Hemicordylus capensis (graceful crag lizard): 128340910
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Entry
128340910 CDS
T08891
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04510
Focal adhesion
hcg04512
ECM-receptor interaction
hcg04518
Integrin signaling
hcg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128340910 (COL9A1)
04518 Integrin signaling
128340910 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128340910 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128340910 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hcg00535
]
128340910 (COL9A1)
Proteoglycans [BR:
hcg00535
]
Extracellular matrix (ECM) proteoglycans
Others
128340910 (COL9A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
128340910
NCBI-ProteinID:
XP_053142722
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All DBs
Position
1:complement(304281325..304486356)
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AA seq
968 aa
AA seq
DB search
MDKLVTVSRVPLPKFPSTWLYLESPWPQTLMREVSKGEGDVLPSGIMTEFAWHYPIFFCM
CCFLGFLGSAVTQQQTRFPVTFSSNMKTDLCPLTRIGQDDLPGYDLISQFQLDKAASRGI
IQRVVGSTDLQVAYKLGTNVDFRIPTRSLYPNGLPDEYSILTTFRMTGNTLQKYWSIWQV
LDSSGKEQVGLKLNGQAMSLEYSYKRTDGTLQTVTFLDLPHLFDSQWHKVMIGIEKSAVT
LYIDCIMIQTLTIEPRGKINVDGFTVLGKLKNNPQISVPFEIQWMLIHCDPLRPQRETCS
ELTARSSISQTATKRGPPGPQGPPGPPGPPGVPGIDGIDGDRGPNGPTGPPGPDGEPGKP
GVPGLPGVPGADGLTGPDGSVGPTGPKGQKGEPGLPGGRGLPGKGIPGSPGPPGIAGLPG
EVGRVGPSGDPGRRGPPGVPGPPGPRGTVGLRDGDPLCPNACPPGRPGHAGLMGMKGHKG
VRGDDGEPGKQGHKGEEGEQGGIGDVGASGPPGPPGLRGITGILGPKGDKGARGLDGESG
PRGLPGAPGDQGQRGALGETGPKGERGPQGIRGITGLPGPKGESGLPGVDGREGIPGMPG
SKGEPGKPGPPGDAGVQGLPGFPGSPGAKGVAGSKGNVGPPGIPGLMGNSGKPGDQGPQG
VEGPIGPRGPPGGRGEPGPAGPPGLPGKMGAEGDIGLPGLPGPPGLPGAQGDRGSVGEPG
PKGDQGAAGGEGEPGGRGDLGDMGLPGPKGSVGNPGESGSRGPEGSRGLPGVEGLRGPPG
PRGLQGEQGATGLPGSQGPAGREPSDAHIKQVCMRVMQEQLAQLAASLRRPEFGAPGLPG
RPGPPGVPGSPGENGFPGQLGSRGLPGLKGPPGDIGLKGPKGETGEKGERGFPGRGPKGL
PGTTGLPGEPGKPSYGTEGRDGDRGPPGTAGLPGVPGPPGPPGPPGYCEPSACTVQAGLR
VDKNVKGP
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggacaagcttgtgacagtctccagggtacctcttcccaagtttccctccacatggctc
tatttagagtctccatggcctcagactctcatgagggaggtgtccaagggagaaggggat
gttttgccatcaggcatcatgactgaatttgcttggcactatcccattttcttttgtatg
tgctgttttctgggctttctgggatcagctgttactcaacagcagacaaggtttccagta
acgttcagttccaacatgaagacggacctctgcccactaactaggattggccaagatgat
ctgccaggatatgatctgatttcacagttccagcttgataaagctgcttccagaggcatc
attcagcgagtggtgggttctacagatttacaagtggcttacaaattaggcacaaatgta
gacttcaggattccaacgaggtctttatatccaaatggactacctgatgagtattctatt
ctaactacttttcggatgactggaaatactcttcagaaatactggagcatatggcaggtt
ctggactcttctggaaaagaacaagttggactgaagcttaatggacaagccatgtctctt
gaatactcctataaaagaactgatggaactctccagacagtgacatttttggatttacca
catctgtttgattctcagtggcacaaggttatgattggtatagagaagagtgctgtcacc
ctttatattgactgcattatgatccaaaccttaaccatagagccaaggggaaaaatcaat
gttgatggctttactgtgctgggaaaactgaaaaataatcctcagatttcagttccgttc
gagatccagtggatgttgattcattgtgaccctctacgaccccaaagagaaacttgcagt
gaacttacagcccggagttcgataagccagacagccaccaagagaggccccccaggtcca
caaggccctccaggccccccaggccccccaggagttcctggcattgatggcatagacgga
gacagaggtcctaatggccccactggccctccgggtccagatggtgaaccaggtaaacca
ggtgtccccggattgccaggagtaccgggagctgatggattgacaggccctgacgggtct
gtaggtccaactggtccaaaaggacaaaagggtgaacctggattgcctggaggccgtgga
cttcctggcaaagggattcctggatctcctgggcctcctggcatagcaggacttcctgga
gaagtgggaagagttgggccttctggagatcctggaaggagaggccctccaggagtacca
ggccctccaggtcccaggggaacagttgggcttcgtgatggagatccgctgtgtcccaac
gcttgtcctccaggtcgacctgggcatgctgggctaatgggcatgaagggtcacaaagga
gtgagaggggatgatggtgaaccaggaaaacaaggccacaagggagaagaaggtgaacaa
ggaggaataggcgatgttggagcttcaggccctccaggacctccaggattaagaggaata
actggaatattgggacccaaaggtgataaaggtgctcggggtcttgatggagagtctggt
cctcgaggtcttccgggggcacctggcgatcaagggcaaagaggtgccctgggagagact
ggtcccaaaggagagagaggtcctcaaggtattagaggaattactggccttcctgggcct
aaaggagaatcgggcttaccaggagttgatggccgtgaagggatcccaggcatgccagga
tcaaagggtgaaccaggaaaaccaggtcctccaggtgatgcaggagttcaaggactgcca
ggttttcctggctctccaggggcaaaaggtgttgctggctcaaagggtaacgtgggtcct
cctgggatacctggcttgatggggaattcgggtaaacctggagaccaaggcccacaggga
gtagaaggaccaattggacccagaggccccccgggtggcagaggtgagccaggtcctgct
ggtcctcccggtcttcctggtaaaatgggtgccgagggtgacataggcctcccaggttta
cctgggcctccaggactgccaggcgctcaaggtgacaggggttcagttggtgaaccgggg
ccaaaaggagatcaaggtgctgctggtggagaaggagagccaggaggaagaggcgacctt
ggtgacatgggtttgccaggccctaaaggatctgttgggaatcctggtgaatctgggtca
cgtgggcctgaaggcagtcgtggcttacctggtgtagaaggattacgtgggccaccaggg
ccccgtggtttgcaaggcgagcaaggtgcgacaggtctgcctggcagccaaggcccagct
ggtagagagccatctgatgcacacattaaacaggtttgcatgagagtaatgcaagaacaa
ctggctcagctggcggctagccttcggaggcctgaatttggcgctccaggcctcccgggc
cgccctggcccacctggtgtccctggatctcctggagaaaatggctttccagggcaactc
ggatctcgggggctgcctggccttaaaggccctcctggtgatattgggttgaaaggcccc
aaaggtgaaactggtgaaaagggggagagaggattcccaggccgagggcccaaaggctta
ccaggaacaacagggctaccaggagaaccaggcaagcccagctatggcacagagggacga
gatggtgatcgaggcccacctggaacagctggcctacctggcgttcctggccctcctggt
cctcccggcccccctggttattgtgagccatcagcctgcactgtgcaagctggcctacga
gttgacaagaatgtaaaagggccatga
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