Hemicordylus capensis (graceful crag lizard): 128341200
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Entry
128341200 CDS
T08891
Symbol
BARD1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128341200 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128341200 (BARD1)
04121 Ubiquitin system [BR:
hcg04121
]
128341200 (BARD1)
03036 Chromosome and associated proteins [BR:
hcg03036
]
128341200 (BARD1)
03400 DNA repair and recombination proteins [BR:
hcg03400
]
128341200 (BARD1)
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
128341200 (BARD1)
Ubiquitin system [BR:
hcg04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
128341200 (BARD1)
Chromosome and associated proteins [BR:
hcg03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
128341200 (BARD1)
DNA repair and recombination proteins [BR:
hcg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
128341200 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_6
Ank
Ank_4
Ank_2
Ank_5
Ank_3
BRCT
BRCT_2
zf-RING_5
ANK_LRRK2
zf-C3HC4
PTCB-BRCT
RTT107_BRCT_5
RNF111_N
zf-C3HC4_4
zf-RING_10
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
128341200
NCBI-ProteinID:
XP_053143395
LinkDB
All DBs
Position
1:234176778..234257328
Genome browser
AA seq
788 aa
AA seq
DB search
MRPTAMRVRSGNEPAERMEPPPECPWTETRKALGRLQETLSCSRCCGILKKPVNLGGCEH
VFCLTCVGDCVGRACPVCHTPAMVQDVKVNRQLDNIIKLYNKLQNLQGTDFSGSVDDLSI
PGEVVCEAETKKQIKMWFSPRSGKMRFVLKRRPKKPQQAVTSKDSKPHDPTSAYDFFPSP
PHEKLLTEAKKSQPKCKKKPRKKTLTDINQQWGLVMGSQKNTTCGHEKESSGQTKEKLVS
FCSQPLVIPSPNPESTSRDKSVMKMKLAWNESELDMGVIVCGKPTEKNSNDNLPYTCDIS
EENPTSEECLLSGGEMSLLKRGRQQTGSPTSLSKRSRRKEQSPSGDSFHSDILPKQASEE
SRNKTSPTTDCISSSPSTLIASALLTQRNPEDFQSARSPILPETPPISSNPARKEAQQVV
PFSNKSPHNLSAKRNRKGETLLHVASIEGNLPAVEHLLKSGADPNVKDYAGWTPLHEACH
HGHKEAVELLLQHGALLNATGYQNDVPLHDAVKNGHTRIVELLLLRGASRDAVNIFGQRP
MDYAETEEMKSLLMLPVKNESSSITQCAEQINLNNPRDGPIVLLGSGLDPIQQQLLSKLA
AVLKAKICTTFNSAVTHVVIPEYPVRSTMKCMLAVLTGCWILTLKWVEACLQTGAREQEE
KYEIDGGPQRGRLNKEQLLPKLFDGCYFYFLGTFKEHNKDGLKELVKTGGGQILARKPKS
DNDVTQTINTIAYHAEINSDQSFCTQYIIYDGSSSYNPEKIRQGKVWEVPAKWLIDCVVS
FQLLPVKK
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcccactgctatgcgggtgcgctccgggaacgagcccgctgagcggatggagccg
cctcctgaatgtccgtggacggagacgcggaaggctttggggcggctgcaggagacactc
agctgctcccgatgctgtggcattctgaagaaacctgtgaatctaggaggttgtgaacat
gttttctgtctaacgtgtgtgggtgactgtgttggtagggcgtgtccagtgtgtcacacg
ccagccatggtccaagatgtgaaagtaaacaggcagctggacaacataatcaaactgtat
aacaaactgcagaatctacagggcacagacttctcaggttcggtagatgacctgtctata
ccaggagaggtagtttgtgaggcagaaactaagaagcaaataaaaatgtggttcagtcct
cgcagtgggaagatgagatttgtcctaaagagaaggccaaagaagccacaacaggcagtg
acaagcaaggatagcaagcctcatgacccaacatctgcttatgacttcttcccctcccct
cctcatgaaaagctgttgacagaggctaagaaatcccaaccaaagtgtaagaaaaagcca
aggaagaagaccttaacagacatcaaccaacaatggggattggtcatgggaagtcagaaa
aacaccacctgtggacatgagaaggagagctcaggtcaaaccaaagaaaagctggtgtca
ttttgcagccaaccattagtgatccccagtccaaatccagagagcacatccagggataag
tctgtaatgaagatgaagcttgcatggaatgaaagtgaacttgatatgggtgttattgta
tgtggaaaacccactgagaagaacagcaatgataatctgccttatacatgtgatatctct
gaggagaacccaacttctgaagagtgcctcctctctggtggggaaatgtctctgctgaag
cgtgggaggcaacaaactgggtctcctacttctttatctaaacgttccagaaggaaagag
cagagccccagtggggactccttccacagtgatattctcccaaagcaagcatcagaagag
tcccgtaataaaacgtctcccactactgactgcataagttcttctccatctacattaatc
gccagtgccttattaacacaaaggaaccctgaggacttccagagtgcaagaagccccata
ctgccagaaacaccacctatatccagtaatcctgctcgaaaagaggcacagcaagttgtg
cctttctctaacaaatctccccataacttgtcagccaagagaaatcgtaaaggggagacg
ttactccacgttgcttccattgaggggaaccttcctgctgttgaacatttactgaaaagc
ggagcagaccccaatgttaaagactatgctggatggacaccgttgcatgaagcttgtcat
catggacataaggaggccgtagagctgttgttgcaacatggagcacttttgaatgcgact
ggatatcaaaatgatgtgccacttcatgatgctgtcaagaatgggcatacaaggattgtt
gaattgttgctcttacgtggagcttctcgagatgcagttaatatattcggtcagagaccc
atggattatgctgaaacagaagagatgaagtcacttttaatgctaccagtgaagaatgaa
tcctcttcaattactcagtgtgcagaacaaataaacctaaataatcctagagatgggccc
attgtccttcttggaagtggtcttgatcctattcagcaacagttgttgagcaaactggcc
gcagttctgaaggctaaaatatgtacaacattcaacagtgcagtgacacatgttgtaatc
cccgagtatcctgtgcgaagtactatgaagtgcatgctggcagttttgactgggtgttgg
atcttgacattgaagtgggtagaggcatgtctgcaaacgggagctagggagcaagaagag
aagtatgaaatagacggtgggccacaaagaggtcggctgaacaaagaacagctgttgccg
aagttatttgatggctgctacttctattttctgggaacatttaaggagcacaataaagat
ggcctcaaagaactggttaaaactggagggggtcagatccttgcaaggaaacccaaatcg
gataatgatgtgacacagacaatcaacaccatagcatatcatgctgagattaattctgac
cagagtttctgcacacagtatataatctatgatggatcttcaagctacaacccagaaaaa
atccgtcaagggaaagtttgggaggtgccagctaagtggcttatagactgtgtggtatca
tttcagctcttacctgttaagaaatga
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