Hemicordylus capensis (graceful crag lizard): 128340637
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Entry
128340637 CDS
T08891
Symbol
SDC1
Name
(RefSeq) syndecan-1 isoform X1
KO
K06257
syndecan 1
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04512
ECM-receptor interaction
hcg04514
Cell adhesion molecule (CAM) interaction
hcg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128340637 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
128340637 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128340637 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hcg04131
]
128340637 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
hcg04090
]
128340637 (SDC1)
00535 Proteoglycans [BR:
hcg00535
]
128340637 (SDC1)
Membrane trafficking [BR:
hcg04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
128340637 (SDC1)
CD molecules [BR:
hcg04090
]
Proteins
128340637 (SDC1)
Proteoglycans [BR:
hcg00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
128340637 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
128340637
NCBI-ProteinID:
XP_053141947
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All DBs
Position
1:272606940..272638356
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AA seq
338 aa
AA seq
DB search
MARLVLAGALCALAFGFQAVLTQTTDISLPPEDLDSSGDDDDSFSGSGAGSLLEHPVIPR
TVALQGSTNASISVVSAHVPSQQPEVQTADSPIEDNERVPVSPTSTPVLQTSDLVTDKPA
VPIGDEMGSLAEQATTRSAATTRSAVVTTKIPVTHHISTVRITTSQASSTVRVAEPEIHP
DHPYLSNSDKEVTIHTVSTSETSLDAPSPTTSITILHNDIFSPLPEEDILSPEDGSGDQG
DFTFNLLDDKIEAKGSEPENRAGDTGTHDAKSAGIMDRKEVLGGVIAGGFVGLLFAGFLV
GFMLYRMKKKDEGSYSLDEPKQSNGGYQKPHKQEEFYA
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggctggttctcgcaggggcgctgtgcgctttggcctttggcttccaggcggtc
ttgacgcaaacgactgacatcagtctcccacctgaagacctggactcatcgggtgatgat
gatgactctttctctggctctggtgcaggttctttgctagagcatcctgtgattccccgg
actgttgcattacaaggaagcacaaatgcatcaatctctgtagtgtcggctcatgtccca
agtcagcaacctgaagttcagacagcagacagccctatagaagacaatgaaagagtacct
gtatccccaacaagcacccctgtactccaaacaagcgatctggtgactgacaagccagca
gtacctattggagatgagatgggctcacttgctgagcaagctacaacaaggtcagcagct
acaacaaggtcagcagttgtaacgacaaaaatcccagtgactcatcatatttccacagtc
agaatcacaacctctcaagcctctagcacagtcagagttgctgagcctgaaatccatcct
gatcacccttatctatctaacagtgataaagaagtgactattcacactgtgtcaacgagt
gagactagcttggatgctcccagtcccactacaagcatcactattcttcataatgatatc
ttttctcctctgcctgaagaagatattttatcacctgaagatggttctggtgatcagggt
gacttcacatttaacctacttgatgacaaaatagaagcaaagggatctgaaccagagaac
agagcaggggatacaggaacacatgatgcaaaatctgcaggaataatggataggaaagaa
gttctaggaggggtcatcgctggtggatttgtaggcttgctgtttgctggatttttagtt
gggttcatgctgtacagaatgaagaaaaaagatgaaggaagctattcattggatgaacca
aaacaatcaaatgggggttatcaaaaaccacacaaacaagaagaattctatgcatga
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