Hemicordylus capensis (graceful crag lizard): 128345306
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Entry
128345306 CDS
T08891
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03013
Nucleocytoplasmic transport
hcg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128345306 (UPF1)
03015 mRNA surveillance pathway
128345306 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128345306 (UPF1)
Enzymes [BR:
hcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128345306 (UPF1)
5.6.2.5 RNA 5'-3' helicase
128345306 (UPF1)
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128345306 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
128345306 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
128345306
NCBI-ProteinID:
XP_053153081
LinkDB
All DBs
Position
2:complement(212796113..212825438)
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AA seq
1135 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGAGAAAAGAGP
GGSSAAGQGNPAAPGGGGAGGLPSAVGPGQLDAQINGPDGILQNGALDDSVAKTSQLLAE
LNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVR
AKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDI
NWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEK
PGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRI
AYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAP
VEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKR
FTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP
SNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKD
ETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQAT
EPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQY
RMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQLDKPMFFYVTQGQEEIASSGT
SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVE
IASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQ
PLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAII
PGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQAN
GPAAGRGNPKGKTSRGGRQKSRFGMPGASQSNLPNSQASQDVVSQPFSQGPLTQGYISMS
QPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcgcagacgctgaccttcctggacacggaggag
gccgagctgctgggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagacgccgcccggaggagccggcgccgccgcagcaggagcgggcccc
ggcggcagcagcgccgccgggcagggcaaccccgccgcgcccggaggaggaggagccgga
gggctgccctcggccgtggggcccggacagctcgatgcccagatcaacggacctgatggc
atccttcagaatggggccctggatgacagcgtggccaaaaccagccagctcctggcagaa
ctcaactttgaggaggacgaggaagacacctactacaccaaggaccttcctgtgcatgcc
tgcagctattgcggcatccacgacccagcgtgtgtggtctactgtaacaccagcaagaag
tggttctgcaatggacgtgggaatacatctggcagccacattgtgaatcatcttgtgaga
gccaaatgcaaggaagtgactcttcacaaggacgggcccctgggagaaactgtcttggag
tgttacaactgcggctgccgtaacgtcttcctcctgggcttcattccagccaaggctgac
tcggtggtcgtcttgctgtgcaggcagccttgcgctagccagagcagcttaaaggatatc
aactgggacagctctcagtggcagcctttgatccaagaccgctgcttcctctcctggctg
gtcaaaattccttcggagcaggaacagctgagagcacggcagatcacggcgcagcaaatc
aacaagctggaagaactctggaaggagaacccgtccgccaccctggaggacttggagaag
cccggcgtcgatgaagagccgcagcacgtcctgctccggtacgaggatgcctatcagtac
caaaacatctttgggccgctggtcaagctcgaggcggactacgacaagaagctgaaggag
tcccagacccaagacaacatcaccgtgagatgggacctgggcttgaacaagaagaggatc
gcttacttcactctgccaaagactgattcagatatgcggctgatgcagggcgatgaaatc
tgcctgaggtacaaaggagatctggccccactgtggaaaggaatcggccatgtcattaag
gttcctgacaattatggcgacgagatagccatcgagttgcggagcagcgttggtgccccg
gtggaggtgacccacaacttccaggtggactttgtgtggaagtcgacctccttcgacaga
atgcagagtgccctcaagacgtttgctgtggacgaaacctctgtttctggctacatctat
cacaagctcctgggtcacgaagtggaagacgtcattatcaaatgtcagctgccgaagcgc
ttcacagcacaaggacttcctgacctcaaccactctcaggtatatgctgtgaagactgtc
ttgcagcgccccttgagcctcatccagggcccccccgggacagggaagacggtcacatct
gctaccattgtgtaccacctggccaggcagggcaatgggcctgtgctggtttgtgccccg
agtaacatagccgtggaccagctgaccgagaagatccatcagacgggcctgaaagtggtg
cgcttgtgtgcgaagagccgcgaggcgattgactcccccgtgtctttcctggcactgcac
aaccagatcagaaacatggacagcatgcctgagctccagaaactgcagcagctgaaagac
gagactggagagctgtcatctgcagacgagaagcgctatcgggccctgaaacggacggct
gaacgggaattgctcatgaacgcggatgtcatctgctgcacctgtgtgggagccggtgac
ccccggctggcgaaaatgcagttccgctccattctgattgatgagagcacccaggccacc
gagccagaatgcatggtgcccgtggtccttggggcgaagcagctgatcctggtgggcgac
cattgccagctgggccccgttgtgatgtgcaagaaggcggccaaagccgggctctctcag
tctctctttgagcggctggtggtgctgggcatccggcccatccgcttgcaggtgcaatac
cgcatgcacccggccctgagcgctttcccttccaacatcttctatgagggctcgctccag
aatggcgtcactgcagcggaccgtgtgaagaagggatttgacttccagtggccgcagctg
gacaagcccatgttcttctacgtgactcaggggcaagaggaaatcgccagctccggcacg
tcttacttgaacaggacagaagctgcgaatgtggagaagatcaccaccaagctgctgaag
gctggcgccaagcctgaccagatcggcatcatcacgccctacgaggggcagcgctcctac
ctggtgcagtacatgcagttcagcggctccctgcacaccaagctgtaccaggaagtggag
attgccagcgtcgatgctttccaagggcgggagaaggacttcatcatcctgtcttgcgtc
agagccaacgagcaccaagggatcggcttcctcaacgatccccggcgtctcaatgtcgct
ctcacccgagcaaggtacggcgtcattatcgtcggcaaccccaaagccctgtccaagcaa
cccctctggaatcacctgctgaactactacaaggagcagaaggtgctggttgagggaccg
ctcaacaacctccgggagagcctcatgcagttcagcaagccccggaaactcgtcaacacc
atcaaccctggagctcgcttcatgacgactgccatgtatgatgctcgtgaagctattatc
cccggatcagtatacgaccgcagcagccaaggtcggccttccaacatgtatttccaaacg
cacgatcagatcgggatgatcagtgccgggcccagccacgtcacggccatgaacatcccc
atcccgttcaacctggtgatgccgcccatgccgccacccgggtattttggacaggccaac
gggccagctgccgggcgtggaaaccccaaaggcaagaccagccggggtgggcgtcagaag
agccgctttgggatgccgggagccagccagtccaacctccccaacagccaggccagccaa
gacgtggtctcccagcccttctcgcagggccccctgacgcagggctacatctccatgagc
cagccctcccagatgagccagccgggcctgtctcagccagaactctcgcaggacagctat
cttggtgatgagtttaagtctcagatcgatgtggccctctcacaggactcgacttaccag
ggggaacgcgcgtatcaacatggagtgacgggactgtcacagtattag
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integrated database retrieval system
