Hemicordylus capensis (graceful crag lizard): 128337018
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Entry
128337018 CDS
T08891
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128337018 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hcg03041
]
128337018 (SF3B1)
03036 Chromosome and associated proteins [BR:
hcg03036
]
128337018 (SF3B1)
Spliceosome [BR:
hcg03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128337018 (SF3B1)
Complex B
128337018 (SF3B1)
Complex C
U2 SnRNP specific factors
128337018 (SF3B1)
Chromosome and associated proteins [BR:
hcg03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128337018 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
128337018
NCBI-ProteinID:
XP_053133457
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All DBs
Position
1:complement(217058647..217096490)
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AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKN
RRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KAVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYRVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYVL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgagaaattcaaggc
aaaaaagctgcccttgatgaagcacaaggagtgggccttgattctactggatactatgat
caggagatctatggtggaagtgatagtagatttgcaggatatgtaacttcaattgcagca
actgaactagaagatgatgatgatgactactcttctaccagcttgcttggccagaagaaa
cctggataccatgcaccagtggcattgcttaatgacataccacagtcaactgaacagtat
gacccatttgctgaacatcgtccacaaaagattgcagatcgggaagatgaatacaaaaat
cgcaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
acacctgatcctaaaatgaatgccagaacatatatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcagcagctggcagaaaaggctaaggctggcgaactt
aaagctgtcaatggtgctgcatcccagccaccatcaaaacgcaaacggcgttgggatcag
actgctgaccagactcctggtgccacaccgaagaaattatctagctgggatcaagctgag
acccctggacatactccgtctctgcgatgggatgaaactcctggtcgtgcaaagggtagt
gagacacctggagcaacccctggatctaaaatatgggatccaactcccagtcatacacca
gcaggagctgcaacacctgggcgtgatacacctggccatgcaacacctggccatggagga
gcaacttccagtgcacggaaaaatagatgggatgagactcccaaaacagaaagagataca
cctggacatgggagtggttgggctgaaactccccgtactgatagaggtggcgattccatt
ggtgagacgccaaccccaggagcaagcaaaagaaaatcacgttgggatgaaacacctgca
agccaaatgggtgggagcactcctgttctaacacctggcaaaacaccaattggtactcca
gctatgaatatggcaactcccacaccaggtcacataatgagtatgactcctgaacagctc
caagcctggcgatgggagagagaaatagatgagagaaacaggcctctttctgatgaagaa
ctggatgctatgtttcctgagggatacagggttctccctcctccagctgggtatgtccct
attcgtactccagctcgaaaacttacggctactcccacaccactgggtggcatgactgga
ttccacatgcaaactgaagataggaccatgaaaagtgtcaatgaccagccctcaggaaat
ctccctttcctcaaaccagatgatatacagtactttgataaattactggttgatgttgat
gaatcaactcttagtccagaggaacagaaagagagaaaaataatgaaattgcttttgaag
attaagaatggcacccctccaatgagaaaggctgctttgcgacagattactgataaagct
cgtgaatttggagcaggccctttgttcaatcagattttacccctgctgatgtcgccaacg
cttgaagatcaagaacgtcatttgcttgtcaaagttattgatagaatcttatacaaattg
gatgacttggtgcggccatacgtgcataagattcttgtggttattgagccactgctgatt
gatgaagactactacgccagagtggaaggcagagaaatcatttccaacttggctaaggca
gctggtctggcaacaatgatctccaccatgcgacccgatattgataacatggatgaatac
gttcgtaatacaacagctcgagcctttgctgttgttgcttctgctctgggcattccttca
ctgttgcccttcttgaaagctgtatgtaagagcaagaagtcctggcaagctagacacact
ggcatcaagattgtgcagcaaattgctattcttatgggctgtgccattttacctcatctc
agaagtttagttgaaattattgagcatggactggtggatgaacagcagaaagtacgtacc
atcagtgctttagctattgctgctttagctgaggcagcaactccatatggtatagaatca
tttgactctgttctaaagcctctgtggaaaggtatacgtcagcacagaggaaagggtctg
gctgcctttttgaaagctattgggtaccttattccacttatggatgctgagtatgccaac
tactataccagagaagtaatgctgatccttatcagagagtttcagtctcctgatgaagaa
atgaaaaagattgtgttgaaggttgtaaagcagtgttgtggcacagatggtgttgaagca
aactacattaaaacagagattctgcctccatttttcaagcacttctggcaacacagaatg
gcattggacagaagaaattacagacaattggttgacacaaccgtggagcttgcaaacaaa
gttggggcagcagaaataatttccaggattgtggatgatctgaaagatgaggcagagcag
tacagaaaaatggtcatggagacaattgagaagatcatggggaatctcggcgcagctgat
attgaccataaactggaagaacaacttattgatggcatcctgtatgccttccaagaacag
accacagaggactctgtgatgttgaatggttttggcacagtggtcaatgctctcggcaag
cgagttaaaccatatttgccccagatctgcggtacagttttgtggcggttgaacaacaaa
tcagccaaagtaagacagcaagctgctgacctgatatctcgtactgcagttgtcatgaag
acttgtcaagaggaaaaattgatgggacacttgggtgtggtcttgtatgagtacctgggt
gaagaatatcctgaggtattgggcagtattctaggagcacttaaagccattgtgaatgtc
ataggcatgcacaaaatgacacctccaattaaagacctgctgccaaggctcacacctatc
ttgaagaacaggcatgaaaaagtgcaggaaaactgtattgacctcgttgggcgtattgca
gacaggggagcagaatacgtttccgcaagggaatggatgaggatctgcttcgaactgcta
gaattgttaaaagctcataagaaagctatccgaagagcaactgtgaacacatttggttat
attgcaaaagctattggaccacatgatgtattggcaacactgctaaataatttgaaagta
caagaaagacaaaacagagtatgtactacagtagcaatagctattgtagctgaaacctgc
tcccctttcacagtactgcctgcacttatgaatgaatacagagtaccggaacttaatgtc
cagaatggtgtattaaaatctctttccttcctgtttgaatatattggagaaatgggaaag
gactacatttatgctgtaactccattgcttgaagatgctttaatggacagggaccttgtt
cacagacaaacagctagtgctgtggtgcagcatatgtctctcggggtgtatggctttggc
tgtgaggactcgctgaaccacttactaaattacgtgtggcccaatgtattcgagacatcg
cctcatgtcatccaagcagttatgggagccttggagggtttgagggtcgcaattggacca
tgcagaatgttgcagtattgtttacagggtttgtttcaccctgccaggaaagtcagagat
gtgtattggaagatctacaactccatctacattggctcccaggatgctttaatagcacat
tatccacgaatctataatgatgaaaagaacacctacatccgttatgaacttgattatgtc
ttgtaa
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