQEPLNAFFL
NNREPEIVPSAVHTHHDFQPALHLVALNAPQSGSMRGIRGADFQCFQQAREVGLTGTFRA
FLSSRLQDLYSIVRRADRSTVPIVNLRDEVLFNNWESLFSGSEAQFRTGVRILSFDGRDV
LRDSAWPQKSVWHGSDAKGRRLTESYCETWRTDDTVVTGQASSLALGKLLEQKNSSCKNA
FIVLCIENSFMTSSKK
NT seq
5631 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaactgtgcccattattggattcctgctgctgctgctgacctgtggcttgtca
aatgcacagggctgggggagttggttttgggggagttcagaagaaacaaccctcccttcc
acagaggctgtcagtagccaagaagagcagacggcacagcagcttgctacatttgaggct
accacgcagagcgtcccccttgaaagcaccacccagcagaaggggaaagtgtggaatata
ttcacccttaagcggccagaccttcctgaggacatcaccatcccttcagctgcatcacct
tctgagccaggaggcactgaggcaaatattgcaggggtgggggctgagatcctgaatgta
gctgaaggaatcaggaatttggttcagctgtgggatgaaaagacaaccaaagggatggag
aggaccgaggcacctacaaccgctggctcttgggaagcatcatctctccctgttacagac
tcagcgagcccccagaacacgactgccaacatgacagatgatgtgcagacctcactgcaa
actgggcagccagaggttgccctctcggttactacaaagtctccttttctgtggaacaag
actcaagtcctcttaaagaagcctgagactccacttccaggtagtgcttctttctcattt
tcaccagatgatcattccagcggcgacaggttggcctttcaagaatctgcagatgtgggg
caagaaggtgctgccaccccagaagcgagggcagaccggggagctttcccagcaaaacaa
ggaattgtttccaacacaaatgttctggaattgcaggatcctcaggctaatagcagcatg
catgttggaatttcctccaaggtggtgggtgctttagacaactggctatcccatttggtt
acagattcaaaccaatcagtctcttatgacaatagagcccatctcagccttaaaagccac
ccctcctttaatcactctgggatagtggtagctgatgccaataagaaccactctggtgat
tctgttcctaattcaaatgccactaattttatggaattcccccccgccaataactctgaa
tctcttgagtttctactaacctacactatgcaacattttagcaatagtagtacagggctt
ccttccttctttcctggattgactccagcagctggccactgcttgccattgccaaccaag
ctgtcatattgcaacaacctgggcatgaagcatttccgagtgccgaattatttgcatcat
ggcagtgaggaggaaatctgggctgctttgcatgagtgggaggggcttcttaaatctcgg
tgtcaccgctacttggagtggtttttctgcttgctactggtacccgggtgtaacacttct
tttccaataacacctccaccatgccggggattttgtgaggccgtgaaagatctatgttgg
attcatttgaaagaggggcatcttccaatctcatgtgactctctcccggcggaggatggt
gtatattcatgtgtgtttattaatgtttcagcagaaaatttcagcacagaagttggtctc
ttagagttgattggggatcccccaccggaccagataaccaaagtatatggcccagacaga
agccctggctatgtgtttggactggatgccaacactgggcaagtggcccgctaccacctc
cctagccctttttacagagacttctcactcctattctatgtgcagcctacatcagacaag
gcaggggtgctttttgccattacggatgcctcccagtcaatcatctacgttggtgtgaag
ctttcagaggtgaaagatgggaagcaacaaatcatcttttactacacagagcctggctct
cagaattcctatgctgctgccacattcacagtgccttccctggtcaatcagtggactcgc
tttgccatcagtgtggaggatgaagaagtggttctctatatggactgtgaggagtatgaa
cgggtccgttttgagcgctcacctgatgagatggatctggaagatggctcggggcttttt
gtggcccaggctggaggggctgatcctgataaataccagggtgtgattgctgaactgaaa
gtgaaaggagatcctcaggccgctgacgtccagtgtgaggaagagggggatgactctgat
ataatatctggagatgggggaagtggagctgaagaaaagccacagccaccagaaaaggaa
aaggtgactgcagtgctctcaagtctcccagagcctccccctgtcacttctcctcccact
gccaaaaagccctcacagccagaagagaaactccattcgcaaactgagctcaccaaactg
gaagagagacggccatttgcttcaggtgctgatgccaaaggtgaaaaaggggatccaggt
gaaaaaggtgaacgaggccctaaaggggattctggagttagtggagctctatcaacaaat
ggtgctaaaggtgaaaagggagaaaaaggagagctgggtgttaagggaaatgcaggtttt
ggatatccaggctctaaaggacagaaaggtgagcctggtgctcaggggtctcctgggcct
gctgggcccccaggccctcctgggaccatcgtgcagcatcccgatggctctgtggtggag
caggttgctgggccctcaggacccgttggcccaccaggactacctgggagtgatggtcta
cctggaaaggatggagagcctggagatcctggtgaagatggcaaaccaggggatgttggc
cctcaaggattccctgggaccccaggtgaacctggcctgaaaggtgaaaagggtgatcca
ggagtaggtgtaagaggcccccctgggctgccaggaccacccgggcaaccaggattcaat
tctaaactagacaagttgacgtttatagatatggaaggttctggctttggaggtgatttg
gaaagcttacggggacccagaggaccacccgggcctccgggccctcctggtgttcccggc
ttgccaggacaacctggaagatttgggacgaatggcacggaccttccaggaccacccggc
ctccctggagtgccaggtagagatggcagctcaggacttccagggcctcctggccttcct
ggttctccaggaagagatgggatccctggtcagcctggggcgaatggagcaagtggagaa
ccaggagaactaggcctcccaggagcacctggacttaagggcagtaaaggagaagcaggg
ttgcccggagcaccaggagaaactggcctggcaggacttcctgggcccataggtcctcga
ggattgcctggtcctccaggtcctcctggtcgaggctttgtggctggctttgatgatatg
gaaggctcagggctgccatttgtttctgctgtccctggaccacgcggaccagaagggcca
cagggtccacctgggattccaggactcaagggagatgctggcttcgcaggtctgccaggt
ttgccaggagagaagggagaccctggattgccaggaccagatgggcaccctggactagaa
ggattcccgggaccacaggggccaaagggtgacagaggagactcaggtgctaaaggtgaa
ccaggtcaagatggagttggactgccagggcctcctggcccccctggccttccaggacaa
gtcgtcctgcccactgatggtacaagtttgcctgctttgccgggccctgagggcaggcaa
gggcatgctggtttcccagggccagcaggaccaaaaggtgatgaaggatcccctggtttg
ccaggccttacaggactgaagggtgaaaaaggagagcccggagttataattggccctgat
ggaacaatcatagcatctaacccaaaaggagagaggggtgagccaggctcaagaggatct
gtggggccagcagggccacctgggcggcatgggcagaaaggtgaaatcggctttcctgga
agacctggtcgacctggcatgaatgggttgaagggagaaaaaggtgacccagcagactca
agtggaggactaggctcaaggggtcctccaggcttccctgggcctcctgggcctcctggg
cctccgggcagtgttgtttttgacaataatgcatttagtgagatgggccctcctggacct
cctggattacctggctacgatggtgctcgaggccagaagggagaaaagggcgagttgggt
cctccagggcttccaggccagtttccttttgacctcagcagatttgattccacttttagg
ggagaaaggggtgagagaggtgacactggcatgaaaggtgaaaagggtgagcccggtggc
ggtggattatttggatcaagcagtgctggacctccaggtcccccaggatatcctggtctt
ccgggccccaaaggagacagtgttaggggaccacctggccctccaggagcacaaggacct
cctggttcagggtttgatggacgcccagggtcaccaggcccccctggtcctcctggccct
cctggtcccccttcttttccaggaccccatcgacaatctatcagtattcctggaccacct
gggcccccaggaccaccgggacctccaggtgttagtgatgcatcttcctcttctgggcaa
ctacggatcttgccaacctatcagagcatgatgggcagagctcatgaagtgcctgaaggg
cagctcctcttcatccgggacagagaagagctctacgtccgggttcgcaatggtttcagg
agagttcttcttgaggaaagaatctctctctctggccctggactggataatgaggtgtat
gatcgacctcccaatgtccattactcacatggagacacggcatcctctggatcacagcgt
ccattccagcagcacttaccgctgcatccgcaccgagaatatagtgcctattccactgcc
aagccctggagaggggatgagagcatcgccaaccaacaccgccttcctgagcaacctgcc
atccacccacctcatcagggagcacagcatcagcaagaacccctgaatgccttctttctc
aacaaccgcgagcccgagattgtgccttctgctgttcacacacaccatgacttccagcct
gctctccaccttgtcgccctgaacgctccccagagtggcagcatgcgtggcatccgagga
gctgacttccagtgtttccagcaagccagggaggttggactgacgggcaccttccgggcg
ttcctctcctcccgcctgcaagacctctacagcatcgtgcgcagagcagaccggagcacc
gtgcctatcgtcaatctcagggatgaagtgctgtttaataactgggagtcccttttctca
ggctctgaagcacagtttagaactggggttcgcatcctctccttcgatggaagggatgtc
ctgagagattctgcgtggcctcagaagtctgtatggcatggctctgacgccaagggacgg
cggctaacagagagttactgtgagacatggcggacggatgacactgtggtgacagggcag
gcttcctcgctggcgttgggcaagctgcttgagcagaagaacagtagctgcaaaaatgcc
tttattgtcctatgcattgaaaacagcttcatgacttcttccaaaaaataa
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