Hemicordylus capensis (graceful crag lizard): 128339624
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Entry
128339624 CDS
T08891
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04510
Focal adhesion
hcg04512
ECM-receptor interaction
hcg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128339624 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128339624 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128339624 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hcg04147
]
128339624 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
hcg00536
]
128339624 (COL4A1)
Exosome [BR:
hcg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128339624 (COL4A1)
Glycosaminoglycan binding proteins [BR:
hcg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128339624 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128339624
NCBI-ProteinID:
XP_053139843
LinkDB
All DBs
Position
1:242987762..243202097
Genome browser
AA seq
1678 aa
AA seq
DB search
MYGSRLWSGAAILLAALLLSPEKRLTVAAAAACSGCGKCGCSGVKGQKGDRGFPGLQGLV
GFPGIQGHEGPPGHSGLKGDTGEPGLPGTKGTRGPPGPAGYPGNPGLPGIPGGDGPPGPP
GIPGCNGTKGESGPLGPPGLPGFPGNPGLQGPPGTKGDPGEVIGFLPNGVLKGEKGSAGR
PGLPGSPGLQGVQGPIGPPGPSGRPGPPGPAGPPGEKGHMGLKFQGPRGDKGERGVMGPP
GPPGLVPHEKEKGTILVRGEKGDPGEKGDYGFSGAPGLSSKGEKGEPGNPGSLGRPGKAG
EPGERGSSGETGQPGFPGLPGPDGLKGDKGVPGPAGPPGIVRDKEDIIVFGEKGDSGPPG
FTGPKGELGPKGFPGPPGPPGPPGQPSPGITGAPGFPGDRGEKGDRGPPGLSLPGPKGRD
GFTGPRGQPGPPGPPGITDGGLDCQPGQTGDSGSPGPPGPQGYPGESGEKGEKGDGCFCD
GFGPPGVPGPQGLPGQPGYPGPAGAKGDRGFPGSDGIPGVAGPSGAPGLTGNPGPKGEQG
DVFFDSDLKGDKGNPGIPGIPGAPGKEGRPGRDGLPGDPGPKGASGTIGLKGEHGPPGLS
GFPGVRGERGSPGAPGVGPAGPPGDKGDKGSAGFPGTPGLPGPQGEAGRAMLLPGSPGSD
GVPGSSGIPGIQGDKGDPGIPGRPGFPGEKGPPGLSGQGPPGLPGPPGFPGQPGPQGPTG
EKGETGPRGIPGSQGLQGQKGEAGVGLPGPKGFPGPQGRDGFPGIKGDRGLPGIPGEKGF
PGVVGQPGLQGDRGPDGLPGLQGSPGVPGIGPPGPSGPVGQPGPPGPIGPPGIKGDRGYP
GVPGLDMPGPKGDKGTHGTHGLPGLQGLPGPPGLQGREGQPGVPGIKGEMGVMGTPGTQG
PPGSIGTPGLQGEKGDSGFPGVAGIRGDPGFKGEKGEAGLPGKPGSMDRVDMERMKGQKG
EQGNKGQGGIIGEKGFQGERGTPGMPGKDGDPGLPGQAGPKGDLGPQGYPGEPGLPGQKG
SIGEMGLPGQAGVKGVQGLPGDPGVPGFPGARGVKGEKGEPGIAGIGLPGERGEKGELGK
TGSPGIAGEKGEKGIHGIPGFPGSQGEKGQPGLPGSQGIPGIPGERGEKGFPGLSGFPGI
KGQTGDPGLQGLPGAPGEKGEPGYDGIPGSPGPKGDSGIPGIGRPGTSGAKGERGAKGDM
GFPGSPGSPGIPGIKGEPGFVGPQGPVGQPGIPGIPGRLTEGPKGDRGPPGQPGFQGQPG
PQGSPGVPGLSGPKGEKGSPGWPGQAGRPGFKGDQGSQGIPGNAGFPGTVGSKGDMGPPG
IPGPHGQKGSSGFPGLKGEQGDQGFPGAKGFPGPPGPPGPYQLVKGEPGLPGSVGPVGPK
GLPGHPGPKGQQGVTGPVGPTGSPGTPGYDGAPGQKGETGPVGPPGPRGFPGPPGPEGIP
GSMGLPGAPSVAHGFLVTRHSQTTEEPSCPSGTRLMYYGYSLLYVQGNERAHGQDLGTAG
SCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGESIRPFISRCTVC
EAPAMVMAVHSQTVQIPPCPEGWRSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSA
PFIECHGKGTCNYYANAYSFWLATIEKHEMFKKPTPSTLKAGELSSNVSRCQVCMRRT
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcagcaggctgtggagcggcgccgcgatcctgctggctgcgctcctgctcagc
ccagaaaagcgcttgacggtggcggcggcggcggcttgctctggctgtggaaaatgtggc
tgcagtggagtaaaggggcaaaaaggtgatagaggttttccaggcttacaaggtttggtt
ggatttcctggaattcaaggacatgaagggcccccagggcactcaggactgaagggtgat
actggagaaccaggactaccaggaacaaaaggaacaagaggcccgccaggtccagcaggc
tatccaggaaaccctggccttcctggcatccctggaggagatggtcccccaggtcctcct
ggtatcccaggatgcaatggaacaaagggtgaaagcggcccccttggtcccccaggttta
cctggattcccaggaaatccagggctccaaggacctccaggcacaaagggagacccagga
gaagttattggatttctaccaaatggtgtactaaaaggcgaaaagggctctgctggccga
cctggattaccgggatcacctggattacaaggtgttcaaggccctattggaccacctgga
ccttcaggaagaccaggtcctccagggccagctggtcccccaggtgagaagggtcatatg
ggtttgaaatttcagggaccaagaggtgacaagggtgaacggggagtcatgggaccccca
ggtcccccaggacttgttccgcatgagaaagagaaagggaccatactcgtacgcggagag
aaaggtgatcctggtgaaaagggtgactatggcttctcaggagcaccaggcttaagcagc
aaaggggagaaaggtgaacctgggaaccctggttcattgggaagacctgggaaggctgga
gagcctggagaaaggggaagtagtggagaaactggccagccaggatttccaggactacct
ggcccagatggcctcaagggagataagggtgtaccaggtcctgcaggacctccaggaata
gttagagataaagaagacataatagtatttggtgaaaaaggagattcaggtccgccagga
ttcacaggtccaaaaggtgaactgggtcccaaaggttttccagggccaccagggccacca
ggtcctccagggcaacccagcccagggataacaggggcacctggttttcctggcgataga
ggagaaaagggtgatcgggggccccctggactttctttgcctgggccaaaaggaagagat
ggatttacaggacctcgtggccaaccaggccctccaggcccacctggcataacagatggc
ggtctggattgtcaacctggacaaactggtgatagtggctctccaggccctcctggccca
caaggctatccaggggaaagtggagaaaaaggtgaaaagggtgacggttgtttttgtgat
ggatttggcccgcctggagtaccaggcccccaagggcttccaggacaaccaggttatcca
ggaccagcaggtgctaaaggggacaggggctttcctggatctgatggcatcccaggagtg
gcaggaccttcaggtgcacctggattaactggaaacccaggaccaaaaggagaacaagga
gatgtgttttttgactctgatttaaaaggtgataaaggaaatcctggtattcctggaatt
ccaggagctcctggtaaagaaggaaggccagggcgagatggcctgccaggtgacccaggt
cctaaaggtgcatcgggaaccattggattaaaaggagaacatgggcccccaggattaagt
ggttttccaggggtccgtggagagagaggctctcctggtgctccaggagttgggcctgct
gggccacctggagataaaggggacaaaggtagtgcaggattccctggcacaccaggactt
ccagggccccaaggcgaagctgggcgtgccatgttgctgcctggctccccaggatcagat
ggtgttcctggatcttctggaattccaggcatccaaggtgacaaaggagatcctgggatc
ccaggaagacctggcttcccaggtgaaaagggtccaccagggttatcagggcaaggacct
cctggccttccagggcctccaggttttccaggtcagccaggcccacaaggtccaacgggg
gagaaaggggaaactggtcccagagggataccaggttcacaagggttacaaggccaaaaa
ggtgaagctggagtaggtctcccaggtcctaaagggtttcccggcccacaaggaagagat
ggctttcctggaataaaaggggatcgagggctacctggcataccaggagaaaaagggttt
ccaggtgtggttggccaaccaggcttgcaaggtgaccgaggtcctgatggattaccaggt
ctacagggctcccctggtgtaccaggaataggccctcctggcccttcagggcctgtagga
caacctggacctccaggaccaataggacctccaggaataaagggagacaggggctaccca
ggtgtccccggtctagatatgccagggccaaaaggagataaaggtacccatggaacacac
ggactgcccggtttgcaaggattgccaggcccaccaggccttcaaggaagagaaggccaa
ccaggtgttccagggatcaaaggagaaatgggagttatgggaacccctggaacccaaggt
cctcctggctctataggaactcctggactccaaggtgaaaaaggtgactcaggttttcct
ggcgtggcaggaatcagaggtgatcctggtttcaaaggtgaaaaaggtgaagctggtcta
ccaggaaagccaggatcaatggaccgtgtggatatggaaaggatgaaaggtcaaaaggga
gagcaaggaaataaagggcaaggaggcataataggagagaagggatttcaaggagaacgt
ggcacaccaggaatgccagggaaggatggagatcctggtttacctggtcaagcaggtcca
aaaggggacctgggtcctcaaggatacccaggagaaccagggctgcctggacaaaagggt
tcaataggagaaatgggcctgccaggacaggcaggagtgaaaggagtgcaaggtcttcca
ggtgatcctggtgtaccagggtttcctggagcaagaggtgtgaaaggagagaaaggagag
cctggaattgcaggaattggccttcctggggagcgtggtgagaagggagaattggggaaa
acaggtagtcctggcatagctggagaaaaaggagaaaagggtattcatggaattccaggt
ttccctggttcccaaggtgagaaaggacaaccaggtcttccaggttctcaaggtattcca
ggcatcccaggagaaaggggtgaaaaaggatttccaggcttgagtggttttccaggcata
aaaggacaaacaggtgaccctgggctccaaggtcttccaggtgcacctggagaaaagggt
gaaccaggttatgatggaatcccaggttcacctggtccaaaaggggactcaggtattcca
ggcattggacgtcctggaacttcaggtgctaaaggagaaagaggtgcaaaaggagatatg
ggttttccgggatccccaggaagtccaggaattcctggtataaaaggagaaccaggattc
gttggtccacaaggccccgtgggtcaaccaggcattcctggaataccaggcagactcaca
gagggacctaagggtgaccgaggaccccccgggcaacctgggtttcaaggacaacctggg
ccacaaggatctccaggagttccaggattatcagggccaaaaggagaaaaaggaagccca
ggttggcctggacaagctggaagacctggattcaaaggggaccagggatctcagggaatc
ccgggcaatgctggctttcctggaactgttggctcaaaaggtgacatgggacctcctgga
attccaggccctcatggtcaaaaaggttcttcaggtttccctggactcaaaggagaacaa
ggtgatcaagggtttcctggagctaaaggtttcccaggaccaccaggtcctccaggccct
taccagcttgtgaaaggtgaaccaggtttacctggttctgtaggtccagttggtcccaaa
ggacttcctggtcatccaggcccaaaaggacaacaaggtgttacaggacctgtgggtcca
actggatccccgggcactccaggatatgatggagcacctggtcagaaaggagaaactggt
cctgttggtcctccaggtcctagaggctttcctggcccacctggccctgaaggcatacca
gggtcaatgggtctaccaggcgctccctctgtagctcatggcttcctcgtgaccaggcac
agtcaaaccacagaagagccatcatgtccatctggaacaaggctaatgtactatgggtat
tccttactttacgtacaaggaaatgaaagagcccatggccaagacttgggcacagcaggg
agctgtctacgaaaattcagcacaatgcctttcctgttctgcaacatcaacaatgtgtgc
aattttgcctcgaggaatgactattcttactggctgtctacccctgagccaatgccaatg
agtatggctcccattacaggagagagcatcaggcctttcatcagtaggtgtactgtgtgt
gaagctcctgctatggtgatggcagttcacagtcaaacagtccaaattccaccatgtcca
gaaggctggagatccctctggataggttactcatttgtgatgcatacgagtgctggtgca
gagggctctgggcaagctctggcttctcccggttcctgtcttgaagagttccgcagcgct
ccattcatcgaatgccatggcaagggcacctgcaattattatgccaatgcttacagcttt
tggcttgccactattgagaaacatgaaatgttcaagaaacctactccatctactctgaaa
gcaggtgaactaagctcaaacgttagccgttgccaagtctgtatgagaagaacataa
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integrated database retrieval system
