Hemicordylus capensis (graceful crag lizard): 128334273
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Entry
128334273 CDS
T08891
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128334273 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hcg03041
]
128334273 (DHX38)
Enzymes [BR:
hcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128334273 (DHX38)
Spliceosome [BR:
hcg03041
]
Complex C
Other components
Step II factors
128334273 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
nSTAND3
PhoH
Flavi_DEAD
SRP54
AAA_30
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
128334273
NCBI-ProteinID:
XP_053126829
LinkDB
All DBs
Position
9:complement(32400444..32413125)
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AA seq
1239 aa
AA seq
DB search
MGDTPEEASLHRLEGMAPETQVGGLIIKKKSAAEEQHVFKIPAPRTSLLGLDLLAAQKRR
EREEKDSSPEDRKRSRVSSYKDWAEGKDDVVGGEEEDGGDTAGCSSRKDRYYRSARVETP
SHTGGVSEEFWERSRQRERERREHGVYASSKEEKDRKKDHGRERDHDRKRDREEGDRSRR
SSRSERDSSSERSSTRKNEPESPRHRPKDAATPSRSSWEEDDSGYSNSRRSQWESPSPTP
SYRDSERSHRGSALRDSDRRDRDRSVRSRYPEETPLPTPSYKYNDWADNQRHSGSQAWLS
RGRGRREDGEGGIAFESEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLASSSEEYVRKR
EQHLQKQKQKRMSAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLLVHN
LVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQKERKKAQHKHWELA
GTKLGNIMGIKKEEEEEGSHPILAEDGTVDYRTEQKFADHMKEKSEASSEFAKKKSIVEQ
RQFLPIFAVQQELLTVIRDNSIVIVVGETGSGKTTQLTQYLHEDSYTDYGMIGCTQPRRV
AAMSVAKRVSEEMGVSLGEEVGYAIRFEDCTSENTVIKYMTDGILLRESLREADLDHYSA
IIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRT
FPVDVLFSKTPQEDYVEAAVKQALQVHLSSAPGDILIFMPGQEDIEVTSEQIVEHLEELE
NAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKL
KVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLSTTVPEIQR
TNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVE
FPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFFRPKGREEESDQVREKFAVPESDH
LTYLNVYLQWKNSSYSTLWCNEHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDV
VRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKE
YMQCVTAVDGEWLAELGPMFYSIKHAGKSRQESRRRAKEEASAMEEEMALAEEQLRARRE
EQARRNPVGSVRSTKIYTPGRKEQGAPATPRHTPARFGL
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgggggacacccctgaagaggcctccctccaccgcctggagggaatggctccagagacg
caggttgggggcttgatcatcaagaagaagagcgctgctgaggaacagcacgtcttcaag
atccctgcgccccgcacctccctgctgggccttgacctcctagctgcacagaaacgccgg
gagcgggaggagaaggacagcagcccagaggaccggaagaggtcccgggtctcttcgtac
aaggactgggcggagggtaaagatgacgtggtggggggcgaagaagaggatggtggcgac
acagcaggatgcagcagccgcaaagacaggtactaccgctctgcccgggtggaaacaccg
tctcacactggaggggtcagtgaggagttctgggagcgcagccggcagcgggagcgggaa
cgccgtgagcacggggtctacgcctcttccaaggaggagaaagatcgcaagaaggaccac
ggtcgggaacgggaccacgatcgcaaacgagaccgagaagagggagatcggagtcgtcgc
agcagccggtcagagagggacagctcctcagagaggtccagcacccggaagaacgagcca
gagagccctcggcaccgccccaaagatgcagcgacgccatcccgctcaagctgggaagag
gacgacagtggctacagcaattcgcgccgctctcagtgggaatctccctcccccacaccc
tcctatcgggactctgagcgaagtcaccgcggttcggctctccgcgacagcgatcggcgt
gatcgtgaccggtccgtgaggagcagatatccggaggagaccccgctgccgaccccttcg
tacaaatacaatgactgggctgacaatcagaggcactcgggttcacaggcgtggctctcc
aggggcagagggaggcgtgaggatggtgagggcggcattgcctttgagtccgaggaagag
cggcagcagtgggaagacgaccagcggcaagctgaccgggactggtacatgatggacgag
ggctacgatgagttccacaaccctctggcctcctcgtcggaggagtatgtgcggaagcgg
gagcagcacctgcagaagcagaagcagaagcggatgtctgcgcagcgccggcagatcaac
gaggataacgaacgctgggagaccaaccgcatgctgacgagtggcgtggtgcaccggctg
gaggtggacgaggactttgaggaggacaatgccgccaaggtccacctcctggtccacaac
ctggtgccccccttcttggatgggcgcatcgtcttcaccaagcagccagagcctgtcatc
cctgtcaaggacgcaacttcggacctggccatcatcgcccgcaagggcagccagctcgtg
cggaagcaccgcgagcagaaggagcgcaagaaggcccaacataagcactgggagttggcg
ggcaccaaactggggaacatcatgggcatcaagaaggaagaggaggaggagggatcccac
ccaatcttggcggaggacggcactgtggattacaggacggagcagaaatttgctgaccac
atgaaagagaagagtgaagctagcagtgagtttgccaagaagaagtcgatcgtggagcag
aggcagttcttgcccatctttgctgtgcagcaggaactgctgactgtcatcagggacaac
agcattgtgatcgtggtgggggagacgggcagcggcaaaacgacgcagctgacgcagtac
ctgcacgaggacagctacacggactacggcatgattggctgcacgcagccgcgccgggtg
gcagccatgtctgtggccaagcgtgtcagtgaggagatgggcgtgagccttggcgaggag
gtgggctacgccatccgctttgaggactgcacttccgagaatacggtcatcaagtacatg
acggatgggatcctgctgcgcgagtctctgcgcgaagctgacctcgaccactacagcgcg
atcatcatggacgaggcccacgagcgctctctcaacacggacgtgctctttggcctcctg
cgagaggtcgtggcccggcgctcagacctgaagctgatcgtgacctcggccaccatggat
gccgagaagtttgctgccttctttgggaacgtgcccatcttccacattcctggccgcacc
ttccctgtggatgtcctcttcagtaagactccgcaagaggactacgtggaggcggccgtc
aagcaggccctgcaggtgcacctctccagcgccccaggtgacatcctgatcttcatgccc
ggccaggaggacattgaggtcacctcggagcaaatcgtggagcacctggaagagctggag
aatgcccctgccctggctgtgctgcccatctactcccagctgccttcggatttgcaagcc
aagatcttccagaaggccccagacggagtcaggaagtgcattgtggccaccaacatcgca
gagacctccctgacagttgacgggatcatgtttgtgattgactctggctactgcaagttg
aaggtcttcaaccctcggatcggcatggatgccctgcagatctaccccatcagccaggcc
aatgccaaccagcgctcgggccgagctgggaggacagggccaggtcagtgtttcagactg
tacacccagagtgcctacaagaacgagctgctgagcaccacggtcccagagatccagcgc
accaacctggctaatgtggtgctgctgctcaagtcgctgggggtgcaggacctgctgcag
ttccacttcatggatccccctccggaggacaacatgctgaactccatgtaccagctgtgg
atcctgggagccttggacaacacaggtgggctgacctccacggggcgcctgatggtggag
ttccccctcgacccggccctctccaagatgctgatcgtctcctgcgacatgggctgcagc
tccgagatcctcctgattgtttccatgctctccgtcccggccatcttcttccggcccaag
ggccgggaggaggagagtgaccaggtgcgggagaagtttgcggtccccgagagcgaccac
ctgacctacctgaacgtctacctgcagtggaagaacagcagctactccacgctctggtgc
aacgagcacttcatccacgccaaagcgatgcgcaaggtgcgggaagtgcgggcccagctg
aaggacatcatggtgcagcagcgcatgagcctggcctcctgtggcaccgactgggacgtg
gtccgcaagtgtatctgtgctgcctacttccaccaggctgccaaactgaagggcatcggg
gagtatgtcaacatccgcacagggatgccctgccacctccaccccaccagctccctcttt
ggcatgggctacacgcccgactatattgtctaccacgaacttgtcatgaccaccaaggag
tacatgcagtgtgtcacggctgtggacggcgagtggctggccgagctgggccccatgttc
tacagcatcaagcatgctggcaagtcccgccaggaaagccgtcggcgggccaaggaggaa
gcctccgccatggaggaggagatggctctggccgaagagcagctgcgggcacgccgcgag
gagcaagcccgccgcaaccctgtgggcagcgtcaggtccaccaagatctacacgccgggg
cgcaaggagcagggcgcgcctgccactccccgccacacgccggcgcgctttgggctgtga
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integrated database retrieval system
