Hemicordylus capensis (graceful crag lizard): 128335945
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Entry
128335945 CDS
T08891
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128335945 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hcg03041
]
128335945 (PRPF8)
Spliceosome [BR:
hcg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128335945 (PRPF8)
Complex C
U5 SnRNP specific factors
128335945 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
128335945
NCBI-ProteinID:
XP_053130876
LinkDB
All DBs
Position
12:complement(13336858..13368435)
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPFRGPCPPMPAPMAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMAENPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtgtgttccctttccgggggccctgccccccgatgcctgcgcccatggcccca
ctgccggactatatgtccgaagaaaagctgcaggagaaagcccgcaagtggcagcagctg
caggccaagcgctatgccgagaagaggaagtttggcttcgtggatgcccagaaggaggac
atgccccctgagcacgtgcggaaaatcatccgtgaccacggcgacatgaccaacaggaag
ttccggcacgacaagcgcgtttatttgggggccctgaagtacatgccccacgccgtcctg
aagctgctggagaacatgccgatgccctgggagcagatccgagacgtccccgtcctgtac
cacatcacgggggccatctcctttgtgaacgagatcccgtgggtgatcgagccggtttac
attgctcagtgggggtccatgtggatcatgatgaggcgggaaaagagggaccggcggcat
ttcaagcgcatgcgcttcccgccctttgacgacgaggagccgcccctcgactacgcggac
aacattctggatgtggagcccctagaggccatccagctggagctggacccggaagaagac
gccccggtcctggactggttctacgaccaccagcccctgaaagacaaccgcaagtacgtg
aacggctccacctaccagcgctggcagttcacgctccccatgatgtccacgctgtaccgc
ctggccaaccagctgctgacggacctggtggacgacaactacttctacctgttcgacctg
aaggccttcttcacctccaaggccctcaacatggccatcccggggggccccaagtttgag
cccctggtccgagatattaacctgcaggacgaggactggaacgagttcaacgacatcaac
aagatcatcatccgccagcccatcaggaccgagtacaagatcgccttcccctacctgtac
aacaacctcccccatcacgtccacctcacctggtatcacacgccgaatgtggtcttcatc
aaaacggaggatccggaccttcccgctttctacttcgaccctctcatcaaccccatttcc
cacagacactctgttaagagccaggagcccctccccgacgacgacgaggagttcgagctg
ccggagttcgtggagcccttcctgaaggagacgcccctctacaccgacaacaccgccaac
ggcatcgccctgctctgggcccctcggcccttcaacctgcgctccggccggacccgccgg
gctctggacatccccctggtcaagaactggtaccgggagcattgccccgccgggcagccc
gtcaaagtccgagtctcctaccagaagctgctcaagtattacgtcctgaacgccctcaag
cacaggcccccgaaggcccagaagaagaggtacctcttccgctccttcaaggccaccaag
ttcttccagtccaccaagctggactgggtggaggtggggctgcaggtctgccgccagggc
tacaacatgctgaacctgctgatccaccgcaagaacctcaactatctccacctggactac
aacttcaacctcaagcccgtcaagaccctcaccaccaaggaaaggaagaagtcgcgcttc
gggaacgccttccacctctgccgggaggtgctgcgcctgaccaagctcgtggtggacagc
cacgtccagtacagactggggaatgtggacgccttccagctggcggacggcctgcagtac
atctttgcccacgtcgggcagctgacggggatgtaccgctacaagtacaagctgatgagg
cagatccgcatgtgcaaggacctgaagcacctcatctattaccgcttcaacacggggccg
gtggggaagggccccggctgcggcttctgggccccgggctggcgcgtctggctcttcttc
atgcgaggcatcaccccgctgctggagcgctggctgggcaatctcttggctcggcagttc
gaaggccgtcactcgaagggggtggccaagacggtcaccaagcagcgggtggagtctcac
ttcgacctggagctgcgggcggccgtgatgcacgacatcctggacatgatgcccgagggc
atcaagcagaacaaggcccggaccatcctgcagcacctgagcgaggcctggcggtgctgg
aaagccaacatcccctggaaggtgcccggcttgccgacgcccattgagaacatgatcctg
cggtatgtcaaggccaaagccgactggtggaccaacactgcgcactacaaccgggagcgc
atccgccgcggggccaccgtggacaagaccgtctgcaagaagaacctgggccgcctgacc
cgcctgtacctgaaagccgagcaggagcggcagcacaactacctgaaggacggcccgtac
atcacggccgaggaggcggtggccgtctacaccaccaccgtccactggctggagagccgg
cggttctcgcccatccctttcccgccgctctcctacaagcacgacaccaagctgctgatc
ttggccttggagcggctgaaggaggcctacagcgtgaagtcccgcctgaaccagtctcag
cgagaggagctgggcctcatcgagcaggcctacgacaacccccacgaggccttgtcccgc
atcaagcggcacttgctgacccagcgggccttcaaggaggtgggcattgagttcatggac
ctctacagccacctggtccccgtgtacgacgtggagccgctggagaagatcacggacgcc
tacttggaccagtacctgtggtacgaggcggacaagcggcgcctcttccctccgtggatc
aagcccgccgacacggagccccctcccttgctggtgtacaagtggtgccaaggcatcaac
aacctccaggacgtgtgggagaccagcgagggcgagtgcaacgtcatgctggagtcgcgc
ttcgagaagatgtacgagaagatcgacttgaccctgctcaacaggctgctgcgtctcatc
gtcgaccacaacatcgccgactacatgacggccaagaacaacgtggtcatcaactacaag
gacatgaaccacaccaactcctacgggatcatccgggggctgcagttcgcctccttcatc
gtccagtactacggcctggtgatggacctgctggtcctcggcctgcaccgggccagcgag
atggccggccccccgcagatgcccaacgacttcctcagtttccaggacatcgccacggag
gtggcccaccccatccgcctcttctgcagatacatcgaccgcatccacatcttcttcagg
ttcactgccgacgaggccagggacctgatccagcgctacctcacggagcacccggatccg
aacaacgagaacatcgtgggctacaacaacaagaagtgctggccgcgggacgcccgtatg
cggctcatgaagcacgacgtcaacctcggccgcgccgtcttctgggacatcaagaaccgg
ctgccgcgctcggtcaccacggtccagtgggagaacagctttgtctccgtgtacagcaag
gacaaccccaacctcctcttcaacatgtgcggcttcgagtgccggatcctgcccaagtgc
cgcaccagctacgaggagttcacccacaaggacggcgtgtggaacctgcagaacgaggtg
accaaagaacgcacggctcagtgcttcctgcgcgtggacgacgaatccatgcagcggttc
cacaaccgggtccggcagatcctgatggcctccggctccaccaccttcaccaagatcgtg
aacaagtggaacacggccctgatcggcctgatgacctacttccgcgaggccgtggtcaac
acccaggagctgctggacctgctggtgaagtgcgagaacaagatccagacccgcatcaag
atcgggctgaactccaagatgcccagccgcttcccgcccgtcgtcttctacacgcccaag
gagctgggcgggctgggcatgctctccatgggccacgtcctcatcccccagtcggacctc
aggtggtccaagcagacggacgtgggcatcacccacttccgctccggcatgagccacgaa
gaggaccagctgatccccaacctgtaccgctacatccagccctgggagagcgagttcatt
gactcccagcgggtgtgggccgagtacgcgctcaagaggcaggaggccatcgcgcagaac
aggcgcctgactctggaggacttggaggactcctgggacaggggcatcccccgcatcaat
accctcttccagaaggaccggcacaccctggcctatgacaaaggctggagggtcaggacc
gacttcaagcagtaccaggtcctgaagcagaaccccttctggtggacccaccagcgtcac
gacgggaagctctggaacctgaataactaccgcacggacatgatccaggccctgggaggg
gtggaaggcatcctggagcacaccctcttcaaggggacctacttcccgacctgggagggt
ctcttctgggagaaagccagtggctttgaggagtcgatgaagtggaagaagctgaccaac
gcccagcgctcgggcctcaaccagatccccaaccggcggttcaccctctggtggtccccc
accatcaaccgagccaacgtctacgtgggcttccaggtgcagctggacctgacgggcatc
ttcatgcacggcaagatccccaccctgaagatctccctcatccagatcttccgggcccac
ctgtggcagaagatccacgagagcatcgtgatggacttgtgccaggtgtttgaccaggag
ctagacgccttggagattgagacggtgcagaaggagaccatccacccccggaagtcctac
aagatgaactcctcctgcgcggacatcctcctcttcgcttcctacaagtggaacgtctcg
cggccctcgttgctggccgactccaaggacgtgatggacagcaccaccacccagaagtac
tggatcgacatccagctgcgctggggggattacgactcccacgacatcgagcgctacgcc
cgggccaagttcctggactacaccaccgacaacatgagcatctacccctcgcccaccggc
gtcctcatcgccatcgacctggcctacaacctgcacagtgcttatggcaactggttccca
gggagcaagccgctgatccagcaggccatggccaagatcatgaaggccaacccggccctc
tacgtcctgcgcgagcgtatccgcaagggcctgcagctctactcctcggagcccactgag
ccctacctctcctcgcagaactacggggagctcttctccaaccagatcatctggttcgtg
gacgacaccaacgtgtacagagtcaccatccacaagaccttcgaagggaacttgacgacc
aagcccatcaacggggccatcttcatcttcaacccccgcacgggccagctcttcctgaag
atcatccacacgtcggtgtgggccgggcagaagcgtttgggccagctggccaagtggaag
acggccgaggaagtggcggccctgatccggtccctgccggtggaggagcagccgaagcag
atcatcgtcacccggaagggcatgttggaccctctggaggtgcacttgctggatttcccc
aacattgtgatcaaaggctccgagctgcagctgccctttcaggcctgcctgaaggtggag
aagtttggggacctcatcctgaaggcgaccgagccccagatggttcttttcaacctgtat
gacgactggctgaagaccatttcctcctacacggccttctcgcgtctgatcctcatcctg
cgggccctgcacgtgaacaacgaccgggccaaggtcatcctgaagccggacaagactacc
atcacggagcctcaccacatctggcccaccctgaccgacgaggagtggatcaaggtggag
gtgcagctgaaagacctgatcctggcggactacgggaagaaaaacaacgtgaatgtggct
tccctgacccagtcggagatccgggacatcatcctgggcatggagatctcggccccctcg
cagcagcggcagcagatcgccgagatcgagaagcagaccaaggagcagtcgcagctgacg
gccacccagacccggacggtcaacaagcacggcgacgagatcatcacgtccaccaccagc
aactacgagacgcagaccttctcctccaagacagagtggcgggtcagggccatctcggct
gccaacctccacctgcggacaaaccacatctacgtctcctccgacgacatcaaggagacc
ggctacacctacatcctccccaagaacgtgctgaagaagttcatctgcatttcagacctg
cgcgctcagatcgccggctacctgtacggcgtgagccccccggacaacccccaggtgaag
gagatccgctgcatcgtgatggtgcctcagtgggggactcaccagacggtccacctgccc
ggccagctgccccagcacgagtacctcaaggaaatggagcccctcggctggatccacacc
cagcccaacgaatccccccagctctctccgcaagacgtgacgacccacgccaaagtcatg
gctgaaaacccctcctgggatggggagaagaccatcatcatcacctgcagttttacgcct
ggctcctgtaccttgacggcctacaagctgacccccagcggctacgaatggggcaggcaa
aacacagacaaaggcaacaaccccaagggctacctgccctcccactacgagagggtccag
atgctgctgtctgatcgcttcctgggcttcttcatggtgccggcacagagctcctggaat
tacaacttcatgggcgtccgccacgatcccaacatgaagtacgagctgcagctggccaac
cccaaggagttctaccacgaggtccaccggccctcgcacttcctcaacttcgccctgctg
caggagggcgaggtctattccgccgaccgggaggatctctacgcctag
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