Hemicordylus capensis (graceful crag lizard): 128344090
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Entry
128344090 CDS
T08891
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128344090 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hcg03041
]
128344090 (DDX46)
Enzymes [BR:
hcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128344090 (DDX46)
Spliceosome [BR:
hcg03041
]
Complex A
U2 snRNP components
U2 related factors
128344090 (DDX46)
Complex B
128344090 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
128344090
NCBI-ProteinID:
XP_053149549
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All DBs
Position
2:complement(349999194..350083996)
Genome browser
AA seq
1051 aa
AA seq
DB search
MGRESRSTKQQLSKQKQHYRKRSSSRGRSGSRSRSRSPSDKRAKRGDDRRSRSRDRDRRR
ERSRSRDKRRSRSRDRKRVRRSRSRERERSRERRPRSRSRERRRSRSRSRGRRSRSSSPG
KNKKVENRSRSKEKVEGVEVNKEKKKEKEDKEEEKDKDVNNFDQNKLEEEMRKRKERVEK
WREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDDEETAEGEKEGNEIEDEELDPLD
AYMEEVKEEVKKFNMRSVKGGGGSEKKSGPTVTKVVTVVKTKKASPETEKKKGELMVNDQ
DAMEYSSEEEEVDLQTALTGYQTKHRKLLEPVDHGKIEYESYRKNFYVEVPELAKMNQEE
VNAYRLEMEGITVKGKGCPKPIKTWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSG
RDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEEGEGPIAVIMTPTRELALQITKECKKFS
KTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLD
EADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVV
CSDVEQNVIVIEEENKFLKLLELLGHYQEKGAVIIFVDKQEHADGLLKDLMRASYPCLSL
HGGIDQYDRDSIINDFKSGVCKLLVATSVAARGLDVKHLMLVVNYSCPNHYEDYVHRAGR
TGRAGNKGYAYTFITEDQVRYAGDIIKALELSGTPVPPELEKLWNDFKDQQKAEGKTIKK
SSGFSGKGFKFDETEEALANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKD
MAAPGGTSHVPAPTAGNAEKLEIAKRLALRINAQKNLGAEAQVLVSFQFKDVMQQATNAI
LRGGTIQAPTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQEGGQNESFKRYEEELEIND
FPQTARWKVTSKEALHRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQK
AKAEITRLIKEELIRLQNSYQPTNKGRYKVL
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgggccgagagtccagatcaacaaagcaacagttatccaaacaaaaacagcattatcgg
aagcgctcctcatcacgagggcgctctggaagtcgttctagaagtcgttctccatcagac
aaaagagcaaaacgtggagatgatagacggtctagaagtagggacagagatcgaagacgt
gaaagatcacgcagcagagacaagaggagatctcggtcacgtgacaggaagcgtgtgagg
cgttcaagaagtagagagagggagcggagtagagagaggaggcctcgctcacgcagtcgg
gagaggagaagatccagaagtcgcagtagagggagacgttcccgatcttccagccctggc
aagaacaagaaagtggaaaatagatcacgatctaaagaaaaagtggaaggtgttgaagtt
aacaaggaaaagaaaaaagagaaagaagacaaagaagaagaaaaagataaagatgttaat
aattttgatcagaacaaattagaagaggagatgagaaaacgaaaagagagagtggagaaa
tggagagaagaacagcgtaagaaagctatggaaaatataggagaattgaagaaagaaatt
gaagagatgaaacaggggaagaaatggagcttagaagatgatgatgatgatgatgaggaa
accgcagaaggggaaaaagaaggtaatgagattgaagatgaagaactggatccgctagat
gcatatatggaagaagtcaaagaagaagttaagaaatttaatatgaggagtgtaaaaggt
ggaggtggaagtgaaaagaaatctgggccaacagttactaaggtagtaactgtagtgaaa
accaaaaaagcatctccagagacagaaaagaaaaaaggagagctgatggtcaatgaccag
gatgcaatggagtattcttctgaagaggaggaagttgatctccaaacagcattgacaggt
tatcagaccaaacacaggaaactgcttgaacccgtggatcatgggaagattgaatatgag
tcctataggaagaacttctatgttgaagttccagagctagctaaaatgaatcaagaagag
gtgaatgcatataggctggaaatggagggaattactgtcaagggtaaaggatgccccaag
ccaatcaaaacctgggtgcagtgtggtatctctatgaaaattctgaattccctgaaaaag
catggctatgaaaagcccacccccatccaaacccaagctatacctgcaattatgagtggg
cgtgatttgattggcattgctaaaacaggaagtggaaagaccattgcttttctgttgccc
atgttcagacacatcatggatcagaggccattggaagaaggagagggcccaatagctgtc
attatgacacctactcgagagctggccttgcagattacaaaggagtgcaagaagttctca
aaaacacttggacttagagttgtgtgtgtatatggaggaacaggaataagtgaacagatt
gctgaactgaaaaggggtgcagaaatcatcgtttgcacacctggccgtatgattgatatg
ttggcagctaataatggtcgggtgacaaatcttcgaagagttacttatgttgtccttgat
gaagctgacagaatgtttgacatgggctttgagcctcaggtaatgcgcattgtagacaat
gtaagacctgatcgacagactgttatgttctctgctaccttccctagagccatggaggct
ttagcacgtcgaatattaagtaaaccaattgaggtccaggttggtggcaggagtgttgtc
tgttctgatgtggaacagaatgtgattgtgatagaggaagagaacaagttcttgaagttg
cttgaactactgggacattatcaggaaaaaggagctgtcattatatttgttgataaacaa
gaacatgctgatggattgctgaaagacttaatgagagcctcttatccctgcttgtcactt
catggaggtattgatcagtatgacagagacagcataatcaatgattttaagagcggagta
tgtaaacttcttgtggccacatctgtagcagctcgaggtcttgatgtaaaacatcttatg
ctggtagtcaactacagctgtcccaatcattacgaggattatgtgcacagagcgggcagg
actggccgagcaggcaacaaaggatatgcgtatactttcattactgaagatcaggtgcgg
tatgctggtgacataatcaaagctttggagctgtcaggtactccagttcctcctgagctg
gagaagctttggaatgatttcaaagatcaacagaaagctgaagggaagacaataaaaaag
agtagtgggttctctggcaaaggattcaagtttgatgaaacggaggaggctttggctaat
gagcgaaagaaactacaaaaagcagcacttggcttgcaggattcggatgatgaagataca
gcagttgatattgatgaacagattgaaagcatgttcaattcaaagaaaagagtaaaggac
atggcagcacctggcggaacatctcatgttcctgccccaacagctggaaatgcagaaaaa
ttagagattgctaagagattggcattgagaatcaatgcacagaagaatctcggagccgag
gcacaagtattggtctcttttcaatttaaggatgtgatgcaacaagctacaaatgctatc
ctgagaggtggtacaattcaggctccaactgtatctgctaaaaccattgcagagcaactg
gctgaaaaaatcaatgccaagctcaattacgtgcctatagagaagcaagaggaggagaaa
caggaggggggacaaaatgaatcttttaagagatacgaggaagaactggagatcaatgat
ttcccacagaccgctaggtggaaagtaacatcgaaagaagcactgcacagaataagtgaa
tattctgaagctgccattacaattagaggaacatattttcctccaggcaaagagcccaag
gagggagaacgaaaaatttacttggctatagagagtgccaatgaactggctgtgcagaaa
gcaaaggcagaaattactaggcttatcaaggaagagctcatcagattgcaaaattcatac
caaccaaccaacaaaggaagatacaaagttttataa
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