Hemicordylus capensis (graceful crag lizard): 128339081
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Entry
128339081 CDS
T08891
Symbol
TNC
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04510
Focal adhesion
hcg04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128339081 (TNC)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128339081 (TNC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hcg00536
]
128339081 (TNC)
Glycosaminoglycan binding proteins [BR:
hcg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128339081 (TNC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
EGF_Teneurin
Fibrinogen_C
EGF_2
EGF_Tenascin
Fn3_Dep-1_2nd
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
EGF
NDNF
hEGF
Motif
Other DBs
NCBI-GeneID:
128339081
NCBI-ProteinID:
XP_053138578
LinkDB
All DBs
Position
17:complement(5623027..5695725)
Genome browser
AA seq
1868 aa
AA seq
DB search
MGLPTWVWAVAVLSLLHQYVSGGLIKRIIRQKRETGINVTLPEDNQPVVFNHVYNIKVPM
GNLCSVDLDPASRDTDLTSVEPGRDSQEHTPNEENQIVFTHRINIPRRACGCAAAPDIKD
LLSRLEELEGLVSSLRDQCAGGVGCCPTGQTAVGILEAKPYCSGHGNYSNDHCGCICEPG
WKGPNCSEPECPQNCNHRGRCVDGKCVCDEGYTGEACEQQTCPGDCNDQGKCIDGQCVCF
DGFAGEDCSQEVCLVPCGEHGTCVHQQCICEAGFTGADCSEPLCPNNCNNRGRCVEEECV
CDEGYTGEDCGELICPNDCYDRGRCVNGTCYCDPGFTGEDCGEVACPDNCHNQGRCENGL
CVCYEGFMGDDCGERRCPSDCNRRGRCIDGQCVCHEGFLGFDCGEVKCPNDCNSRGRCVN
GQCICDERFMGEDCSELRCPSDCSNRGRCTNGWCECDEGYTGEDCGALKCPNDCHGRGRC
INGQCVCDEGFVGEDCGEQRCPSDCHNRGRCVDGQCVCDAAFTGVDCRELRCPNDCNHRG
RCVNGQCMCDEGYTGEDCAERRCPNDCNDRGRCLDGVCVCDQGFVGEDCHELACVNNCSG
RGRCVNGQCVCDEGYRGVDCSEHSCPNNCNDLGLCVDGRCVCEEGYVGIDCSDVSPPKDL
TVTDVTDKTVNLEWKNDNIVTEYLITYIPTGIGGLELEIQVPGNHTSATIKGLEPGVEYF
IRVFAILKNKKSIPISARVATYLPAPDGLKFKSVKETSVEVEWDPLDIPFSGWEIVFNSL
KEEDNGGIRSSLKRPQTSYQQPGLAPGQQYNVSLYVVKNQTRGPGLSRVVTTRLDAPSQI
EAQDVTDTTALITWFKPLAEIDGVELTYGPKDVPGARTSVDLSEDESQYSIGDLKPHTEY
EVTLISRRGDMESDPVTETFVTELDAPRNLKRLSQTDSTITLEWKNSQATPDSYRIKYAP
ISGGDHAEITVPRSNQATTKATLTGLRPGTEYGIGVTAVKQDKESAPATINAGTEMDSPK
DLRVSDPTETTLTLHWKRPWAKFDRYRLSYVTPLGKKNEIEIPADSTSHIIRALDAGVEY
TISLVAEKGRHKSKPSTVTGSTEEEPELGNLSVSDVHWDGFQLTWSAADGAYENFVVQVR
EPNNPADARNLTVPGSLRLVDLTGLQPSTFYIITLFGVTQGFKTKPLSVESTTAAKPKVG
DLTVSGITPESFNLSWTTTDGAFERFTIEIVDSNRLLEPKAYNVSGHLRTAHISGLSPQT
DFIIYLYGVTRGFRTQALSAAATTEAEPEVDNLLVSDATPEGFRLSWTADDGAFDSFVLK
IRDTNRLADPLELIIPGHERTHDITGLKEGTEYYIDLSGITSGRRSQPVNAVARTVMGSP
KEITFSDITENSALVSWTAPRTRVDSFRISYVPVTGGTPSTTTVDGSKRRAKLVKLIPGV
EYIVSIISVKGFEESEPVSGSLTTALDSPSGLVAVNITDSEALAIWQPAIAAVDDYVISY
LAEGDSEVTQSVSGNTVEYDLFGLRPATEYTLKIYAVKGPQRSTAITTKFTTGLDAPRDL
TASDIQFETALLTWRAPRASVTGYLLIYESVDGKVKEVILGPQSTSYSLSELSPSTQYTV
KLQALNRDLKSRIIQTIFTTTGLLYPYPRDCSQALLNGETASGLYTIYLNGNQSQPIKVY
CDMSSDGGGWIVFLRRQNGEEEFYRNWRTYEAGFGNPTGEFWLGLDSLHKITSQGQYELR
VDLRDHDETAYALYDKFSVGDAKTRYRLKVDGYSGTAGDSMTYHSGRPFSTFDKDSDSAI
TNCALSYKGAFWYKNCHRVNLMGRYGDNSHSQGVNWFHWKGHEYSIQFAEMKLRPYSFRN
LEGRRKRA
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atgggtctccccacgtgggtttgggccgtggcggtcctctctttgctccatcagtacgtc
agtggtggactcatcaagaggataattcggcagaagagggagacggggataaacgtcact
ttgccggaggacaatcagcccgtggtctttaaccacgtctacaatatcaaggtccccatg
ggcaacctctgctccgtggacttggaccccgccagtagagacacagaccttacatctgtc
gagccgggcagagattctcaggagcacacgccgaacgaggagaaccagatcgtcttcacg
cacagaatcaacatcccgcggcgagcctgcggttgcgcggcagcccccgatatcaaggat
ctcttaagcaggcttgaggaattggaggggctggtatcctctctacgagaccagtgtgcc
ggtggtgtgggctgctgcccaaccgggcaaacagctgtgggcattcttgaggccaagccg
tattgcagcgggcatggcaattacagcaacgaccactgtgggtgcatctgcgaacccggc
tggaaagggcccaattgctccgagccagaatgccctcagaattgtaaccaccggggccgc
tgtgtcgacggcaagtgtgtttgtgatgaaggctacaccggggaagcctgtgagcagcag
acctgtcctggggactgcaacgaccaaggcaaatgcatcgacgggcagtgtgtctgcttt
gacggcttcgccggggaggactgcagccaggaggtgtgcctagtgccctgcggcgagcac
gggacatgtgtgcaccagcaatgcatctgcgaggccggcttcaccggggcggattgcagc
gagccgctgtgcccaaacaactgcaacaaccgaggccgctgtgtggaagaggagtgcgtg
tgcgacgaagggtacaccggcgaagactgcggcgaactcatttgccccaacgactgttac
gaccgcggccgctgtgtcaacgggacctgctattgtgacccggggttcaccggggaggac
tgtggggaagtcgcctgcccggacaactgccacaaccaggggcgctgtgaaaacggcctg
tgcgtctgctacgaagggttcatgggagacgactgcggggagcggaggtgccccagtgac
tgcaaccggcgtgggcgctgcatcgacgggcagtgtgtctgccacgagggtttcttgggc
ttcgactgcggggaagtgaagtgccccaacgactgcaacagccggggccgctgtgtcaac
ggacagtgcatctgtgacgaacggttcatgggggaggactgcagtgaattaaggtgcccc
agcgactgcagcaaccgggggcggtgcaccaacggctggtgcgagtgtgacgagggctac
acgggggaggactgtggcgccttgaagtgcccgaacgactgtcacggccgcgggcggtgc
atcaacgggcagtgtgtctgcgacgagggctttgtgggcgaggactgtggtgagcagcgg
tgccccagcgactgccacaaccggggccgctgtgtcgacggccagtgtgtgtgcgacgcg
gccttcaccggggtcgactgccgcgaactgaggtgccccaatgactgcaaccaccgcggc
cgctgcgtcaacgggcagtgcatgtgcgacgaggggtacacaggggaggactgtgcagag
cggaggtgccccaacgattgtaacgaccgcgggcgctgcctcgacggggtgtgcgtgtgc
gaccaaggcttcgtaggcgaggactgccacgaactggcctgcgtgaacaactgcagcggc
cgagggcgctgcgtgaacgggcagtgcgtgtgcgacgaggggtaccgaggggtcgattgc
agcgaacactcttgccccaataactgcaatgatctgggcctctgcgtagacgggcgatgc
gtctgcgaagaaggctatgtaggcattgactgttcagatgtgtctcctccaaaagacctg
accgttacagatgtgacagataaaactgtgaacttggaatggaagaatgataatatcgtc
accgaatacctcatcacctacattcccactggcatcggtggtctagagctagaaatccaa
gttcctgggaatcacacctcggccaccatcaaggggttggagcctggtgtggagtatttc
atccgtgtatttgccatcctaaagaacaagaagagcatccccatcagcgcccgggtagcc
acttatttgcctgccccagatggcttgaagttcaaatctgttaaggagacgtcggtggaa
gtcgaatgggaccccctggacatcccattcagcgggtgggagatcgtctttaacagcttg
aaagaggaagacaatggtggtatcaggagcagcttgaagaggccacagacgtcctaccag
cagccagggctggcaccgggacagcaatacaacgtgtcactctatgtggtgaagaatcaa
accagggggcctggactctccagggtggtgactacaagacttgatgctcccagccagatt
gaggcacaagacgttacagataccacggcactgatcacatggtttaaacctttggctgaa
attgacggcgttgagctgacttacgggcctaaggatgtccccggggcccgaacctcagtt
gatctctcggaggacgaaagccaatattccatcggagacctgaagccacacacggagtat
gaggtgaccctaatatcccgacgtggggatatggaaagcgaccctgtgaccgagaccttt
gtcacagaactggatgctccaagaaatctgaaacgcctctctcagacagacagcaccatc
accctggaatggaagaacagtcaagcaactcctgactcctacaggatcaagtatgccccc
atttctggcggcgaccatgccgaaatcacagtgcccagaagcaaccaagccacgaccaaa
gccacactcacaggactgagacccggcacagaatatggcattggcgtgacggccgtgaag
caggataaagagagcgcccccgctaccattaatgctggaaccgaaatggatagccccaag
gacctgagggtcagtgaccctactgagaccactctcaccttgcattggaagaggccctgg
gccaaattcgatcgttatcgcctgtcttacgtgaccccattggggaagaagaatgaaata
gagattcctgcagatagcacgtctcatatcatacgagccctggatgctggagtagagtat
accatcagcctcgtggcagagaaaggcagacacaaaagcaagccctcaacagtgaccggt
tcaacggaggaggaacctgagctggggaatttgtcagtgtcagacgttcactgggatgga
ttccagctcacctggtcggccgcggacggggcctatgagaactttgtcgtgcaggtgcgg
gagccgaataatccagcagatgcgaggaatctcaccgttccaggcagcttgcgattggtg
gatctcactggcctccagccaagcacattttatattatcaccctctttggggtaactcag
ggcttcaagacaaaacccctctctgttgaatccaccacagcagcgaagcccaaagtcggc
gatctaaccgtttccggcattacccccgaaagcttcaacctttcctggacgaccacagac
ggggccttcgagaggtttaccattgaaattgttgattctaacaggttgctggaacccaag
gcgtacaacgtctcaggccatttaaggacggctcatatctcagggctgtctccccaaact
gatttcattatctacctctacggagtcacccgtggtttccgtacgcaggcgttgagcgct
gcagcgactacagaagcagaacccgaagtagacaaccttttggtttcagacgcgaccccg
gagggcttccgtctgtcttggacggcagacgacggagcctttgacagttttgttcttaaa
atcagggataccaacaggctggcagaccccctggagctcattatcccagggcatgaacgc
acccacgatataacagggctgaaggagggtactgaatattatattgacctctctggaatt
accagtggacggcgttcccagccggtaaacgcagttgctagaacagtgatgggatctccc
aaggaaatcactttctccgatatcaccgaaaactcagccctggtcagctggacagcccca
cggacacgtgtggatagcttccggatttcctacgtcccagttacaggaggtacccccagt
actacgaccgtggatggaagcaagagaagggccaaactggtaaagctgatccctggcgta
gagtatatcgtcagcatcatctctgtcaagggcttcgaagaaagcgagcccgtttctggc
tctctgaccacagctttggacagcccgtcaggtctggtggccgtgaacatcacggattcg
gaggcactggcgatctggcagccagcaattgctgcagtggacgactacgtgatttcctac
cttgctgagggcgattcagaggtaacgcagagcgtctcgggcaacactgtggaatacgac
ctcttcggcctccgtcctgcgactgaatatacactcaagatctatgctgttaagggacca
cagagaagcacggctatcaccactaaattcactacaggcctcgatgctccaagggacctg
accgccagcgacattcaatttgaaacggcactcttgacatggagggccccccgtgcctct
gtcaccggttacctgctgatctacgaatctgtggatggcaaggtcaaggaagtcatcttg
ggaccgcagtcgacttcctacagtttgtcggagctgagcccctcgacacagtacacggtg
aagttgcaggcgctgaatcgggacttgaaaagccggatcatccaaaccattttcaccaca
accggactcctgtatccgtaccccagagactgctcccaggccctgctgaatggagaaacg
gcgtcaggcctctacaccatttatctcaacggcaaccagtcccagcccatcaaggtctac
tgtgacatgagctccgacggaggcgggtggattgtgtttttaagaaggcagaatggagag
gaggagttctacagaaactggaggacgtatgaagctggatttggaaatcccacgggtgaa
ttctggcttggtctggattcgctccacaagatcacttcccagggccagtacgagctgcgt
gtggacttacgggaccacgatgagacagcctatgccctctacgacaagttcagcgtggga
gatgccaagacccgctaccggctgaaagtggatggatacagcggcactgcaggcgattcc
atgacctaccacagcggacgtccgttttccacgtttgacaaggacagcgactccgccatc
acgaattgcgccttgtcgtacaaaggggccttctggtacaaaaactgtcaccgtgtcaac
ctgatgggcagatacggagacaacagccacagccagggtgtgaattggttccattggaag
ggtcacgagtactccatccagtttgcagagatgaaactgagaccgtacagctttaggaat
ctagaaggccgacggaagagagcataa
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