Hemicordylus capensis (graceful crag lizard): 128340247
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Entry
128340247 CDS
T08891
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04510
Focal adhesion
hcg04512
ECM-receptor interaction
hcg04518
Integrin signaling
hcg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128340247 (COL6A2)
04518 Integrin signaling
128340247 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128340247 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128340247 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hcg04147
]
128340247 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
hcg00536
]
128340247 (COL6A2)
Exosome [BR:
hcg04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128340247 (COL6A2)
Glycosaminoglycan binding proteins [BR:
hcg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128340247 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
128340247 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
128340247
NCBI-ProteinID:
XP_053141153
LinkDB
All DBs
Position
1:complement(227948323..228036076)
Genome browser
AA seq
1017 aa
AA seq
DB search
MFSKAFLAVLLYTTLVPLRAQNGEDGASSCADKTNCPISVYFVIDTSESIALQTVPIQSL
IDNIKRFVPDFINKLENELYQSQVAITWQFGGLHFSDVVKFYSDFTSDKSEYITRLKNIE
YIGRGTFTDCALSNMTATIRNRGGQNYVIVITDGHVTGSPCGGIKLQAERAREAGIKLFA
VAPNQNIHEQGLREIASSPHELFRNNYIITKIDPITKKDTIDVNTDTIDRIIQVMKHDSY
GECYKMSCLEYIGPTGPKGFRGQKGAKGNMGVPGSPGPKGRQGDPGIEGPIGYPGPKGVP
GLKGEKGEFGGDGRKGSSGLAGRNGTDGQKGKLGRIGPPGCKGDSGDRGADGYLGSAGDQ
GPAGDPGIKGDRGRPGRSGPPGAPGEKGLKGQNGSNGSPGSHGTKGGKGTPGSPGPKGEP
GRRGDPGTKGGAGTPGSKGEKGDPGLEGPRGLLGEVGEKGGRGDRGLPGPRGPQGGVGEP
GNPGSRGDSGETGERGDPGVPGPKGDRGRPGFNYPGPRGPPGEKGEKGLPGPEGTRGDYG
AKGTKGTKGPKGEPGDPSPPGEPGLRGPLGEEGPEGSPGPPGDPGLTDCDVMTYVRETCG
CCDCEKQCGPLDIVFVLDSSESIGYTNFSLEKNFVINVVSRLGSIAKDPKSETGARVGVV
QYSHDGTFEAIQLNDERIDSLSSFKEAVKKLEWIAGGTWTLSALQFAYDTLIKESQRQKA
RVFAVVVTDGRYDPQDTANLQALCGTGVVVNAIGIGDMFSVSGDDETLRSIACNDGQRVQ
KMKLFTDLVAEEFIDSMEHELCPDPQIVCPDLPCQTELAVAQCTQRPVDVVFFLDGSERI
GELNFHKAHHFIGHVAERLTLAGNDSDNMNARIALLQYGSENEQQVVFPLTYNLNNISDA
LSQIKYLDSSSNIGSAIIYAINNLVLGSRSNQRARRNAELSFVFITDGITGNENLKESIN
AMKKQNVMPTVVALGSDVDMDVLLKIGLGDQAAIFREKDYDSLSQPGFLDRFVRWIC
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgttttccaaagcctttttagctgttttgctctacacaaccctggttcccctccgggca
caaaatggtgaagatggagcttcttcttgtgcagataaaacgaactgccccatcagtgtc
tactttgtgatcgacacatcagagagcattgccctgcagactgtgcccatccagagcctg
attgacaacatcaagcgctttgtccctgattttatcaataagttagagaatgagctctac
cagagccaagtagccatcacttggcagtttgggggacttcacttttcagacgtagtcaag
ttctacagtgacttcaccagtgacaagtctgaatacatcactcgcttgaaaaacatcgag
tatattggcaggggcaccttcacagactgtgctctctccaacatgacggcaacgatacgc
aacaggggagggcagaactatgtaattgtaattactgatggccatgtgacggggagcccg
tgtggagggataaagctgcaagctgaaagagcgcgagaggcagggatcaagctctttgca
gtggcccctaaccagaacatccatgagcagggactccgagagattgccagctctccacat
gagcttttccgtaataactatatcatcacgaagatagatcccatcacaaagaaggatacc
attgatgtaaataccgacacaattgataggatcatccaagtgatgaaacatgattcctat
ggagagtgctacaagatgagctgcctggaatatatcgggccaactggtccaaagggcttt
cggggacaaaagggtgcaaagggtaacatgggagtcccaggttctcctgggccaaaagga
cgacagggtgacccaggaattgaaggtccaattggatatcctggtcccaagggtgttcct
ggtctaaaaggagaaaagggagagtttggaggagatggacgaaaggggagcagcggtttg
gctggaaggaatggcaccgatggacagaagggcaagttgggacgtattggacctcctggc
tgtaagggcgactcaggtgacaggggtgctgacggttatcttggaagtgctggtgatcaa
ggaccagcaggagacccagggataaagggtgatcgtgggcggcctggccgtagtggacca
ccaggggcccctggagagaaaggactcaagggacaaaatggcagcaatggatctcctggc
agtcatggtaccaagggaggcaaaggtacccctggatctcctgggcccaaaggagaaccg
ggtcgtcgtggtgatcctggaactaaagggggtgctggaactcctggatccaagggggag
aagggagatcctggtcttgagggcccaagagggctgctaggagaagttggagaaaaagga
ggaaggggagatcgaggattgcctggtccacgaggtcctcagggtggtgtgggtgaacca
ggcaacccgggctcacgaggggattccggtgagacaggtgaaaggggtgacccaggtgtt
ccaggaccaaagggagacagagggagacctggctttaactatcctggacccagaggaccc
ccgggtgagaaaggtgagaagggccttccaggaccagagggcacaagaggagactatgga
gcaaaaggcaccaaaggaacaaaaggccctaagggtgaacctggtgaccctagcccacca
ggtgagcctggactcagaggacctcttggtgaagaaggacctgagggtagccctggccct
cctggagatcccggcttaactgactgtgatgtgatgacctacgtcagagagacctgtggc
tgttgtgactgtgaaaagcagtgtggccccttggacatagtctttgtcctagacagttca
gagagtattggctacaccaatttctccttggagaagaactttgtcatcaatgtggtgagc
agacttggctctattgccaaggatccaaaatccgaaacaggtgcccgtgttggggtggtg
cagtacagccatgacgggacatttgaagccatccagctgaatgatgagcgcatcgactcc
ctctccagtttcaaagaggcagtgaagaagttggagtggattgcaggcggtacttggacc
ctctctgcacttcagtttgcctacgataccctcataaaagaaagccaacgacagaaagcc
cgtgtgtttgctgtagtggtgactgatgggcgctatgatccacaagatactgccaactta
caggccctctgtgggaccggtgttgtcgtcaatgccattgggattggagacatgttcagc
gtgtcgggtgatgatgagaccctgcgctctattgcctgcaatgatggccagagagttcag
aaaatgaagttatttacagatttggtggctgaagaattcattgacagcatggaacatgag
ctctgtccagatcctcagattgtctgccctgatctgccctgtcaaacagagcttgctgtt
gctcagtgcacccagcgcccagttgatgtcgtcttcttcttggatggctctgaaagaatt
ggcgagctgaatttccacaaggcccaccatttcataggacatgtggctgaacgtctcaca
ttggccggaaatgacagtgacaatatgaatgcacgcattgccctcctacagtatggaagt
gaaaatgaacagcaggtagttttcccattgacatacaacctcaataacatctcagatgcc
ttatctcagatcaaatacttggactcttcttccaacattgggtctgccatcatctatgct
atcaacaaccttgtcctcggttcaagaagcaatcaaagggcccgacgcaatgctgagctt
tcatttgtcttcattacagatggcatcacaggcaacgaaaacctaaaagaatccatcaat
gccatgaagaagcaaaatgttatgcccacggtggtggccttaggcagtgatgtagacatg
gatgtcctgctgaagattggtctaggagaccaggcagccattttccgggagaaggactac
gacagcctctcccaacctggtttccttgacagatttgttaggtggatctgttag
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