Hemicordylus capensis (graceful crag lizard): 128345908
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Entry
128345908 CDS
T08891
Symbol
VCAN
Name
(RefSeq) versican core protein isoform X1
KO
K06793
versican core protein
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04514
Cell adhesion molecules
hcg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
128345908 (VCAN)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128345908 (VCAN)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hcg00535
]
128345908 (VCAN)
00536 Glycosaminoglycan binding proteins [BR:
hcg00536
]
128345908 (VCAN)
04091 Lectins [BR:
hcg04091
]
128345908 (VCAN)
Proteoglycans [BR:
hcg00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
128345908 (VCAN)
Glycosaminoglycan binding proteins [BR:
hcg00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
128345908 (VCAN)
Lectins [BR:
hcg04091
]
C-Type lectins
Lecticans
128345908 (VCAN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
V-set
Sushi
EGF_TEN
hEGF
ig
EGF_2
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
128345908
NCBI-ProteinID:
XP_053154535
LinkDB
All DBs
Position
2:54141414..54350273
Genome browser
AA seq
3134 aa
AA seq
DB search
MLKSILWMCWSLAMTYAFRKVKVEKSPPVKGFLAGRAVLPCFFSTLPTLPPSYHNTSEFL
RIKWSKIEQDKGGKDLKETTVLVAQNGNIKIGQDYKGRVSVPSHPEDIGDASLTMVKLRA
SDAGVYRCDVMYGIEDTQDIVSLAVDGVVFHYRAATSRYTMNFQQAQEACLENGGVIANP
DQLKAAYEDGFEQCDAGWLSDQTVRYPIKQPRVGCYGDMMGKEGVRSYGYRLPNETYDTY
CYVGSLNGDVFHITSPNKLTYEEAKRQCEVHDAELASVGDLHAAWRNGFDQCDYGWLADG
SVRYPVSVARIQCGGGLLGVRTLYRYENQTGFPYPDSRFDAYCFQRKENISDSASVELII
PFENGPANVVSKQPVPDAKEKMPKKIISLSTVLPQTVTDFSDSSEVTESDTIRSDFVVIT
PTRAVPDLSEEVHWSSESQTEPIEVGPIRTSVAVLLRTDLSEPVETETSITLTKEETHLG
IQPTKESLEAKADTKLTTVVIPKELLTVHHEQTVEEKEYVSVRPDQRPVASSSVPELSVV
KVSKPFLDENATTSKDESTLFESKRPPATEHTKSYETPVFTATDRTKVVYSTDSAESKGK
EEMSPAESTVTSFAAGGFTKTERDDVPRHHDIIVSTPGVQQEKTEGTIDKKYDWTFEGST
AEWQPDLEVPRQITTPSMDTEDTTGPDSVVFTDATKMATLTAMSRREPGISLVSETSEDQ
TVKDAVTITIPTGATGKTTEATTIFQEESGTKDQAIEKLSPAPDVTAVVTKLPGHDVEGS
AYEEKYAATDALSTSVKIATTKPDLSSTDTATEHKLKTTDVPPTQPSIESESKEPAIKPV
GSLATEAIGPAAEKSTDMEKVDTLPTHSPEGSGTTEDAIGTEPVLFSAIATSKPTVVSGI
TTSTIAAVDKIRPTSAPKPLITKTRPPLIDREPDEDTSKDMVIIDESISTIKTTTDDDFT
GTTESDIDKEYFTSSSVTSVAQPTGPPTEVLEPQEEPPSTSDDGIGVESSPDINLFVVAI
SGNDTDPLHGIWDMLGYPIHPDESDESSIDSESTHEPCTATPDEESEEILILGHFYPDLF
NLGEGEEEEEEDCENATDVTTPPALQFINGKHQVTTAPKDPKAEEVRSDQIESLAHSKNV
TFSQINETNIVSENEASNVSQSGESTEIIGEDTITQKLMAESVVTELVFSGESEISTTDK
TLEKTFVYDQSPSETTDKLKESGTDFQRIPTKHPSTFSLSNTKYAGDITIQPELNSYAFS
HTLKTTLKEDSKRVSLITTVPSRFPPSTTVTVAMEDTKPENEASVYQDYYKSTIRPDILS
SVRSYLETTRSSWDLAEGSGDVKEEISKSKVVIMKTAGTEKIPVQEVFSDLSQPMPTKSN
LNISQLPATSHKETSSTLEQTSIEAIIPQSVTELNLGEKNLTSITNAINVAEDEKATMST
ISSPKEYSTLETEKLLFNNELKNFSDIVRAVSQESITLAKTISVTDISPLKTEDLTEGRM
STDEESGGRSTGDWRKPEKDILLGGSTKKVVSTDSPFIDPGSGEMDVIMQPTTLTSFPLR
SAPGSNDTQVNEIDILNTDTSSLKHAITVDPTIQVLSTESHRQTMETRIKDQVPNNVTDN
QGLLTLSFSEKAILESDEEVTTSSSTKEEKTDLSETYGMTSSLKPLTNIASDIIVTHSIR
SIQPVMESTESTVIISSSTPRILTENTDIQKIGSGFTINETLESAQPENARFSPTTITEK
IHMVDMGSGEEFRDDRSNVVLVPHDPMERIIDTKFPGIEQGSGDTDSFSEPLIKTTVLSQ
LLLDRQGTQTIKNEREVSSTSTYQQFTDAPTKLDVSSDTVIMTINTGITRQVSNIPNIEE
KIPVELETTTFSPETPFKDDMNSDKEDSAEMSGKMAQRVTTQEYLIKSTQSIIEQLRMSA
VSTFTPYLEETKTYITSSPEFVQKNPSSYDKALITESKTFPNQVISTSVTVGEKEEQSEQ
NVYSTEDSHKPSRLYKPITTIISNVPLFSEQGSGDEFFTVPSTIMPLSSTILTESITALN
HDILHPKSSGVHFSEEKIKESNRQSIEPNEDSSIEIKFPYTITETLPTARDKRMPAATTL
DAGAIDTETSTIKHFIHENSQNQGKVTLSIPTAREGSSQGEHQEDTTSPSKLFSGTPSLG
TAQTLKTTSNPKMWSTVHESSGEGSGWIDMIGRHSESPTPMPKTEATLEFHSHGEKISDV
DPDVAMNVSQMVTISPTHRYKQQHMLPTSDSGLSETFADESSTNNIKDYEELIVIVDSKR
NYSQDILNFNDETTIIDADQFKSRLEDINSQATAHTERHSMYDVHTTTTEIDIQNTSPEI
SLTNDKSGNFGDSQGKAVTSNLIHSEHITSKHTLISDNVGSGDDITFTTETPITQELPKM
ATWLPTMSLPFSITIPSPTSPRAGEKAEESQFGIKHVESKGTVDDNSELHTLSDNQAIAD
ESEVVSTSGVSEEQEVEIDKKKDLVPSASPYITVKSGQALITNKSKESTVTIQLVSQSEE
ENDIYKGMKTAATEPVGSDPEKLFPVTPTFPVTVYLLNGASENPDEIMQSTSSSADSDKH
HLSSMQTFREASADIAATYKPSPKDSSDNIEFPLESSPQLESETIITESTPISSGHVTEM
KEKPGSSTEQVPTVESPVSGELLSKEAKPTNFTHSDTDILEASSEDSSSESVTELNQLDE
NSADGGLPWVRTMPSAVPHESKTGGIFGADEEADAWPISSPPSVDTPTASVMQKEPTTIS
SNTATKSPGLEIIPDYNKQTRNTEDMNMNELVTPPFLPLDITNGSNFLIGTGGGSVEGTA
VQIPGQDPCKSNPCLHGGTCYPRDSFYICTCIPGYSGDRCDIDVDDCQSSPCRNGATCID
GVNTFTCLCLPSYVGALCEKDTETCDYGWHKFQGQCYKYFAHRRTWDAAERECRLQGAHL
TSILSHEEQLFVNRLGHDYQWIGLNDKMYENDFRWTDGSVLQYENWRPNQPDSFFSSGED
CVVIIWHENGQWNDVPCNYHLTYTCKKGTVACGQPPVVENAKTFGKMKPRYEINSLIRYH
CKDGFIQRHVPIIRCQGNGRWDLPKITCMTPASSFQRTYSKKYYYKHSSPGKGNSLNSSK
HFHRWIRTWPDSRR
NT seq
9405 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaagtatcttatggatgtgttggagcttagccatgacatatgcattccgcaaa
gttaaagtggaaaaaagtccaccggtgaagggcttcctcgctggaagagctgtccttcct
tgcttcttttcaaccttgcctactttgccaccaagctaccacaatacaagtgaatttctt
cggattaagtggtcaaagattgagcaggataaaggtggaaaagatctaaaagaaaccaca
gttttagtggcccaaaatgggaatatcaagataggacaagactacaaagggagagtgtca
gttccaagccatccagaagacattggtgatgcatcattgactatggtgaaattacgggca
agtgatgctggggtttaccgctgtgatgtcatgtatggaattgaagatacccaggacatc
gtctcgctggctgttgatggtgttgtgtttcactaccgtgcagcaaccagcaggtatact
atgaatttccagcaagctcaggaggcttgtttggagaatggtggtgttatagcaaatcct
gatcagctgaaagctgcatatgaagatggatttgaacagtgtgatgctggatggttgtct
gaccagactgttagatatcccattaaacaacccagagttggctgctatggagatatgatg
ggcaaggaaggagtcagatcctatgggtatcgtcttcccaatgagacttacgatacctat
tgctatgtaggaagcttaaatggtgatgtcttccatataacttctcccaacaaattaacc
tatgaagaagccaaaaggcaatgtgaggtgcacgatgcagagcttgcttctgtgggcgac
ctgcacgctgcttggaggaatggctttgaccaatgtgactatggttggctagctgatgga
agtgtgcgttatcctgtttctgtggcaagaattcaatgcggaggaggtttacttggagtg
cgaaccctgtatcgctatgagaatcaaacaggctttccttatcctgacagcagatttgat
gcctactgctttcaacgtaaggagaacatatcagattctgcatctgttgaactgatcata
ccttttgaaaatgggccagccaatgtagtatctaagcaaccagtgcctgatgcaaaagag
aagatgcctaagaagattattagtttatccactgttctacctcagaccgttacagacttt
tctgattcatcggaagtgacagaatcagatactatacggagtgacttcgtagtcattaca
cccacacgggctgttcctgacctcagtgaggaagttcactggagttctgaaagtcagact
gaaccaatagaggtaggaccaataagaacttctgtagctgttctattgagaactgacttg
agtgaacctgtagaaacagagacttccattactctaacaaaggaagaaacacatcttggc
atccagcccacaaaagaatctttggaagcaaaagctgacacaaaactcacaactgttgtc
attccaaaagagctgctcacagttcatcatgaacaaactgtagaggagaaggagtatgtc
tctgttaggcctgatcagaggccagtggcttctagcagtgttccagaactaagtgtagtt
aaagtgtcaaagccattcttggatgagaatgctaccacatcaaaagatgagtcaacctta
tttgaaagcaaaagaccaccagctacagaacatacaaagagctacgaaacaccagttttt
acagcaactgatagaactaaggtagtatacagcactgattcagcagaatcaaaagggaaa
gaagaaatgtcacctgctgaaagcactgtgacatcctttgctgcaggggggtttaccaaa
acagaaagagatgatgtgccaagacatcatgatataatagtgtccacaccaggagtgcaa
caagagaagactgaaggcacaatagataagaaatatgattggacttttgaagggagcaca
gctgaatggcagccagatttagaagtccccaggcaaataactacgccatcaatggacact
gaagacacaaccggcccagattcagttgtgtttacagatgcaacaaagatggcaactttg
actgcaatgtcaaggagagaacctggcatttccctggtttctgaaacctcagaagatcaa
actgttaaagatgcagtgactattaccattccaacaggtgctacagggaaaacaacagag
gctacaacaatttttcaggaagaatctggtactaaagatcaagctatagaaaagctgtcc
cctgccccagatgttacagctgtggttacaaagttgcctggacatgatgttgaaggatct
gcatatgaagaaaaatatgcagcaacagatgctttgagcacaagtgtaaaaatagcaacc
acaaagcctgacctttcttccactgatactgccactgaacacaaattaaaaactacggat
gttcctcccacacaaccaagcatagaaagtgaaagcaaagagcctgcaatcaaacctgta
ggctcccttgcaacagaagctatcggtcctgcagctgaaaaatctactgatatggagaaa
gtcgatactcttccaacccatagtccagaaggttccggaacaacagaagatgctatagga
acggaacctgttttattttcagctattgcaacaagcaaaccaacagttgtaagtggcata
accacatctaccattgctgcagtagacaaaatccgacctacttcagcacccaagccttta
attaccaaaacacgaccacctctaattgacagggaacctgatgaggatacgagcaaagac
atggtaataattgatgaatctatttctaccattaaaaccactactgatgatgattttaca
ggcaccacagaatcagatattgataaagaatattttacatcatcaagtgtcacctcagtt
gcacagcccacaggaccacccacagaggttttagaacctcaagaagagcctccttctact
tcagatgatggcataggggtggaaagcagccctgacataaatttgtttgttgttgctatc
tcaggcaatgatacagatccactgcatggaatttgggatatgcttggttacccaattcat
ccagatgaatcagatgagtcttccatagattctgaatcaacacacgaaccctgcacagca
acccctgatgaagagtctgaagaaatccttattctgggacatttctatccagatttattc
aatcttggggaaggagaggaggaagaggaggaggactgtgagaatgctactgatgtcaca
actcccccagcattgcagtttataaatgggaagcatcaggtgaccactgcacctaaagat
ccaaaagctgaagaagtaagaagtgaccaaattgaaagtttagcacattccaaaaatgta
acattttctcaaatcaatgaaactaacatagtgtctgagaatgaagcctctaatgtatca
cagtccggtgaatctactgaaataataggagaagatacaattacacaaaagctaatggca
gagtctgtggtgacggaactggtcttcagtggggaatcagaaatttctaccacagataaa
acccttgaaaaaacatttgtgtatgaccagtctccatcagaaactacagacaaattgaaa
gaatctggaacagattttcaaagaatcccaactaaacatcctagcactttctctttaagc
aatacaaaatatgcaggagatattactatccagcctgagttaaatagttatgccttttca
cacacactgaaaacaacattaaaagaagattcgaaaagggtttctcttataactactgtt
ccaagtaggtttcctccttcaaccacggtaactgtagccatggaagatacaaagccagaa
aatgaagcttctgtttatcaggactattataaatcaacaattagacctgacatactttct
tcagtgagaagttatttggaaacaaccagaagttcatgggatttagctgaaggctctgga
gatgttaaagaagagatttctaaatctaaagttgtgataatgaaaacagcaggaactgaa
aagatacctgttcaggaagttttctcagatcttagccaacctatgcctaccaaaagcaac
cttaacatttcacagcttcctgctacttcacacaaagaaactagttctacacttgaacaa
acttccatagaagctattattcctcaatccgttactgaattgaatttaggggaaaaaaat
cttacctctatcacaaatgcaataaatgtggcggaagatgagaaagcgactatgagcacc
atttcttcacctaaggaatattcaacacttgagacagaaaagttgctgttcaataatgaa
ctgaagaactttagtgatattgtcagggctgtgagtcaagaatccataaccctagccaaa
acaatatctgtgacagatatatcaccactcaaaactgaagatttaacagaagggagaatg
tccactgatgaagaatctggtggtagatccacaggtgattggcggaaacctgaaaaagac
atacttttggggggttccacaaaaaaagtggtaagtactgactccccatttattgatcca
ggttctggagaaatggatgttataatgcagcctaccaccttgacttcgttcccactgagg
tctgcacctggaagcaatgacacacaagtaaatgagatagatattcttaacacagataca
tcatctttgaaacacgcaataactgttgatcccacaatacaagtgttaagtactgaatca
cataggcagaccatggaaactagaataaaagatcaagtaccaaataatgtaacagataac
caaggactacttacattgtcatttagtgaaaaggccattctggagtcagatgaagaggtg
acaacgtcttcttcaacaaaggaagaaaaaactgacttatctgaaacatatggcatgaca
tcatctctgaagcctctgacaaacattgcttctgacatcattgtgactcatagtatcaga
agtatacagccagtaatggaatcaactgaaagtactgtaataatttcttccagtactcca
agaatattgacagaaaacactgacatacaaaaaataggctctggatttacaataaatgaa
acattagaatctgctcaaccagaaaatgcaagattttctccaaccaccattacagagaaa
attcacatggtagacatgggctctggagaggaattcagagatgatagaagtaatgtggtg
ctagtgcctcatgatcctatggaaagaataattgataccaaatttccagggattgaacag
ggttctggagatacagactccttttcagagcctctgataaaaacaacagttttatcacag
ttactcttagacagacaaggtactcaaacaataaaaaatgaaagagaagttagtagtaca
tctacatatcaacaatttacagatgcacctacaaagttagatgtaagtagtgacactgtg
atcatgacaatcaatacaggaattacaagacaagtctctaatataccaaacattgaggag
aaaataccagttgagttggaaacaacaactttttctccagaaactcctttcaaagatgac
atgaattctgataaagaagattccgctgaaatgtcaggaaaaatggcacaaagagtaaca
acacaagaatatttaattaaaagcacacaatctattattgaacagctaagaatgtcggct
gtatctacatttaccccatacttagaagaaacaaaaacttacatcacttccagtcctgaa
tttgtgcaaaaaaatccctcttcatatgataaagccctcataactgaatccaaaacattt
ccaaaccaagtcattagcacttcagtaacagtcggagagaaagaagagcagtcagaacaa
aatgtttactctactgaagatagccataaaccttccagactgtataagccaataactaca
attatcagtaatgttccattgttctcagaacaaggttcaggagatgaattttttacagtt
ccgtccaccataatgcccttaagttctacgatattgacagaaagtataactgcattaaat
catgacattcttcatcctaaaagttcaggagtacatttttcggaggagaaaataaaggaa
tctaatagacagtccattgaaccaaatgaagattctagcattgaaatcaaatttccatat
actataacagaaacattgcctacagcaagagacaaaagaatgcctgctgcaactacttta
gatgctggagccattgacactgaaacatctaccatcaagcacttcattcatgaaaattct
cagaaccagggaaaagtaactttatcaataccaactgctagagagggaagttcccaaggg
gaacatcaagaagatacaacttctccttctaaattatttagtggaaccccaagtctgggt
acagcccaaacacttaaaactacctcaaacccaaaaatgtggagcacagttcatgaaagt
tctggagaaggatctggctggatagacatgataggaaggcattcagaatcacctacgccg
atgccaaaaacagaagcaacacttgaatttcatagccatggtgaaaaaatttcagacgtg
gatccagatgtagcaatgaatgtatcacaaatggtaacaatatcacccacccacagatat
aaacaacaacatatgttaccaacctcagacagtggtctttcagagacatttgcagatgaa
agttctacaaacaacataaaagactatgaggaacttattgtgattgttgatagcaaaagg
aattattcacaggatattttgaactttaatgatgaaacaacaattatagatgctgatcag
tttaagtcaagacttgaagacataaacagccaagcaactgcacatactgaaaggcattca
atgtatgatgttcatactaccacaactgaaattgacattcagaatacatcacctgaaatt
tctctaaccaatgataaatcaggtaactttggagatagtcaaggaaaggcagtaaccagt
aacttaatacatagtgaacacataacatctaaacacacactaatatcagataatgttggt
tcaggagatgacataactttcacaacagaaactcccatcactcaggagttaccaaaaatg
gccacttggctcccaaccatgtcacttcctttcagcattactataccttctccaaccagt
cccagagctggtgaaaaagctgaagaatcacagtttgggattaaacatgtagaatccaaa
ggtacagtagacgacaactctgaattgcacacattatcagacaaccaggcaatagcagac
gaaagtgaagttgtttctacctctggtgtttcagaagaacaagaagtagagatagataaa
aaaaaggatttggtgccttctgcatcaccatacataactgttaagtcagggcaagctttg
ataacaaacaaatctaaagaaagcactgttaccattcagcttgtttcccaaagtgaggag
gagaatgacatttacaaaggaatgaaaactgcagcaacagaaccagtaggaagtgatcca
gaaaaattatttcctgtaacaccaacatttcctgtgacagtctatttacttaatggagct
tctgagaaccctgatgaaatcatgcaaagtacttcatcatcagctgattctgacaagcac
catttgtcatccatgcagacttttagagaagctagtgctgacattgcagcaacttacaaa
ccttcccctaaagattcatcagataacatagagtttccattagaatcttctccccaactg
gaatcagaaactatcatcactgaaagtacacctatttccagtgggcacgtaacagaaatg
aaagaaaagccaggaagttctacagaacaagttcctacagtagaatcacctgtttctgga
gaactcctttcaaaggaagcaaaaccaacaaactttacacattcagacactgacatttta
gaagctagctcagaagattcttcctctgaaagcgtgacagagctaaaccaattagatgaa
aatagtgctgatggaggcttaccatgggttcgcactatgccttctgcagttccacatgaa
agtaaaacaggtggaatatttggtgctgatgaggaagctgatgcctggccaatttcatcc
ccaccatctgtggataccccaactgcttcagttatgcagaaggagccaacaacaatttct
tctaacactgcaacaaaaagcccaggcctggaaatcattcccgactataacaaacagaca
agaaacactgaggatatgaatatgaatgaacttgtaacaccaccatttttacctctggat
attactaatggatcaaatttcctgattggcacaggtgggggttctgttgaaggcactgca
gttcagatcccaggccaagatccatgcaaaagtaatccatgtcttcatggagggacttgc
tatccacgtgattctttctacatctgcacatgtattccaggttacagtggtgaccggtgt
gacatagatgttgatgactgccaatccagtccttgcagaaatggagctacatgcattgat
ggtgtcaatacatttacttgcctttgtcttccaagctatgttggggcactttgtgaaaaa
gacacagaaacctgtgattatgggtggcacaagttccaagggcagtgctacaagtacttt
gcccatcgccggacatgggatgcagctgaaagagagtgccgcctccagggagcccatctg
actagcatcctgtctcatgaagaacagctctttgtgaaccgtctaggacatgactatcag
tggattggcctaaatgataagatgtatgagaatgatttccgctggactgatggcagtgtg
ctgcaatatgaaaactggagaccaaaccaaccagacagtttcttttcttctggagaagat
tgtgtggttataatttggcacgagaatggccagtggaatgatgtaccatgcaattaccat
ctcacttacacttgcaagaaaggaacagttgcttgcggtcagcctccagttgtagaaaat
gcaaagacgtttgggaagatgaagcctcgttatgaaattaactcattgatcagatatcac
tgtaaagatggcttcatccagcgccatgttccaatcatccggtgccaagggaatggacga
tgggatttgcctaaaattacttgcatgactccagcatcctcattccaaaggacttattct
aagaaatattattataaacattcttcaccagggaagggaaactcattaaattcatcaaaa
cattttcatcgttggatcaggacatggccggattcaaggcgctga
DBGET
integrated database retrieval system
