Hemicordylus capensis (graceful crag lizard): 128344790
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Entry
128344790 CDS
T08891
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128344790 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128344790 (XAB2)
03041 Spliceosome [BR:
hcg03041
]
128344790 (XAB2)
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128344790 (XAB2)
Spliceosome [BR:
hcg03041
]
Complex B
Other components
Prp19-related factors
128344790 (XAB2)
Complex C
128344790 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_2
Suf
TPR_12
TPR_19
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
RPN7
TPR_1
NRDE-2
TPR_16
CKAP2_C
LTN1_E3_ligase_6th
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
128344790
NCBI-ProteinID:
XP_053151646
LinkDB
All DBs
Position
2:380007973..380029318
Genome browser
AA seq
852 aa
AA seq
DB search
MPELETVLGKRELFFEEEDLQYEEEILRNPFSVKCWIRYIEFKQSAPKHVLNLIYERALK
ELPGSYKLWYNYLKQRRKQVKSKCVTDPTYEEVNNCHERALVFMHKMPRIWLDYCQFLMD
QYRITRTRRTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSPENAEE
YIEYLHSIDRLDEAAVRLAAVVNDERFVSKEGKSNYQLWHELCDLISQNPDKVKSLNVGA
IIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQF
EESMIAAKMETTSEMGREEEDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHK
RVKLYEGKPREIINTYTEAVQTVDPFKATGKSHTLWVSFAKFYEVNGQIEDARTIFEKAT
KVNFKQVDELASVWCEYGEMELRHENYDQALRILRKATAIPAKKAEYFDSSEPVQNRVYK
SLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIIINYGLFLEEHSYFEESFKAYE
RGISLFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKYAKTIYLLYAKL
EEEYGLARHAMAVYERATQAVQPSEQYDMYNIYIKRAAEIYGVTHTRSIYEKAIEVLSDE
HAREMCLRFADMECKLGEIDRARAIYSYCSQICDPRTTANFWQTWKEFEIRHGNEDTIRE
MLRIKRSVQATYNTQVNFMASQMLKVYSNATGTVSDLAPGQSGMDDMKLLEQRAEQLAAE
AERDQPKAKEKILFVRSDASRSELAELSRQANPDEIDIDLDDGDESEDNEPDEVQLEQKS
VPSAVFGGLKDD
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgccagagctggaaacggtgttggggaaacgcgagctgttctttgaagaagaagatctg
cagtatgaggaagagatcttgcgcaatcctttctctgtcaagtgctggattcgctacatt
gagttcaaacagagtgctcccaagcatgtcctgaacctgatctacgagagagctctcaag
gagttgccgggcagctacaagctatggtataattaccttaagcagcgacggaaacaggtg
aagagcaagtgtgtaacagaccccacctacgaagaggtgaacaactgtcatgagcgtgcc
cttgtcttcatgcacaagatgcctcggatatggctagattactgccagttcctcatggac
cagtatcggatcacccgcacacgcaggacgtttgatcgggcactccgggccctgcccatc
acacagcaccatcgcatctggccactctacctgaagtttgtgcgcctgtatccattacct
gagacagctgtacgggtctaccgcaggtacctgaagctgagcccagagaatgccgaggaa
tatattgagtacctgcactccattgatcggctcgatgaggctgccgtccgtcttgctgct
gtggtgaatgatgagcgctttgtctccaaggaagggaaatccaactatcagctgtggcac
gagctctgtgacctcatctcgcagaatccagacaaagtgaagtctctcaacgtgggggcc
atcatccggggtggcctgacccgtttcactgaccagctgggcaagctttggtgttccttg
gcagactactatattcgcagtgggcattttgagaaggctcgagatgtgtatgaagaagcg
atccagacagtgatgaccgtgcgggatttcactcaggtgtttgacagctacgcccagttt
gaggaaagtatgatcgccgcaaagatggagacaacatctgagatggggcgtgaggaagag
gatgacgtggacctggaactgcgcctggctcgcttcgagcagctgatcacacgccgacct
ctcctcctcaacagtgtcctcctgcgccagaatcctcacaatgtccatgaatggcacaaa
cgggtgaagctgtacgaagggaaaccccgagagatcatcaacacatacacagaagctgtg
cagactgtcgatcctttcaaagccactggaaagtcacacacgctgtgggtttcttttgcc
aagttctacgaggtcaatggacagatagaagatgccagaaccatttttgaaaaggccacc
aaggtgaacttcaagcaagtagatgaattggccagcgtgtggtgcgagtatggcgagatg
gagttgcggcatgagaactatgaccaggcactgcgtatcctgcgaaaagccacagccatc
ccagcaaagaaggcagagtactttgattcctcagaacctgttcagaatcgtgtatacaag
tccctcaaggtttggtccatgttggctgatctggaggaaagtctaggcaccttcaagtct
acgaaagctgtgtatgaccgtattctggacctgcgcattgccactcctcaaatcattatt
aactatggcctcttcctagaagagcacagctactttgaggagagcttcaaggcctatgaa
aggggcatctccttgttcaagtggccaaatgtgtatgacatctggaacacctacctaacc
aaattcattgaccgttatggtggcaagaaacttgagcgtgctcgggatctgtttgaacaa
gctctggatggctgtccccagaagtacgctaaaaccatctacttgctgtatgccaagctg
gaggaggaatatgggctggcacgccatgccatggcagtgtatgagcgggccactcaggct
gtacagccttcagagcagtatgacatgtacaatatctacatcaagagggcagctgaaatc
tatggagtcacccacacccgtagcatctacgaaaaggctattgaggtgctgtcggatgag
catgcccgggagatgtgcttgcgctttgcggacatggagtgcaagcttggtgaaattgat
cgtgctcgggccatctactcctactgttcacaaatatgtgacccccggaccactgccaac
ttctggcaaacatggaaggagtttgagatccggcatgggaatgaagatactatccgggag
atgctgcgcatcaaacgaagtgtacaggctacctacaatacccaggtcaactttatggca
tcccagatgctgaaagtttacagcaatgccacaggcacagtgtctgacttagcacctggg
cagagtggcatggatgacatgaagctcttagagcagcgggcagagcagctggcagctgaa
gcggaacgtgatcagcccaaagcaaaggagaagatcctgtttgtcaggagtgatgcttcc
cgcagtgagttggctgaactgtccaggcaggccaaccctgacgagatagacattgacttg
gatgatggcgatgagagtgaggataatgagcctgatgaagtacagctggagcagaagagt
gtcccttctgccgtgtttgggggccttaaggatgactga
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