Hemicordylus capensis (graceful crag lizard): 128335513
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Entry
128335513 CDS
T08891
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04510
Focal adhesion
hcg04512
ECM-receptor interaction
hcg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128335513 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128335513 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128335513 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hcg04147
]
128335513 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
hcg00536
]
128335513 (COL4A5)
Exosome [BR:
hcg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128335513 (COL4A5)
Glycosaminoglycan binding proteins [BR:
hcg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128335513 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128335513
NCBI-ProteinID:
XP_053129917
LinkDB
All DBs
Position
11:complement(6099984..6232847)
Genome browser
AA seq
1695 aa
AA seq
DB search
MKKPRGLLLLLLRRPPAGCLLLLALLLGLRAQQAEAAACHGCVSGSKCDCSGAKGEKGER
GFPGLDGQPGLPGFPGPEGPPGPRGEKGDDGLPGPFGPKGIRGPPGLPGFPGTPGLPGLP
GQDGPPGAPGIPGCNGTKGDRGYPGTSGFPGLLGPPGPPGLPGMKGEPGEIISSTLPGQK
GDTGFPGLPGIPGPSGPTGVQGPLGPPGPPGLTGPPGQPGLPGPKGNMGLNFQGPKGEKG
EQGLQGPPGPPGQIGEQKSTNDAVFQKGDQGVPGDRGPLGPPGPPGPPGPPGGGKGEKGE
QGEPGKRGKPGKDGDPGQPGLAGLPGDRGASGFPGRDGEKGQKGEAGPPGPPGRVISRTG
IDSTVGAKGSKGLPGFPGEKGDRGYPGLQGPPGLPGPAGIPSVGPPGAPGLPGERGQKGD
QGVPGISIPGQRGLDGRPGSPGLPGPPGPPGTTIPDTGRLCERGPPGLPGLPGEQGFMGE
RGQKGDKGDTCFNCIGTGIPGPPGEKGLPGLPGSPGSPGFPGLKGDRGIPGLAGPAGTPG
LPGPQGPPGRPGTKGDPGDILAFPGLKGEKGEPGFPGPPGLPGLDGSRGQDGPPGLPGSK
GEPAGIAFKGERGPAGDPGLPGIPGERGPMGPPGFGPQGPPGEKGSQGVSGRPGAPGVPG
PKGDPGQTITESGQPGIPGPPGRDGEVGFPGDPGQPGQPGLPGIPGAKGDPGISGIGLPG
PPGPKGFPGLPGLPGAPGTPGRAGLDGSPGSPGAPGQKGDRGFGVPGLAGPPGPPGFKGL
QGPQGDPGFPGNPGSPGREGFDGIPGPKGDPGLRGPPGLVGPRGVPGIGGQGPPGPTGAP
GPVGPPGSQGLAGEKGDPGPPGFDIPGPPGDRGSPGLPGSPGFSGPPGSPGLPGRDGSPG
FSGAKGEMGVMGAPGPQGAPGIPGRSGLPGPKGNDGFPGQSGPPGPAGQKGNKGEAGLPG
LPGTVDPEQLGSKGEKGEPGTPGIPGITGQKGYQGLPGDVGSPGPTGQPGSPGLPGPKGD
AGLAGPPGPTGPPGQKGSSGEMGLPGPPGVEGLQGIGGHPGQPGSPGIPGPKGEKGDPGL
SDIGIPGPPGPKGDAGLPGYPGGPGIKGSPGTSGLPGLPGNSGAKGEPGLPGFPGPPGIS
GPKGLDGPPGMPGVPGSPGPQGDVGRPGSPGLPGEKGQPGRDGIPGPSGQKGEPGQPGFG
RPGPPGLPGLSGQKGDSGLLGPPGPPGSPGLKGETGVQGFPGLQGPPGPPGLPGAPSEGP
KGSPGPPGIPGRPGLPGPEGARGPPGTGGVKGEKGNPGLPGQPGLPGLKGDQGLSGRPGE
SGRPGLNGMKGDPGVPGVPGFPGMKGPTGPPGPAGLGGDLGPPGSPGPPGIPGPAGQTIV
VKGDPGPPGPPGQPGFKGQPGLPGPPGLLGPIGLPGNSGQDGLPGFSGPDGRKGERGLPG
QPGFRGSQGPPGPDGLQGPPGPPGTASVAHGFLITRHSQTTDTPLCPRGTIQIYDGFSLL
YVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSME
PLTGKSIQPFISRCTVCEAPAMVIAVHSQTIQIPSCPQGWESLWIGYSFMMHTSAGAEGS
GQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEVAEMFSKPQSETLKAGD
LRTRISRCQVCMKRT
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagccgcgggggctgctgctgctgctgctgcgccgcccgcctgcaggctgcctg
ctgctgctggcgctgctcctgggactccgtgctcagcaggcagaagccgcggcttgccat
ggttgtgtatcaggatccaagtgtgactgcagtggagcaaaaggagaaaagggtgagaga
gggtttccgggtttagacggtcaaccaggtttacctgggtttcctggaccagaaggacca
cctgggccaagaggcgagaaaggagatgatggacttccaggaccatttggacccaaagga
atcagaggacctccaggtctgccaggatttccaggaacaccaggacttcctgggttgcca
ggccaggatgggccccccggagctcctggtatcccaggatgcaatggaacgaagggagac
cgtggctaccctggtacttcaggttttccaggtttactggggccccctggtcctcccggt
ctgccaggcatgaagggtgagccaggtgaaataatttcatctacattgccaggacaaaaa
ggtgatactggatttccaggtttaccaggaataccaggcccctcgggtcccactggagtg
caaggtcctcttggcccccctgggccaccaggtttgacgggtcctcctggccagccagga
ttgccaggccctaagggcaacatgggcttgaacttccaagggcccaaaggagaaaagggt
gagcagggacttcaaggaccccctgggccaccaggacaaatcggagaacagaaaagtaca
aatgatgcagtgtttcaaaaaggagatcagggtgttccaggtgaccgaggccccttgggt
ccccctgggccaccaggtcctcctggccctccaggtggcgggaaaggtgaaaaaggtgag
caaggagaaccaggcaaaagagggaaacctggcaaggacggagaccccggccagcccggt
ttggctggtttgcctggtgaccgcggtgcatccggctttcccggaagagatggagaaaaa
ggtcagaaaggtgaagcgggtccccctggtcctcccggacgcgtgatttccaggacaggg
attgattcaacagtgggagcaaaaggaagcaaaggcttaccagggtttcctggagagaaa
ggtgatcgtggctatcctggcctacagggaccccctgggttgcctggtcccgctggaatt
ccaagcgtaggcccacctggtgctcctggcctacctggggaaagaggacagaagggcgat
caaggggtacctgggatttccataccggggcaacgtggacttgatggacggcctggatcc
cctggcctgcccggcccgcctggtccacctgggacaactataccagacactggaaggctg
tgtgagcgaggaccccctggcctcccgggcctcccaggagagcaaggatttatgggggag
agaggccagaaaggtgataaaggagacacgtgttttaactgcataggaactggcattcct
ggccctccgggggagaagggtctaccagggttacctggaagcccagggtctcctggtttt
cctgggctaaaaggtgacagaggcatccctggcctcgcgggtcccgctgggacaccaggt
cttcctggccctcaagggccccccgggcgtcctggtacaaaaggggacccgggtgacatc
cttgccttcccaggactgaaaggcgaaaagggggagcctgggtttcccggccctccaggc
ctgccaggattggatggttctcgtggacaagatggacccccaggcctccctgggtccaaa
ggagaacccgcaggcattgctttcaaaggggaaagggggcctgctggtgatccggggttg
cctggaatccccggggaacgagggcctatgggtcctcctggatttggcccacaaggtccc
ccaggcgagaaaggcagtcaaggtgtttcgggtcgtccaggagcccctggagttccagga
cccaaaggtgatcctggccaaactattactgaatccggacagccaggtatccctggtccc
cccggccgagatggcgaagtggggtttccaggtgatcctggtcagccagggcaaccggga
ttgccaggaattccaggtgcaaaaggtgacccaggaatctcaggcattggacttcctggc
ccaccggggccaaaaggtttccccgggcttccgggtctccctggagcgccaggcacacct
ggaagagcgggcctcgacggatcacctggctctcctggagcaccaggacagaagggagat
cgtggatttggagtgccaggactagctggaccacctgggccgccaggttttaaaggttta
cagggcccccaaggtgatcctggcttcccaggaaaccctggttctcctggacgggaaggc
tttgacggaataccaggccctaaaggtgaccctggactacgtggtccacctgggttagta
ggacctcgaggggtgccaggaattggtggtcaaggcccacccggtccaacgggggcccca
ggacctgtgggtccaccaggatcccaaggcttagcaggtgagaagggagatcctggccca
ccagggttcgacattcctggccctccaggtgacagaggcagcccaggattacctggatca
cccggattctcagggcctccgggatcaccaggactacccggaagagatggatctccagga
ttctcaggtgctaaaggagagatgggtgtaatgggtgcaccaggtcctcaaggtgctcct
ggaattcctggcagaagtggccttcctggccccaaaggcaacgacggctttccaggccag
tcgggcccgccaggaccagccgggcaaaaaggaaacaaaggagaagcaggtctgcctgga
ctcccggggacagtggatccggaacaactcggctccaaaggagaaaagggagaaccagga
actccaggcattcctggcataacaggccagaagggttaccaaggtctccctggtgacgtg
ggatctcctggaccaactggacagccaggttcacccggattgccaggccccaagggcgat
gctgggttggctggaccacctgggccaacgggaccccccggacagaaaggttccagtggc
gaaatgggactcccaggtcccccaggtgtcgaaggtctgcaaggcataggaggacatcct
gggcagcctggatctcctggaattcctggaccgaagggggagaaaggtgatccaggcctt
tcggacattggtattccaggcccccctggccctaagggtgatgctggtttgcctggatac
ccagggggtcctggtattaaaggttctcctggcacttctgggttgcctggtttgcctgga
aattcaggtgcgaaaggcgaacctggcctccctggattcccaggtccaccgggtatttca
ggaccaaaaggtcttgatggacctccagggatgcctggtgtcccaggatcacctggacct
caaggtgatgttgggcgccccggatctccaggccttccgggggaaaaagggcagcccggc
cgggacggcatacctgggccatctgggcaaaagggggaaccaggtcaaccaggctttggg
cgccccggacctccaggactgccaggactatcaggtcaaaagggtgactcaggcttgctt
ggacccccggggcctccaggatcccctggtctgaaaggggagacaggtgtccaggggttt
cctggccttcaaggtccaccaggccctccaggactgcctggggcaccttcagaaggtcct
aaaggtagcccagggccgccaggaataccagggagaccaggtctgcctggtccggaaggc
gcccgaggacctcctggaactggaggagttaaaggagagaaaggaaatcctggcttgcca
ggtcagcctggactgcccggtttaaaaggagatcaaggattatctggacgcccgggggag
tccggccgtccaggtctgaatggaatgaaaggtgatcccggcgtcccaggcgtcccagga
ttcccaggtatgaaaggccccactgggcctccaggaccagctggccttggaggggatctt
ggaccacctggctctccaggtcctccagggatacctggcccagctggacaaaccattgta
gtgaaaggtgacccgggtcccccggggcctccgggacagcctggatttaaaggtcagcct
ggactgccaggcccaccaggattgctgggtccaattggccttcctggtaactctgggcaa
gatgggcttcctggatttagtgggccagatggccgtaaaggggagagaggacttccaggt
caaccaggttttcgagggtcacagggccctccaggtccagacggcttgcaaggaccgcct
ggtcctccaggaactgcttcagtcgcccacggatttcttataactcgccacagccaaacg
acagacactccgctgtgcccacgaggaacaatccagatctacgatgggttttctctcctc
tacgtgcaagggaatgagagagcccatgggcaggacttgggtaccgctggtagctgcctt
cgccgcttcagtaccatgcccttcatgttctgcaacatcaacaacgtctgtaactttgca
tctagaaatgactattcctattggctctccactcccgagccgatgcccatgagcatggag
ccattaaccgggaagagcatccagccttttattagtcgctgcacagtctgtgaagctcct
gccatggttatagcagtacacagccagaccattcaaattccatcatgtccacaaggctgg
gaatcactatggattggttattctttcatgatgcacacaagtgccggcgcagaaggatct
ggacaggctctggcctcccccggttcctgcttggaggaattccgctcggctcccttcatt
gagtgtcacggtcgtgggacctgcaattattatgccaattcatacagtttctggctggca
acagtggaggtggcagaaatgttcagtaaacctcagtcagagaccttgaaggctggagac
ctgaggacgcggattagtcgatgccaagtctgtatgaagaggacgtaa
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