Hemicordylus capensis (graceful crag lizard): 128341742
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Entry
128341742 CDS
T08891
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128341742 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128341742 (MTREX)
03041 Spliceosome [BR:
hcg03041
]
128341742 (MTREX)
03009 Ribosome biogenesis [BR:
hcg03009
]
128341742 (MTREX)
03016 Transfer RNA biogenesis [BR:
hcg03016
]
128341742 (MTREX)
Enzymes [BR:
hcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128341742 (MTREX)
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
128341742 (MTREX)
Spliceosome [BR:
hcg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
128341742 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
128341742 (MTREX)
Ribosome biogenesis [BR:
hcg03009
]
Eukaryotic type
Pre-60S particles
Helicases
128341742 (MTREX)
Transfer RNA biogenesis [BR:
hcg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
128341742 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
128341742
NCBI-ProteinID:
XP_053144202
LinkDB
All DBs
Position
2:35809995..35885121
Genome browser
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEEDPASAAAATSGSKKTKGATATAAAGKAGKRSDGKSTASAKLPEKT
KRDAEVDSADIAMYEKKPKLEDFTTDFLNLSDLMPKVKVQSVETVEGCTHEVALPADEDF
IALKPRTGKAAKEYPFILDAFQRESILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKRMVEE
VFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPAVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVNKLEQQYNEIEIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEDEDFGWGVVVNFSKKSNVKPNSGELDPLYVAEVLLHCNKESLKNSATEAAKPAKPDE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRHLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIKDPGLKKVIQKIEAFEHRMYSHPLHNDSNLETVYKLCERKAQIAVDIKAANRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSF
RPNLMDVVYTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggcgacgagctcttcagtgtgtttgaggaagatcccgcttcagcc
gcggccgccacctcaggctcgaagaaaacgaagggagcgactgcgaccgctgctgcgggg
aaggctgggaaacgatcagatggcaaatctacagcatctgctaaacttccagaaaaaacc
aagcgagatgcagaggttgatagtgcagacattgcaatgtatgaaaagaagccaaagttg
gaagatttcaccacagactttctcaatttgtctgacctcatgccaaaagtaaaggttcag
tctgttgaaactgtcgaaggctgtacacacgaggttgctcttccagcagatgaagacttt
atagctttaaagccaagaactgggaaagctgcaaaggaatatccattcattcttgatgct
tttcaaagagaatctattctctgtgtggataacaatcagtcagttttagtgtccgctcat
acatcagcagggaaaacagtgtgtgcagagtatgccattgccttagctttgagggaaaaa
cagcgtgtgatatttaccagtcctattaaagctcttagcaaccaaaaatatcgtgagatg
tatgaagaatttcaagatgttggtttgatgactggggatgttacgatcaatcctacagca
tcttgtcttgtgatgacaacagagattttgaggagtatgctttacagaggttctgaggtc
atgagagaagttgcttgggtcatatttgatgaaattcattacatgagagattcagaacgt
ggtgtggtatgggaagaaaccattattttactcccagacaatgtccactatgtgtttctt
tctgctacgattccaaatgctcgccagtttgctgaatggatctgccatcttcataaacag
ccttgccatgtgatatacacagattatcgacccactcctctgcaacattatatcttccca
gcagggggagatggactccacctcgtggttgatgaaaacggcgattttagggaggataat
tttaatacagctatgcaggtactcagagatgcaggtgacttagctaaaggggaccaaaaa
ggcaggaaaggaggaacaaaaggtccatcaaatgtgtttaagattgtaaagatgatcatg
gaaagaaatttccaacctgtaattatattcagcttcagtaagaaagattgtgaagcgtat
gctcttcagatgacgaaactggacttcaacacagatgaagaaaaaaggatggtggaagaa
gtatttaacaatgcaattgactgtttgtctgatgaagacaaaaagctgcctcaagttgag
catgttcttcctcttctgaagcgaggcattggaatccaccatgggggattgcttcccatt
ttaaaggaaactatagaaattcttttctctgaagggctgataaaggccttatttgcaacg
gagacttttgctatgggcattaacatgccagcaaggacggtgctgttcacaagtgccagg
aagtttgatgggaaagatttcagatggatatcctcgggtgaatacattcagatgtctggt
cgtgctggacgtcgaggcatggatgacaggggaatagttattcttatggtggatgagaag
atgagcccagcagttggaaaacagcttctcaagggatctgctgaccctctaaatagtgct
ttccatttgacatacaacatggtattaaatttgctgcgtgtggaagaaattaaccccgaa
tacatgttagaaaaatctttttaccagtttcaacattatagagctattccaggagtagtt
gaaaaggtaaataagttggaacagcagtacaatgagattgaaattccaaatgaggaaagt
gtggtcatctattataaaatcagacaacaacttgctaaactgggtaaagaaatagaagag
tacattcacaagccaaagtactgcttgccattcttacaaccaggcaggctggtgaaagtg
aaaaatgaagatgaagactttggctggggtgtggtggtaaatttctccaagaaatctaat
gttaagccaaactctggtgaactggaccccctttatgttgctgaagtcctgctgcactgt
aataaggagagcctgaaaaattctgctacagaggctgcaaagccagcaaaacctgatgag
aaaggggagatgcaggttgttcctgttttggtgcatcttctgtcagcaataagcagtgtt
cgtctttatatacccaaagacctgagacatcttgataatagacagagcgtattgaagtcc
atacaggaagtgcaaaaacgtttccctgatggagttcctttgctggatccaattgatgat
atgggcatcaaagatccaggcctaaaaaaggtaatccaaaaaatagaagcatttgaacat
cggatgtattctcacccacttcacaatgattcaaatttggaaacggtgtacaaactttgc
gaaagaaaagcacagattgctgtcgatattaaagcagcaaaccgagaactgaagaaagcc
aggactgttctacaaatggatgagctcaagtgtcgtaaacgcgttttgagaaggttgggt
tttgcaacctcttcagatgtcatagagatgaaagggcgagttgcttgtgaaatcagcagt
gcggatgaactgttgctgacagaaatgatgttcaatgggctcttcaatgacttgtctgca
gagcaagcaactgctttattaagctgctttgtatttcaagaaaattccagtgaaatgccc
aaattaacagaacaattggcaggtcctctccgccaaatgcaggaatgtgcaaaaagaatt
gctaaagtatcagcagaagctaaattggaaattgatgaagaaaattacctcaattccttt
aggccaaacttgatggatgtggtgtacacgtgggccaatggtgctacatttgctcacata
tgcaaaatgacagatgtctttgaagggagcataattcgctgtatgagacggcttgaagaa
ttgcttcgccagatgtgccaagcagcaaaggccattggaaacacagaactggaaaacaaa
tttgcagaaggcattactaaaatcaagagagacattgtgtttgccgcaagcctttaccta
taa
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