Hemicordylus capensis (graceful crag lizard): 128336370
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Entry
128336370 CDS
T08891
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
hcg01001
]
128336370 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
hcg04054
]
128336370 (CIITA)
Enzymes [BR:
hcg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
128336370 (CIITA)
Protein kinases [BR:
hcg01001
]
Serine/threonine kinases: Other
TAF1 family
128336370 (CIITA)
Pattern recognition receptors [BR:
hcg04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
128336370 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_14
LRR_8
NB-ARC
LRR_9
nSTAND3
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
128336370
NCBI-ProteinID:
XP_053131812
LinkDB
All DBs
Position
13:4283603..4320143
Genome browser
AA seq
1169 aa
AA seq
DB search
MYGMLPNTLQGLRDHLDFVSNPLQTADAARMNLFKEILPRVREILSNASSYQIQMLLSLM
LEEGVISKEYCQTLRQEKDRDDLARKISLNLVEKWATHLNTMPPPHCSQVGGSRMDAAAA
GAKLGGLSDNIMDPGVLAGKSCLDLLDSEDDPWVLYIEEEAKFATGDPPVDTISYDQDNN
PDVFYTVESDESGEEICLCSNTGEAYDKIAALADYVLKDQQENPVENLFGSLVSEEVPAE
CPGGCLETKKRRSCSDPPEPKRRKVAHSPALCVVNASSMAIPLNASLPGAISQSDFHVQF
SVTAIGPAGRSSKAFGPSVSPSSEYFSLGTDNLHVVVTFAPLPQNAHLPIGPDTPNIDIC
SELIDTFREKLKNHFKDVCTLVPMERKVSMDHLYINSDLVQCHAESRSVRNANLRSCDLE
EKEKIRVRRSRLFQTPGKNELGTKVIVVLGKAGMGKSLLAQKTCLDWSKGKLPEYDFVFW
FDCRRLSPLLEKHCSLKQLLLEWSGGPQEEGDEVYRHILQKPDKVLLIFDSLEELKDQEG
FMSCSDNPPSGLRGILAGLFQKKLLSGCTLLLLARPKDRLPQCFPRMDTALEMVGFSTQQ
VELYLNRYFEGSPNCSKAVSLIKDCPFLFSHCYNPEMCRFICEAVFEIEDQELPSTLSSL
LVKYLLQKLTRSAKDEAAANHRDVAAVATVAWSLGQSQQNTLQSCHFPSLEVKEFALQWG
LVVPFASPKCSSHEEEGRYTFSSFIVQHFLVALHLVLAQEIKDKKLTKHLRLLSKPKKLL
SSWDLVPRFLAGLLFLQDNLGSSFLFEEEGEVDTEKMIAKKRKSLLKYIRKLTIRDFSPD
KLLDLFHCIYETQDQYLLQHLALELQPSLSFLSFPLTLPDVHVLHSVLRRSTKEFALDLR
SSIDIEGLRCLVSMKNVTSFRASLGDAVQLWKHLWEAKEGEPLRSAVEKFAVIPFKAKTM
KDVEDLSALVCMQEKMTQGKADSPGSTVHVIPAIAELRRLEFVLGPVCGWKGFQKLVEIL
DVFPALQHLDLDSPEENEIGDQGATALSDVLPRLTSLETLNLSRNKITDQGAEKLAKALP
SLPLLKTLSLYNNNIGDAGAGNIAEMLPRMSSLKVLDMQCNKITPAGAQHLTDSLKKCPR
IQSVALWNPTIPCGVLAHLQQLDSRIRSL
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtatggaatgctccccaataccttgcagggacttcgagaccatctagactttgtctca
aatcctcttcaaacagcagatgctgccaggatgaatcttttcaaggagatcttgccaagg
gttcgagaaatcctatccaatgcctcttcctaccagattcaaatgttgctgagcctcatg
ttggaagaaggtgttatttccaaggaatattgccagaccttgcgccaggaaaaagaccga
gatgatctagcgaggaagatttcactgaatctggtggaaaaatgggccacgcatttgaac
accatgcctcctccccattgttcacaggtcggaggcagccgcatggatgctgctgctgca
ggggccaagcttggaggcttgagtgataacatcatggatccaggggtcttagctgggaag
agctgtctggatctgttggacagcgaggacgatccttgggtcctgtacattgaagaggaa
gctaagtttgccacaggtgacccaccagttgacaccatcagctatgatcaggacaacaac
ccagatgtcttttacacagtggaaagtgacgagagtggagaggagatctgtctgtgttcg
aataccggagaggcttacgataaaattgctgcattggctgattatgtcctgaaagatcag
caggagaatcctgtggagaatcttttcggaagcctggtgtcagaagaggttcctgccgaa
tgcccaggaggttgtctggagacaaagaagcgccgcagctgctcggaccctccagaaccg
aaacgcaggaaagttgcgcactcaccagccttgtgcgtagtgaatgccagctccatggcc
atccctctgaacgcatccctacctggcgccatctctcagtccgacttccatgtgcaattt
tctgtgactgccattggtcctgcaggaagatcttcaaaggcctttgggccttctgtgagt
cctagttcagagtacttctcacttggaacggataacttacatgtggttgtgacctttgca
cctctccctcagaatgctcatttgcctattggaccagacactcccaacattgacatctgc
tcagagttgattgatacttttcgggagaagctgaagaatcatttcaaggacgtgtgcaca
cttgtgcccatggagcgaaaagtatccatggaccatctttacatcaacagcgatctggtg
cagtgtcacgccgaaagcaggagtgtgaggaatgccaatctgagatcctgtgaccttgaa
gagaaggagaaaatcagagtgcggaggagtcggctgttccagacaccaggcaagaacgaa
ctggggaccaaggtcattgtggtgttggggaaggcaggcatggggaagagcctgcttgct
caaaagacctgcctggactggtccaaaggcaagttgcccgaatacgactttgtcttctgg
tttgactgccggaggctgagcccactcctagagaagcactgcagcctgaaacagctgctc
cttgagtggtctggtggacctcaagaggaaggtgatgaagtctaccggcacatcctgcag
aagccagacaaggtcctcctaatttttgacagcttggaagagctgaaggatcaggagggc
ttcatgtcctgttccgacaacccaccctcaggcctccggggcatcttggctgggctcttc
cagaagaagctactcagtggttgcaccttgttactcctggcacgtcccaaagacaggctg
cctcagtgcttccccaggatggacacggccctggaaatggtggggttctccacgcagcaa
gttgagctctaccttaatcgctattttgaaggttccccaaactgcagcaaggcggtgagt
ttaatcaaagactgtcccttcctgttcagccactgttacaatcccgaaatgtgtcggttc
atttgtgaggctgtgtttgaaattgaagaccaagaattaccttccacactttccagcctc
cttgtgaaatacctactccaaaaactgacacgttctgcgaaggacgaagccgccgcaaat
caccgggatgtcgctgctgtagccacggtggcctggtctcttggacaatcccagcagaac
acactccagagttgccacttcccttccttggaagtgaaggaatttgccctgcagtggggg
ctggtggtgcccttcgcatctccaaagtgctcaagccatgaggaagagggtagatacaca
ttttccagtttcatagtccaacacttcttggtcgcgctgcatttggtgcttgcccaagag
attaaggacaaaaaactgaccaaacaccttcggctgctctccaagcccaagaagcttctc
tcttcttgggacttggtccctcgttttttagctggcttgctgttcttgcaagacaatcta
ggctcttccttcctttttgaagaggagggggaggtggacacagagaaaatgattgccaag
aagcggaagagtctcctgaaatacatccggaaactcacgatacgggacttcagcccagac
aagctgcttgacctcttccactgcatctatgaaacacaggaccagtatctcttgcagcat
ttggcattggaactccagccaagcttgtctttcctcagctttcctctcaccctccccgat
gttcatgtcttgcattcagtcttgaggagatccacaaaggagtttgctttggatttgagg
agttccatcgatatagaaggactcagatgtctggtcagcatgaagaacgtgacctcattc
agggcgtctcttggtgatgctgtccagctctggaaacacttgtgggaagccaaggaagga
gagccgctgcggtccgccgtggagaagtttgccgtcattccgttcaaagcaaagaccatg
aaggatgttgaagatctttcggccctcgtatgcatgcaggagaaaatgacccaaggcaag
gcagattcaccaggcagcaccgtccatgtcattccggctatcgcagagcttagacgacta
gagttcgtcttgggacctgtttgtggctggaagggattccaaaagttggtggaaattctt
gacgtgtttccagcacttcagcatttagacttggattctccagaagaaaacgaaatagga
gaccaaggagcaacagccctcagtgatgtcctgccccgcttgacctccctggaaacactg
aacttgtcacggaacaagataacggaccagggggcggagaagctggccaaagcgctgcct
tccctgcctttactgaagacactgagcttgtacaataataacattggggacgctggagca
ggaaatattgcagagatgctccccaggatgtcctcgctgaaggtgttggacatgcagtgc
aacaagatcacgcctgccggagcccagcatctgacagacagcttgaaaaaatgccctcgt
attcagagcgtggcactgtggaaccccacaatcccctgtggagttcttgcacatcttcag
cagctagattctcgaatcagatcgctctag
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