Hemicordylus capensis (graceful crag lizard): 128345833
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Entry
128345833 CDS
T08891
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04510
Focal adhesion
hcg04512
ECM-receptor interaction
hcg04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128345833 (COL2A1)
04518 Integrin signaling
128345833 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128345833 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hcg00536
]
128345833 (COL2A1)
Glycosaminoglycan binding proteins [BR:
hcg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128345833 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
128345833
NCBI-ProteinID:
XP_053154365
LinkDB
All DBs
Position
2:complement(197717747..197855527)
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTLVLLAATQVILLAVVKCQDADLQEAGSCVQDGQRYSDKDVWKPEPCRICVC
DTGTILCDDIICEEMRDCLSSEIPFGECCPICPTDQPTASGLPGPKGQKGEPGDIKDVVG
PRGLPGPQGPSGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEPGEPGASG
PMGPRGPPGPPGKPGDDGEAGKPGKSGERGSPGPQGARGFPGTPGLPGVKGHRGYPGLDG
SKGEAGAAGAKGEAGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGAPGAKGEAGPTGARGPEGAQGSRGESGTPGSPGPAGAPGNPGTDGIPG
AKGSAGGPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAG
PQGAPGPAGEEGKRGGRGEPGAAGPIGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPPG
LGGPKGPGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAGGPPGPAGPAGERGEQG
APGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGTPGLVGPRGERGFPGERGTPGAQGLQG
SRGLPGTPGTDGPKGATGPTGPLGAQGPPGLQGMPGERGAAGISGPKGDRGDVGEKGPEG
APGKDGGRGLTGPIGPPGPGGPNGEKGESGPPGPSGAAGARGAPGDRGEPGAPGPAGFAG
PPGADGQPGAKGEQGESGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPPGSPGASGKDGPKGARGDAGPTGRAGDPGLQGPAGPPGEKG
ESGEDGPPGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGPGDRG
PPGPVGPPGLTGPSGEPGREGNPGSDGPPGRDGSPGVKGDRGETGPVGSPGAPGPPGSPG
PVGPTGKQGDRGEAGAQGPLGPAGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTG
LQGLPGPPGTSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG
PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPLRYMRSDQASSNLRQHDAEVDA
TLKSLNNQIESIRSPEGSKKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNM
ETGETCVYPKPSNIPKKNWWTSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANIQMTF
LRLLSTEGSQNLTYHCKNSIAYMDEASGNLKKALLIQGSNDVEIRAEGNSRFTYSALQDG
CTKHTGKWGKTIIEYRSQKTSRLPIIDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactttagtgctcctggcagccactcaagtcatttta
ttagcagttgtcaaatgtcaggatgcggatctacaggaggcaggcagctgtgttcaggat
gggcagaggtatagtgataaagatgtgtggaaacccgaaccctgccggatctgtgtctgt
gacactgggactatcctctgcgacgacataatctgcgaagaaatgcgagactgtctcagc
tctgagatacccttcggagaatgttgccccatctgcccaactgaccagcccactgccagt
gggctacccggccccaagggacaaaaaggggaacccggcgatattaaagatgttgtagga
ccaagaggccttcctggaccacagggaccttcaggtgaacaaggacccaggggagatcgt
ggagataaaggagaaaagggtgctccaggcccacgtggcagagatggcgaacctggtaca
cctggcaatcctggacctcctggacccccaggccccccaggcccccctggccttggtgga
aactttgctgctcagatggctggaggatttgatgagaaagcaggtggtgctcagatggga
gtgatgcaaggacccatgggacctatgggaccacgaggccctccaggaccttcaggatct
cccggccctcaaggatttcaaggcaaccctggcgaacctggagaacctggtgctagtggt
ccgatgggtccccgtgggccacctgggccacctggaaaacctggcgatgatggtgaagca
ggaaaacctggcaagtcgggagagcgtggatcacctggacctcagggtgctcgaggtttc
cctgggactccaggtctccctggtgtaaaaggtcacagaggttaccctggtttagatggt
tccaagggagaagctggtgctgcaggagctaagggtgaagctgggtctccgggtgagaat
ggttctcctggtcctatgggtccacgtggtcttccaggtgagagaggacgtcccggccca
tctggtgctgctggtgctcgtggtaatgatggtctccctggcccagctggtccacctgga
cctgttggccctgcaggagctccaggattcccaggtgcaccaggtgcaaagggtgaagct
ggtcccactggtgctcgtggacctgagggcgctcaaggctcccgaggtgaatctggaacc
cccggctctcctggacctgcaggagcaccaggcaaccctggaactgatgggatccctggt
gccaaaggatccgcgggtggtcctggtattgctggtgctcctggttttcctgggccccgt
ggaccacctgggcctcaaggtgcaactgggcctttgggtcccaaaggtcagacgggagaa
cctggcattgcaggcttcaaaggtgaacaaggccccaagggcgaaactggccctgcaggt
cctcaaggagctcctggaccagctggtgaagaaggcaagagaggtggccgcggtgagcca
ggagctgcaggtccaattgggccacctggagagaggggttctcccggaaatcgtggtttc
ccaggtcaggatggattagctggtcccaagggtgctcctggagaacgtgggcctcctggc
cttgggggtcccaaaggacctggtggagatcctgggcgccctggagagcctggcctacct
ggtgctaggggtctcactggtcgtcctggtgatgctggtcctcaaggcaaagttggtcca
tctggtgcccctggtgaagatggacgacctggtccacctggtccacagggtgctcgtggt
cagcctggcgtcatgggtttcccaggtccaaaaggtgctaacggcgaacctggtaaagct
ggtgagaaaggacttcctggtgctcctggcctaagaggtctccctggcaaagacggtgaa
acaggagcaggtgggccaccaggacctgctgggccagcaggtgagagaggtgagcaaggt
gccccaggaccttctggattccagggacttccagggcccccaggtcctccaggtgaaggt
ggaaaaccaggtgaccagggtgttcctggagaggctggtactcctggacttgttggcccc
agaggtgaacgcggcttcccaggtgaacgtggaactccaggtgcccaaggcttgcaaggt
tctcgtgggcttcctggcactcctggtactgatggacccaagggtgcaactggtcctacc
ggcccccttggagcccaaggccccccaggtctgcagggaatgcctggtgagagaggagca
gctggtatttctggaccaaagggagaccggggtgatgttggtgaaaagggtccagaagga
gcacctggcaaagatggtggccggggtttgactggtcccattggtcctcctggtcctggt
ggccccaatggcgagaagggtgaatctggtcctcctgggccatctggtgctgctggtgct
cgtggtgcccctggtgaccgtggtgaacctggcgctcctggtcctgctggatttgctggg
ccccctggtgctgatggccaacctggtgctaaaggcgagcaaggtgaatctggccagaag
ggagatgctggggccccaggcccacaaggtccgtctggtgctcctggcccacagggtcca
actggtgtgactgggccaaagggagcacgtggtgcacagggacccccaggtgccactgga
ttccctggtgcagcaggacgagttggaccaccaggccccaatggcaatcctggtccccca
ggctcaccgggcgcatctggcaaagatggtcccaagggtgcacgtggtgatgcaggccca
actgggcgtgctggtgatcctggtttgcaaggccctgctggtcccccgggagaaaaggga
gaatccggagaagatggcccccctggtgctgatggcccccctggacctcaaggtttggca
gggcagagaggcattgttggtctccctggtcagcgtggtgagagaggcttccctggtctg
cctggtccttctggtgagcctggtaaacaaggagcctctgggggtcctggggatagaggc
ccacctggccctgttggcccaccaggtctgactggtccctctggtgagcctggacgtgag
ggtaaccctggttcagatggtccccctggcagagatggttcccctggagtgaagggtgat
cgtggtgagactggtcctgttggtagtcctggtgcccctggcccacctggctctccaggt
cctgttggtccaactggcaaacaaggagacaggggtgaagcaggtgctcaaggtccgttg
ggtccagctggtcctgcaggtgcacgtggcatgccaggtccacaaggtcctcgtggtgac
aaaggtgaagctggcgaggcaggtgaacgaggtctgaagggtcacagaggattcactggt
ctgcagggtctccctggacctcccggtacctctggagatcaaggtgctgctggtcctgct
ggtccctctggccccaggggtcccccaggtcctgttggcccctctggcaaagatggctct
aatggaatgcctggccccattggccctcctggtcctcgtggtcggagtggagaaactggc
cctgctggtcctcctggaaaccctggaccccccggtcctcccggcccacctggacctggc
attgacatgtcagcctttgctggactgggtcagacagagaaaggccccgaccctctgcgc
tacatgcgatccgaccaggcttccagcaacttgcggcagcacgatgctgaggttgacgcc
actttgaagtcactcaacaaccaaattgaaagcatccggagccccgagggcagtaagaag
aacccagcccgtacctgtcgtgacctgaaactctgccatcctgagtggaagagtggtgac
tattggattgaccccaaccagggctgcaccttggatgccatcaaggttttctgtaatatg
gagactggtgaaacttgtgtttaccctaagcctagcaacattcccaagaagaactggtgg
acaagcaagagcaaagacaagaagcacatctggtttggagagaccatcaatgggggtttc
cactttagctatggagatgacaacctggctccaaacactgccaatatccagatgaccttc
ctgcgccttttgtcaactgaaggctcacaaaatctcacctaccactgcaagaacagcatt
gcctacatggacgaggcttctgggaaccttaagaaagctctcctgatacaaggctccaac
gacgtggaaatcagagctgagggcaatagcaggtttacatatagtgccttgcaggatggc
tgcacgaaacacactggcaaatgggggaagacaatcattgaatacagatctcagaagact
tcacgcctgcccatcatcgatattgcacctatggacattggtggagctgatcaggaattt
ggtgttgacattggcccagtgtgctttttgtaa
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