Hemicordylus capensis (graceful crag lizard): 128335875
Help
Entry
128335875 CDS
T08891
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
128335875 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcg03400
]
128335875 (LIG3)
Enzymes [BR:
hcg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128335875 (LIG3)
DNA repair and recombination proteins [BR:
hcg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
128335875 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
zf-PARP
mRNA_cap_enzyme
TMP_4
RNase_Y_N
Motif
Other DBs
NCBI-GeneID:
128335875
NCBI-ProteinID:
XP_053130642
LinkDB
All DBs
Position
12:2407098..2468730
Genome browser
AA seq
661 aa
AA seq
DB search
MSCPVLKRRGVDLKTNEGTCMPLLPKGLLQTSRTLSRSQKLFLLPIQLPRVCSGLLRLPA
PSAFPRTSWPWGAGPLPWAGQQYQPRVCSSALPVPLRIRCARTLCTASEMAEQRYCVDYA
KRSTAGCKKCKEKILKGMVRIGKVVPNPFTESSRDMKEWYHVKCMFEKLEKARATTKKIE
DLTDLEGWEELQEAEKELINQQISDLTSKAASTPKKKAVVQAKITPSGQITSPKKVLSAA
SDPSPKKFSGFTAKPGSAEESSPSSSHKPSLSAEKCDPKHKDCLLREFRKLCAMVADKSS
YNVKTQIIQDFWQKGTSGDGFHGDLYLMVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCSQ
EDMVRDMEQGDVSETVQLFFEKSKACPPATKSLLTIQEVDEFLTRLSKLSKEDYQQNLLQ
EVANRCTANDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNLHDVVERVLLNQ
QELQKVPGMKRTLSVQATLMTPIQPMLAEACKSIDYAMKKCPNGMYSEIKYDGERVQVHK
KGDHFSYFSHSLKPVLPHKVAHFKDFIPKAFPGGHSMILDAEVLLIDTKTGKPLPFGTLG
VHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLRERRKFLHDNMAEIPNRILFSEMKHVTK
M
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgagctgtccagtgctgaagaggagaggagttgacctgaagacaaatgaaggaacctgc
atgcctctccttcccaagggactcctacagacttccaggaccctcagtagaagtcagaag
ctgttcctgttgcccatacagctccctcgagtgtgttctggccttctccgtctccccgcg
cccagcgccttccccagaacctcctggccgtggggagcaggtcctctgccttgggcgggc
cagcagtaccagccccgtgtctgcagctctgccctcccggtgcctctgcgcattcggtgt
gccaggaccctgtgcacagcctccgagatggcagagcagcgctactgcgtggattacgcc
aagcgcagcacggccggctgcaagaagtgcaaggagaagatcctgaaggggatggtgcgg
atcgggaaggtggtgcccaacccgttcacggagtccagcagggacatgaaggagtggtac
cacgtcaagtgcatgtttgagaagctggagaaggcccgggccacaaccaagaagatcgag
gacctcacggacttggagggctgggaggagctgcaggaggctgagaaggagctgatcaac
cagcagatctcagacctaacttccaaagctgcgagcacgcccaagaagaaggccgtcgtc
caggcgaagatcactcccagcggacagatcacctcccccaagaaagttctgtccgctgct
tccgacccctcacccaagaaattctcaggatttacagccaagcccgggagtgccgaggaa
tccagcccgagctcttcccacaagccgagcttgtctgctgagaagtgcgaccccaaacat
aaggactgtctgctgcgggagttcaggaaactctgtgccatggtggccgataagtccagc
tacaacgtgaagacccagatcatccaggacttttggcagaaagggaccagtggagatggc
ttccacggagacctctacctgatggtgaagctgctcttgccaggggtaatcaaaagcgtc
tacaacctgaacgacaagcagattgtcaaactcttcagcaggatttttaactgcagccag
gaggacatggttcgggacatggaacagggggacgtttcggaaacggtgcagctcttcttt
gagaagagcaaagcctgccctcccgccaccaagagcctcttgacgatccaggaggtggac
gagttcctaacgcgactctccaagctctccaaagaggattaccagcagaacttgctccag
gaagtggcgaacaggtgcacagccaacgacctgaaatgcatcatcaggttgatcaagcac
gacttgaagatgaatgcgggtgcaaagcacgtcctcgatgccctggaccccaatgcttat
gaggccttcaaagcttcccgcaacctccacgacgtggtggagcgggtcttgctgaaccaa
caggagttgcagaaggttcccggcatgaaaaggacactcagcgtgcaggcgacactgatg
acccccatccagcccatgctggccgaagcctgcaagtccattgactatgctatgaagaag
tgtcccaacgggatgtactcggagatcaaatacgacggggagcgagttcaggtgcacaag
aagggtgaccacttcagctacttcagccacagcctgaagcccgtccttccgcacaaggtg
gcccattttaaggacttcatccccaaggccttccccggtggacacagcatgattctggac
gccgaagtccttctgatcgacaccaagacggggaagccattgccttttgggactcttggg
gtgcataagaaagctgctttccaggacgccaacgtctgtctcttcgtcttcgactgcatc
tacttcaatgacgtcagcctgatggacaggcctctgcgggagcgtcggaaatttctccac
gacaacatggcggaaatcccgaaccggatcctcttctcggagatgaagcacgtcacgaaa
atgtga
DBGET
integrated database retrieval system
