Hemicordylus capensis (graceful crag lizard): 128339624
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Entry
128339624 CDS
T08891
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04382
Cornified envelope formation
hcg04510
Focal adhesion
hcg04512
ECM-receptor interaction
hcg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128339624 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128339624 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128339624 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128339624 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hcg04147
]
128339624 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
hcg00536
]
128339624 (COL4A1)
Exosome [BR:
hcg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128339624 (COL4A1)
Glycosaminoglycan binding proteins [BR:
hcg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128339624 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128339624
NCBI-ProteinID:
XP_053139843
LinkDB
All DBs
Position
1:242987762..243202097
Genome browser
AA seq
1678 aa
AA seq
DB search
MYGSRLWSGAAILLAALLLSPEKRLTVAAAAACSGCGKCGCSGVKGQKGDRGFPGLQGLV
GFPGIQGHEGPPGHSGLKGDTGEPGLPGTKGTRGPPGPAGYPGNPGLPGIPGGDGPPGPP
GIPGCNGTKGESGPLGPPGLPGFPGNPGLQGPPGTKGDPGEVIGFLPNGVLKGEKGSAGR
PGLPGSPGLQGVQGPIGPPGPSGRPGPPGPAGPPGEKGHMGLKFQGPRGDKGERGVMGPP
GPPGLVPHEKEKGTILVRGEKGDPGEKGDYGFSGAPGLSSKGEKGEPGNPGSLGRPGKAG
EPGERGSSGETGQPGFPGLPGPDGLKGDKGVPGPAGPPGIVRDKEDIIVFGEKGDSGPPG
FTGPKGELGPKGFPGPPGPPGPPGQPSPGITGAPGFPGDRGEKGDRGPPGLSLPGPKGRD
GFTGPRGQPGPPGPPGITDGGLDCQPGQTGDSGSPGPPGPQGYPGESGEKGEKGDGCFCD
GFGPPGVPGPQGLPGQPGYPGPAGAKGDRGFPGSDGIPGVAGPSGAPGLTGNPGPKGEQG
DVFFDSDLKGDKGNPGIPGIPGAPGKEGRPGRDGLPGDPGPKGASGTIGLKGEHGPPGLS
GFPGVRGERGSPGAPGVGPAGPPGDKGDKGSAGFPGTPGLPGPQGEAGRAMLLPGSPGSD
GVPGSSGIPGIQGDKGDPGIPGRPGFPGEKGPPGLSGQGPPGLPGPPGFPGQPGPQGPTG
EKGETGPRGIPGSQGLQGQKGEAGVGLPGPKGFPGPQGRDGFPGIKGDRGLPGIPGEKGF
PGVVGQPGLQGDRGPDGLPGLQGSPGVPGIGPPGPSGPVGQPGPPGPIGPPGIKGDRGYP
GVPGLDMPGPKGDKGTHGTHGLPGLQGLPGPPGLQGREGQPGVPGIKGEMGVMGTPGTQG
PPGSIGTPGLQGEKGDSGFPGVAGIRGDPGFKGEKGEAGLPGKPGSMDRVDMERMKGQKG
EQGNKGQGGIIGEKGFQGERGTPGMPGKDGDPGLPGQAGPKGDLGPQGYPGEPGLPGQKG
SIGEMGLPGQAGVKGVQGLPGDPGVPGFPGARGVKGEKGEPGIAGIGLPGERGEKGELGK
TGSPGIAGEKGEKGIHGIPGFPGSQGEKGQPGLPGSQGIPGIPGERGEKGFPGLSGFPGI
KGQTGDPGLQGLPGAPGEKGEPGYDGIPGSPGPKGDSGIPGIGRPGTSGAKGERGAKGDM
GFPGSPGSPGIPGIKGEPGFVGPQGPVGQPGIPGIPGRLTEGPKGDRGPPGQPGFQGQPG
PQGSPGVPGLSGPKGEKGSPGWPGQAGRPGFKGDQGSQGIPGNAGFPGTVGSKGDMGPPG
IPGPHGQKGSSGFPGLKGEQGDQGFPGAKGFPGPPGPPGPYQLVKGEPGLPGSVGPVGPK
GLPGHPGPKGQQGVTGPVGPTGSPGTPGYDGAPGQKGETGPVGPPGPRGFPGPPGPEGIP
GSMGLPGAPSVAHGFLVTRHSQTTEEPSCPSGTRLMYYGYSLLYVQGNERAHGQDLGTAG
SCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGESIRPFISRCTVC
EAPAMVMAVHSQTVQIPPCPEGWRSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSA
PFIECHGKGTCNYYANAYSFWLATIEKHEMFKKPTPSTLKAGELSSNVSRCQVCMRRT
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcagcaggctgtggagcggcgccgcgatcctgctggctgcgctcctgctcagc
ccagaaaagcgcttgacggtggcggcggcggcggcttgctctggctgtggaaaatgtggc
tgcagtggagtaaaggggcaaaaaggtgatagaggttttccaggcttacaaggtttggtt
ggatttcctggaattcaaggacatgaagggcccccagggcactcaggactgaagggtgat
actggagaaccaggactaccaggaacaaaaggaacaagaggcccgccaggtccagcaggc
tatccaggaaaccctggccttcctggcatccctggaggagatggtcccccaggtcctcct
ggtatcccaggatgcaatggaacaaagggtgaaagcggcccccttggtcccccaggttta
cctggattcccaggaaatccagggctccaaggacctccaggcacaaagggagacccagga
gaagttattggatttctaccaaatggtgtactaaaaggcgaaaagggctctgctggccga
cctggattaccgggatcacctggattacaaggtgttcaaggccctattggaccacctgga
ccttcaggaagaccaggtcctccagggccagctggtcccccaggtgagaagggtcatatg
ggtttgaaatttcagggaccaagaggtgacaagggtgaacggggagtcatgggaccccca
ggtcccccaggacttgttccgcatgagaaagagaaagggaccatactcgtacgcggagag
aaaggtgatcctggtgaaaagggtgactatggcttctcaggagcaccaggcttaagcagc
aaaggggagaaaggtgaacctgggaaccctggttcattgggaagacctgggaaggctgga
gagcctggagaaaggggaagtagtggagaaactggccagccaggatttccaggactacct
ggcccagatggcctcaagggagataagggtgtaccaggtcctgcaggacctccaggaata
gttagagataaagaagacataatagtatttggtgaaaaaggagattcaggtccgccagga
ttcacaggtccaaaaggtgaactgggtcccaaaggttttccagggccaccagggccacca
ggtcctccagggcaacccagcccagggataacaggggcacctggttttcctggcgataga
ggagaaaagggtgatcgggggccccctggactttctttgcctgggccaaaaggaagagat
ggatttacaggacctcgtggccaaccaggccctccaggcccacctggcataacagatggc
ggtctggattgtcaacctggacaaactggtgatagtggctctccaggccctcctggccca
caaggctatccaggggaaagtggagaaaaaggtgaaaagggtgacggttgtttttgtgat
ggatttggcccgcctggagtaccaggcccccaagggcttccaggacaaccaggttatcca
ggaccagcaggtgctaaaggggacaggggctttcctggatctgatggcatcccaggagtg
gcaggaccttcaggtgcacctggattaactggaaacccaggaccaaaaggagaacaagga
gatgtgttttttgactctgatttaaaaggtgataaaggaaatcctggtattcctggaatt
ccaggagctcctggtaaagaaggaaggccagggcgagatggcctgccaggtgacccaggt
cctaaaggtgcatcgggaaccattggattaaaaggagaacatgggcccccaggattaagt
ggttttccaggggtccgtggagagagaggctctcctggtgctccaggagttgggcctgct
gggccacctggagataaaggggacaaaggtagtgcaggattccctggcacaccaggactt
ccagggccccaaggcgaagctgggcgtgccatgttgctgcctggctccccaggatcagat
ggtgttcctggatcttctggaattccaggcatccaaggtgacaaaggagatcctgggatc
ccaggaagacctggcttcccaggtgaaaagggtccaccagggttatcagggcaaggacct
cctggccttccagggcctccaggttttccaggtcagccaggcccacaaggtccaacgggg
gagaaaggggaaactggtcccagagggataccaggttcacaagggttacaaggccaaaaa
ggtgaagctggagtaggtctcccaggtcctaaagggtttcccggcccacaaggaagagat
ggctttcctggaataaaaggggatcgagggctacctggcataccaggagaaaaagggttt
ccaggtgtggttggccaaccaggcttgcaaggtgaccgaggtcctgatggattaccaggt
ctacagggctcccctggtgtaccaggaataggccctcctggcccttcagggcctgtagga
caacctggacctccaggaccaataggacctccaggaataaagggagacaggggctaccca
ggtgtccccggtctagatatgccagggccaaaaggagataaaggtacccatggaacacac
ggactgcccggtttgcaaggattgccaggcccaccaggccttcaaggaagagaaggccaa
ccaggtgttccagggatcaaaggagaaatgggagttatgggaacccctggaacccaaggt
cctcctggctctataggaactcctggactccaaggtgaaaaaggtgactcaggttttcct
ggcgtggcaggaatcagaggtgatcctggtttcaaaggtgaaaaaggtgaagctggtcta
ccaggaaagccaggatcaatggaccgtgtggatatggaaaggatgaaaggtcaaaaggga
gagcaaggaaataaagggcaaggaggcataataggagagaagggatttcaaggagaacgt
ggcacaccaggaatgccagggaaggatggagatcctggtttacctggtcaagcaggtcca
aaaggggacctgggtcctcaaggatacccaggagaaccagggctgcctggacaaaagggt
tcaataggagaaatgggcctgccaggacaggcaggagtgaaaggagtgcaaggtcttcca
ggtgatcctggtgtaccagggtttcctggagcaagaggtgtgaaaggagagaaaggagag
cctggaattgcaggaattggccttcctggggagcgtggtgagaagggagaattggggaaa
acaggtagtcctggcatagctggagaaaaaggagaaaagggtattcatggaattccaggt
ttccctggttcccaaggtgagaaaggacaaccaggtcttccaggttctcaaggtattcca
ggcatcccaggagaaaggggtgaaaaaggatttccaggcttgagtggttttccaggcata
aaaggacaaacaggtgaccctgggctccaaggtcttccaggtgcacctggagaaaagggt
gaaccaggttatgatggaatcccaggttcacctggtccaaaaggggactcaggtattcca
ggcattggacgtcctggaacttcaggtgctaaaggagaaagaggtgcaaaaggagatatg
ggttttccgggatccccaggaagtccaggaattcctggtataaaaggagaaccaggattc
gttggtccacaaggccccgtgggtcaaccaggcattcctggaataccaggcagactcaca
gagggacctaagggtgaccgaggaccccccgggcaacctgggtttcaaggacaacctggg
ccacaaggatctccaggagttccaggattatcagggccaaaaggagaaaaaggaagccca
ggttggcctggacaagctggaagacctggattcaaaggggaccagggatctcagggaatc
ccgggcaatgctggctttcctggaactgttggctcaaaaggtgacatgggacctcctgga
attccaggccctcatggtcaaaaaggttcttcaggtttccctggactcaaaggagaacaa
ggtgatcaagggtttcctggagctaaaggtttcccaggaccaccaggtcctccaggccct
taccagcttgtgaaaggtgaaccaggtttacctggttctgtaggtccagttggtcccaaa
ggacttcctggtcatccaggcccaaaaggacaacaaggtgttacaggacctgtgggtcca
actggatccccgggcactccaggatatgatggagcacctggtcagaaaggagaaactggt
cctgttggtcctccaggtcctagaggctttcctggcccacctggccctgaaggcatacca
gggtcaatgggtctaccaggcgctccctctgtagctcatggcttcctcgtgaccaggcac
agtcaaaccacagaagagccatcatgtccatctggaacaaggctaatgtactatgggtat
tccttactttacgtacaaggaaatgaaagagcccatggccaagacttgggcacagcaggg
agctgtctacgaaaattcagcacaatgcctttcctgttctgcaacatcaacaatgtgtgc
aattttgcctcgaggaatgactattcttactggctgtctacccctgagccaatgccaatg
agtatggctcccattacaggagagagcatcaggcctttcatcagtaggtgtactgtgtgt
gaagctcctgctatggtgatggcagttcacagtcaaacagtccaaattccaccatgtcca
gaaggctggagatccctctggataggttactcatttgtgatgcatacgagtgctggtgca
gagggctctgggcaagctctggcttctcccggttcctgtcttgaagagttccgcagcgct
ccattcatcgaatgccatggcaagggcacctgcaattattatgccaatgcttacagcttt
tggcttgccactattgagaaacatgaaatgttcaagaaacctactccatctactctgaaa
gcaggtgaactaagctcaaacgttagccgttgccaagtctgtatgagaagaacataa
DBGET
integrated database retrieval system
