Hemicordylus capensis (graceful crag lizard): 128344448
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Entry
128344448 CDS
T08891
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128344448 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128344448 (PNLDC1)
Enzymes [BR:
hcg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
128344448 (PNLDC1)
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128344448 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
128344448
NCBI-ProteinID:
XP_053150541
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All DBs
Position
1:368360825..368419909
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AA seq
526 aa
AA seq
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MDVGVAEFEERLPRLQELILDCDFVSLDMEFTGLHSISPPTGQPSLFDSPAEWYRKAKQS
VQQFTVSQFGLSVFSSENSNKYMSHSYNFFLFPATFGGMDSEFSFQASSIQFLTHYGFDY
NKFLKDGVPYLNETQEKKLQQHILSGNWNAHSSIDRDKLKKVIDEVTFWVSFAEEEDSMV
LHDIHGFQMLEVQLVLRQALQDIWTVPLGVKEVMVKKINPRNRWLLEKTSYDSCQREQIL
LSARGFTNLFQTLIKAKKLLVGHNMLMDLLHLHDKFYKPLPENYEEFKKNIHSLFPLLLD
TKNIAKVTWKEFQFPQASNLLEVFEMLCSDLNPTNSSSPEICHASDCLRYAENKCPHEAA
YDAFLCGSVLLKIAHLHFCRMSCDPARSSPSFAQYLDVLAAYVNQVNLIRAGIQKINFSG
KDEPTRRPPLLIATVRGWPGVDEQQIYQELRIFCRFDVRRLGMNQFLLVSNKFKDVRVIQ
KTYQAHPNLQISLYRYWRHSPQVNCFFQICGIVASWSFLAFLLGAL
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgggtgtagcggagtttgaggaaaggttgcccaggctgcaggaactcatcctt
gattgcgactttgtcagcctagatatggaatttacaggtctgcattctatctctccacca
acaggacagcccagcctctttgactcccctgccgagtggtatcggaaagccaagcagagt
gtccaacagtttacagtgagtcagtttgggttatctgtgttttccagtgaaaactcaaac
aagtatatgtcacattcgtataactttttcctcttccctgcaaccttcggcggaatggat
tctgagttctctttccaagcatctagcattcagttcctgactcattatggttttgactac
aacaagtttcttaaggatggggtcccatacctgaatgaaacacaggagaagaaacttcag
caacatattctgtctggtaactggaatgcccatagtagtatcgacagggacaagctgaaa
aaggtgattgatgaagtaacgttctgggtgtcctttgcagaagaggaagattcaatggtt
ttgcatgatatacatggcttccagatgttggaagtacagctggttctaagacaagctctc
caagacatttggacagtccctttgggagttaaagaagtaatggtgaagaagattaaccca
cggaatcgctggctactagagaaaacttcttacgattcttgccaaagagagcaaattctt
ctctctgcaaggggcttcaccaacctcttccagacacttattaaagcaaagaagctgctg
gtaggccacaatatgctgatggatcttctacatctacatgacaaattttacaaacctctt
cctgaaaactatgaggagtttaaaaagaacatacactctctctttcctctcctcctggac
acaaagaacatagcaaaagtcacctggaaggagtttcagtttcctcaggcttctaatctt
ttggaggtttttgaaatgttgtgcagtgacctgaatcccacaaactcatcttctccagag
atttgtcatgcaagtgactgcctcagatatgctgaaaacaagtgtccccatgaggcagcc
tatgatgcatttctctgcggatcagttcttctgaaaatagcccatctacacttttgcaga
atgtcttgtgatccagcaagaagttccccttcttttgctcagtatcttgatgtattggct
gcgtatgtgaaccaggtgaaccttatccgagctggtattcaaaaaattaacttttctggc
aaggatgagcccacaagacgtccgccactcctgatagcaactgtacgaggatggcctggt
gtggatgaacagcagatctaccaggagttaagaatcttctgtagatttgatgtgcgacgg
ctaggaatgaaccagtttctcttggtctccaataaatttaaagatgtcagggtgattcag
aaaacctatcaagctcatcccaatcttcagatttctctgtatcgctactggaggcattcg
ccacaagtgaactgcttttttcaaatttgtgggattgtggcctcttggtctttcctggct
ttcttgcttggagctctgtga
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