Hemicordylus capensis (graceful crag lizard): 128335513
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Entry
128335513 CDS
T08891
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04382
Cornified envelope formation
hcg04510
Focal adhesion
hcg04512
ECM-receptor interaction
hcg04518
Integrin signaling
hcg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128335513 (COL4A5)
04518 Integrin signaling
128335513 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128335513 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128335513 (COL4A5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128335513 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hcg04147
]
128335513 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
hcg00536
]
128335513 (COL4A5)
Exosome [BR:
hcg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128335513 (COL4A5)
Glycosaminoglycan binding proteins [BR:
hcg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128335513 (COL4A5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128335513
NCBI-ProteinID:
XP_053129917
LinkDB
All DBs
Position
11:complement(6099984..6232847)
Genome browser
AA seq
1695 aa
AA seq
DB search
MKKPRGLLLLLLRRPPAGCLLLLALLLGLRAQQAEAAACHGCVSGSKCDCSGAKGEKGER
GFPGLDGQPGLPGFPGPEGPPGPRGEKGDDGLPGPFGPKGIRGPPGLPGFPGTPGLPGLP
GQDGPPGAPGIPGCNGTKGDRGYPGTSGFPGLLGPPGPPGLPGMKGEPGEIISSTLPGQK
GDTGFPGLPGIPGPSGPTGVQGPLGPPGPPGLTGPPGQPGLPGPKGNMGLNFQGPKGEKG
EQGLQGPPGPPGQIGEQKSTNDAVFQKGDQGVPGDRGPLGPPGPPGPPGPPGGGKGEKGE
QGEPGKRGKPGKDGDPGQPGLAGLPGDRGASGFPGRDGEKGQKGEAGPPGPPGRVISRTG
IDSTVGAKGSKGLPGFPGEKGDRGYPGLQGPPGLPGPAGIPSVGPPGAPGLPGERGQKGD
QGVPGISIPGQRGLDGRPGSPGLPGPPGPPGTTIPDTGRLCERGPPGLPGLPGEQGFMGE
RGQKGDKGDTCFNCIGTGIPGPPGEKGLPGLPGSPGSPGFPGLKGDRGIPGLAGPAGTPG
LPGPQGPPGRPGTKGDPGDILAFPGLKGEKGEPGFPGPPGLPGLDGSRGQDGPPGLPGSK
GEPAGIAFKGERGPAGDPGLPGIPGERGPMGPPGFGPQGPPGEKGSQGVSGRPGAPGVPG
PKGDPGQTITESGQPGIPGPPGRDGEVGFPGDPGQPGQPGLPGIPGAKGDPGISGIGLPG
PPGPKGFPGLPGLPGAPGTPGRAGLDGSPGSPGAPGQKGDRGFGVPGLAGPPGPPGFKGL
QGPQGDPGFPGNPGSPGREGFDGIPGPKGDPGLRGPPGLVGPRGVPGIGGQGPPGPTGAP
GPVGPPGSQGLAGEKGDPGPPGFDIPGPPGDRGSPGLPGSPGFSGPPGSPGLPGRDGSPG
FSGAKGEMGVMGAPGPQGAPGIPGRSGLPGPKGNDGFPGQSGPPGPAGQKGNKGEAGLPG
LPGTVDPEQLGSKGEKGEPGTPGIPGITGQKGYQGLPGDVGSPGPTGQPGSPGLPGPKGD
AGLAGPPGPTGPPGQKGSSGEMGLPGPPGVEGLQGIGGHPGQPGSPGIPGPKGEKGDPGL
SDIGIPGPPGPKGDAGLPGYPGGPGIKGSPGTSGLPGLPGNSGAKGEPGLPGFPGPPGIS
GPKGLDGPPGMPGVPGSPGPQGDVGRPGSPGLPGEKGQPGRDGIPGPSGQKGEPGQPGFG
RPGPPGLPGLSGQKGDSGLLGPPGPPGSPGLKGETGVQGFPGLQGPPGPPGLPGAPSEGP
KGSPGPPGIPGRPGLPGPEGARGPPGTGGVKGEKGNPGLPGQPGLPGLKGDQGLSGRPGE
SGRPGLNGMKGDPGVPGVPGFPGMKGPTGPPGPAGLGGDLGPPGSPGPPGIPGPAGQTIV
VKGDPGPPGPPGQPGFKGQPGLPGPPGLLGPIGLPGNSGQDGLPGFSGPDGRKGERGLPG
QPGFRGSQGPPGPDGLQGPPGPPGTASVAHGFLITRHSQTTDTPLCPRGTIQIYDGFSLL
YVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSME
PLTGKSIQPFISRCTVCEAPAMVIAVHSQTIQIPSCPQGWESLWIGYSFMMHTSAGAEGS
GQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEVAEMFSKPQSETLKAGD
LRTRISRCQVCMKRT
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagccgcgggggctgctgctgctgctgctgcgccgcccgcctgcaggctgcctg
ctgctgctggcgctgctcctgggactccgtgctcagcaggcagaagccgcggcttgccat
ggttgtgtatcaggatccaagtgtgactgcagtggagcaaaaggagaaaagggtgagaga
gggtttccgggtttagacggtcaaccaggtttacctgggtttcctggaccagaaggacca
cctgggccaagaggcgagaaaggagatgatggacttccaggaccatttggacccaaagga
atcagaggacctccaggtctgccaggatttccaggaacaccaggacttcctgggttgcca
ggccaggatgggccccccggagctcctggtatcccaggatgcaatggaacgaagggagac
cgtggctaccctggtacttcaggttttccaggtttactggggccccctggtcctcccggt
ctgccaggcatgaagggtgagccaggtgaaataatttcatctacattgccaggacaaaaa
ggtgatactggatttccaggtttaccaggaataccaggcccctcgggtcccactggagtg
caaggtcctcttggcccccctgggccaccaggtttgacgggtcctcctggccagccagga
ttgccaggccctaagggcaacatgggcttgaacttccaagggcccaaaggagaaaagggt
gagcagggacttcaaggaccccctgggccaccaggacaaatcggagaacagaaaagtaca
aatgatgcagtgtttcaaaaaggagatcagggtgttccaggtgaccgaggccccttgggt
ccccctgggccaccaggtcctcctggccctccaggtggcgggaaaggtgaaaaaggtgag
caaggagaaccaggcaaaagagggaaacctggcaaggacggagaccccggccagcccggt
ttggctggtttgcctggtgaccgcggtgcatccggctttcccggaagagatggagaaaaa
ggtcagaaaggtgaagcgggtccccctggtcctcccggacgcgtgatttccaggacaggg
attgattcaacagtgggagcaaaaggaagcaaaggcttaccagggtttcctggagagaaa
ggtgatcgtggctatcctggcctacagggaccccctgggttgcctggtcccgctggaatt
ccaagcgtaggcccacctggtgctcctggcctacctggggaaagaggacagaagggcgat
caaggggtacctgggatttccataccggggcaacgtggacttgatggacggcctggatcc
cctggcctgcccggcccgcctggtccacctgggacaactataccagacactggaaggctg
tgtgagcgaggaccccctggcctcccgggcctcccaggagagcaaggatttatgggggag
agaggccagaaaggtgataaaggagacacgtgttttaactgcataggaactggcattcct
ggccctccgggggagaagggtctaccagggttacctggaagcccagggtctcctggtttt
cctgggctaaaaggtgacagaggcatccctggcctcgcgggtcccgctgggacaccaggt
cttcctggccctcaagggccccccgggcgtcctggtacaaaaggggacccgggtgacatc
cttgccttcccaggactgaaaggcgaaaagggggagcctgggtttcccggccctccaggc
ctgccaggattggatggttctcgtggacaagatggacccccaggcctccctgggtccaaa
ggagaacccgcaggcattgctttcaaaggggaaagggggcctgctggtgatccggggttg
cctggaatccccggggaacgagggcctatgggtcctcctggatttggcccacaaggtccc
ccaggcgagaaaggcagtcaaggtgtttcgggtcgtccaggagcccctggagttccagga
cccaaaggtgatcctggccaaactattactgaatccggacagccaggtatccctggtccc
cccggccgagatggcgaagtggggtttccaggtgatcctggtcagccagggcaaccggga
ttgccaggaattccaggtgcaaaaggtgacccaggaatctcaggcattggacttcctggc
ccaccggggccaaaaggtttccccgggcttccgggtctccctggagcgccaggcacacct
ggaagagcgggcctcgacggatcacctggctctcctggagcaccaggacagaagggagat
cgtggatttggagtgccaggactagctggaccacctgggccgccaggttttaaaggttta
cagggcccccaaggtgatcctggcttcccaggaaaccctggttctcctggacgggaaggc
tttgacggaataccaggccctaaaggtgaccctggactacgtggtccacctgggttagta
ggacctcgaggggtgccaggaattggtggtcaaggcccacccggtccaacgggggcccca
ggacctgtgggtccaccaggatcccaaggcttagcaggtgagaagggagatcctggccca
ccagggttcgacattcctggccctccaggtgacagaggcagcccaggattacctggatca
cccggattctcagggcctccgggatcaccaggactacccggaagagatggatctccagga
ttctcaggtgctaaaggagagatgggtgtaatgggtgcaccaggtcctcaaggtgctcct
ggaattcctggcagaagtggccttcctggccccaaaggcaacgacggctttccaggccag
tcgggcccgccaggaccagccgggcaaaaaggaaacaaaggagaagcaggtctgcctgga
ctcccggggacagtggatccggaacaactcggctccaaaggagaaaagggagaaccagga
actccaggcattcctggcataacaggccagaagggttaccaaggtctccctggtgacgtg
ggatctcctggaccaactggacagccaggttcacccggattgccaggccccaagggcgat
gctgggttggctggaccacctgggccaacgggaccccccggacagaaaggttccagtggc
gaaatgggactcccaggtcccccaggtgtcgaaggtctgcaaggcataggaggacatcct
gggcagcctggatctcctggaattcctggaccgaagggggagaaaggtgatccaggcctt
tcggacattggtattccaggcccccctggccctaagggtgatgctggtttgcctggatac
ccagggggtcctggtattaaaggttctcctggcacttctgggttgcctggtttgcctgga
aattcaggtgcgaaaggcgaacctggcctccctggattcccaggtccaccgggtatttca
ggaccaaaaggtcttgatggacctccagggatgcctggtgtcccaggatcacctggacct
caaggtgatgttgggcgccccggatctccaggccttccgggggaaaaagggcagcccggc
cgggacggcatacctgggccatctgggcaaaagggggaaccaggtcaaccaggctttggg
cgccccggacctccaggactgccaggactatcaggtcaaaagggtgactcaggcttgctt
ggacccccggggcctccaggatcccctggtctgaaaggggagacaggtgtccaggggttt
cctggccttcaaggtccaccaggccctccaggactgcctggggcaccttcagaaggtcct
aaaggtagcccagggccgccaggaataccagggagaccaggtctgcctggtccggaaggc
gcccgaggacctcctggaactggaggagttaaaggagagaaaggaaatcctggcttgcca
ggtcagcctggactgcccggtttaaaaggagatcaaggattatctggacgcccgggggag
tccggccgtccaggtctgaatggaatgaaaggtgatcccggcgtcccaggcgtcccagga
ttcccaggtatgaaaggccccactgggcctccaggaccagctggccttggaggggatctt
ggaccacctggctctccaggtcctccagggatacctggcccagctggacaaaccattgta
gtgaaaggtgacccgggtcccccggggcctccgggacagcctggatttaaaggtcagcct
ggactgccaggcccaccaggattgctgggtccaattggccttcctggtaactctgggcaa
gatgggcttcctggatttagtgggccagatggccgtaaaggggagagaggacttccaggt
caaccaggttttcgagggtcacagggccctccaggtccagacggcttgcaaggaccgcct
ggtcctccaggaactgcttcagtcgcccacggatttcttataactcgccacagccaaacg
acagacactccgctgtgcccacgaggaacaatccagatctacgatgggttttctctcctc
tacgtgcaagggaatgagagagcccatgggcaggacttgggtaccgctggtagctgcctt
cgccgcttcagtaccatgcccttcatgttctgcaacatcaacaacgtctgtaactttgca
tctagaaatgactattcctattggctctccactcccgagccgatgcccatgagcatggag
ccattaaccgggaagagcatccagccttttattagtcgctgcacagtctgtgaagctcct
gccatggttatagcagtacacagccagaccattcaaattccatcatgtccacaaggctgg
gaatcactatggattggttattctttcatgatgcacacaagtgccggcgcagaaggatct
ggacaggctctggcctcccccggttcctgcttggaggaattccgctcggctcccttcatt
gagtgtcacggtcgtgggacctgcaattattatgccaattcatacagtttctggctggca
acagtggaggtggcagaaatgttcagtaaacctcagtcagagaccttgaaggctggagac
ctgaggacgcggattagtcgatgccaagtctgtatgaagaggacgtaa
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