Hemicordylus capensis (graceful crag lizard): 128346103
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Entry
128346103 CDS
T08891
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hcg03041
]
128346103 (YTHDC2)
Enzymes [BR:
hcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128346103 (YTHDC2)
Spliceosome [BR:
hcg03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128346103 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
AAA_22
Ank
nSTAND3
ATPase
Ank_4
PhoH
AAA_23
AAA_7
T2SSE
SRP54
AAA_16
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
128346103
NCBI-ProteinID:
XP_053154986
LinkDB
All DBs
Position
2:75591446..75661937
Genome browser
AA seq
1456 aa
AA seq
DB search
MSRPSSVSPRPPGSGPPSGGPSTASAASLSSSCSGSGRAKGLKDIRIDEEVKIAVNIALE
RFRYGDQREMEFPSSLTSTERAFIHRLSQSLGLISKSKGKGANRYLTVKKKDGSELAHTV
MTCNLIPNTKHAIRSLVQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGI
PQIPVKRGESEFDSFRQSLPVYEKQDEIVRIIKENKVILIVGETGSGKTTQIPQFLLDDC
YKNGIPCRIFCTQPRRLAAIAVAERVAGERREKIGQTIGYQIRLESRVSPKTLLTFCTNG
VLLRTLMAGDSALSTVTHVIVDEVHERDRFSDFLLTKLRDTLQKHSTLKLILSSAALDVN
LFVRYFGGCPVIYIPGRPFEVKEMFLEDLLRSTGYTNKEMIKYKKEKQREEKQQTTLTEW
YSAQDNSKPESQRQRAIPNVAEEYDLLDDGGDTVFSQLAEKDFNCLEPWLIKEMDACLSD
IWLHKDIDAFAQVFHLILTENVSVDYRHSETSATTLMVASGRGFLSQVEQLIGMGANVHI
KSSNGWTALDWAKHFGQTEVVDLLDSYCASLEFGNLDESSLVHANAGELSAEDRELLKAY
HHSFDDEKVDLDLIMHLLYNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADNAHR
FQVFMLHSNMQTSDQKKVLKTSPPGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFD
ALNCVTMLKMVWISKASAVQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQE
LCLHTKLLAPINCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADL
PVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFS
DHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGG
GDIRDVNTNSENWAVVKGALVAGMYPNIVHVDRENVVLTGPKEKRVRFHPTSVLSQPQYK
KIPPANGQVAAIQALPTDWLIYDEMTRAHRIANIRCCSVVTPVTVALFCGSARLPSNALQ
EPSSFRVDGVANDSSDSEMEDRTTANLAALKLDEWLSFKLDPEAASLLLQLRQKWHSLFL
RRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRS
NTSRKSSAEAEFVDDPFNAERNPPKTTLNYDINKEQNNTILRVLMKSASPAFHQPLKYKE
RSVLHSKRSTDDRLDQSSVKSTDSSTFPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMK
SSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSVVYLVFSVQGSGHFQGFARMSSEIGR
EKSQDWGSTGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQL
LQLWDRIPLGERNAAD
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcccgagcagcgtctccccgcggcctccggggagcggccctccgagcgggggt
ccctccacagcctcggccgcctcgttgtcgtcgtcctgctcgggcagcggccgggccaag
gggctgaaggatattcgcatcgacgaggaggtaaaaatcgccgtcaacatcgccctggag
cggttccgatatggggaccagcgagaaatggaatttccgtcatccttgacgagtactgaa
agagccttcattcaccggctgagtcagtctcttggtctgatttctaaaagtaaggggaaa
ggagcaaacagatatctaactgtgaagaaaaaagatggatctgagttggcacatacagtg
atgacatgtaacttaattccaaacacaaaacatgcaatcagaagcctcgttcagcgattt
cctgtcaccaataaagagcgcacagagctactaccaaagactgagagaggaaatgtattt
gctgttgaagctgagaatagagaaatgagcaaaacgagtgggagacttaacaatggcatc
cctcaaatcccagtgaaaaggggagaatcagaatttgattcctttcggcagtctctacca
gtttatgaaaagcaagatgaaattgttagaattattaaagaaaataaagttattttgatt
gtgggagaaactggatcaggaaaaactactcagattcctcagtttcttcttgatgactgt
tacaaaaatggaattccatgtcgcatattttgcactcagcctagacggttggcagcaatt
gctgtggctgaaagggttgctggtgaaagaagagagaagattgggcagacgattggctat
cagatccgactggaaagcagggtttctccaaagacactgttaacattttgcaccaatggt
gtattacttcgtacactaatggcaggagatagtgcactgtcaactgtaactcatgttatt
gtggatgaagtccatgagagggatcggttcagtgacttcttgctaacaaaattaagagat
acattgcagaaacattcaactctgaaactcatactttctagtgctgctctggatgtgaac
ctctttgtaagatactttggaggctgtccagtaatatatataccaggaaggccatttgaa
gtaaaggagatgtttctagaagacctattaagaagtacaggttatacaaataaagagatg
ataaaatacaaaaaggaaaaacaacgagaggaaaagcaacagacaactctgacagaatgg
tattctgctcaggacaacagcaagccggaatcacaacggcagagagcaattcccaatgta
gctgaagaatatgatctattggatgatggtggtgacacagttttcagtcagttggctgaa
aaagatttcaattgccttgaaccttggttaattaaagaaatggatgcttgtctctctgat
atttggttgcacaaagatatagatgcctttgcacaagtgttccaccttattttaactgaa
aatgtcagtgttgattacagacacagcgagacaagtgcaacaactttaatggtagcttct
ggaagaggtttcctgagtcaagtagaacagttgattggtatgggagcaaatgttcacatc
aaatcatccaatggctggacagctttggattgggccaaacactttggacagacagaagtg
gttgacttgttggattcctactgcgcatcactagagtttggaaatctagatgaaagttct
ttggtccacgcaaatgctggtgagcttagtgcagaagacagagaactcttgaaagcgtat
catcacagttttgatgatgaaaaagtagatcttgacctgattatgcacctgctatacaac
atctgtcatagctgtgatgcaggagcagttttaattttcctacctggatatgatgagatt
gttggcttgagggatcgcatattgtttgatgacaagaggtttgctgataatgctcacaga
ttccaagtttttatgctgcattcaaatatgcaaacttcagatcagaagaaggtgctcaag
acctcgcccccagggatccgcaaaataatactctctacaaatattgctgaaacaagcatc
acagttaatgatgttgtctttgtgattgactctggaaaaatgaaagagaagtcctttgat
gcactcaactgtgtcactatgctcaagatggtatggatttctaaagcgagtgctgttcag
agaaagggcagggcaggacgttgtaggcctggaatttgtttccggcttttcagtagactc
cgatttcagaatatgctggaattccagactccagaacttctaaggatgcctttacaggag
ctttgtttgcatacaaaattgctagcccccatcaactgtcctattgctgacttcttaatg
aaagctccagagccgccacctgcactaattgtgagaaatgcagtgcagatgcttaagacc
atagatgctatggatacatgggaggatctgacagaactgggctatcatctggctgactta
ccagtagagccccatcttggtaaaatggtgctgtgtgctgttgttctgaaatgcctggat
cctattctgaccattgcatgcactcttgcatatcgagacccttttgtgctacctacgcag
gcctctcaaaagcgtgcagccatgctgtgcagaaaacgatttaccgcaggaacatttagt
gaccatatggcccttcttcgggctttccaggcatggcagaaggcgcgaagtgatggttgg
gaaagagctttttgtgagaaaaatttcctttctcaggcaacaatggagattatcataggc
atgagaacacagttgcttgggcagctcagagcgtcaggttttgttagagccagaggtgga
ggtgatataagagatgttaatacaaattcagagaactgggctgtggtcaaaggtgcctta
gtggctggaatgtatcccaatatagtccatgttgacagagagaatgttgtcttgacgggg
ccaaaggaaaaaagagtccgctttcatcctacttcagttcttagccagcctcagtataaa
aagattcctcccgcaaatggacaagtggcagctattcaggcactgcctacggattggctt
atatatgatgaaatgacgagagctcacagaatagccaacatcaggtgctgctcagttgtg
actcctgtcactgtggccctcttttgtggatcagctcggttgccaagtaatgctttacag
gagccttcgtccttcagagtggatggtgttgctaatgacagtagtgatagtgagatggaa
gacagaacaaccgctaacttggctgcgctgaaactggatgaatggctcagtttcaaatta
gatcctgaggctgctagcctgctcctccaactgagacagaaatggcacagtttatttcta
cgacgaatgagagctccttcaaagccctggtcccaagttgatgaggcaactatacgagcc
atcattgcagtcttaagcactgaagaacaatctgcaggtctacagcagccttcaggaatt
ggtcagcgaccaagacccatgtcatcagaagaacttccattagcatcttcatggaggtca
aacactagccgaaaaagctcagcagaagcagaatttgtagatgatccttttaatgctgag
agaaatccccccaaaacaactttaaactacgatataaacaaagaacagaacaatacaata
ttgagagtcctcatgaaatctgcatctccagcatttcaccaacctctgaaatataaagag
agaagcgttctgcattccaaacgaagcacagatgacagattagaccagtcatctgtgaaa
tccacagatagtagtactttccccagtccctgtgctagtccttctcctccatcatctggg
aagggttccaagtctccttctccaaggccaaatatgccagttcggtactttattatgaaa
agtagcaacctgaggaaccttgagatttcacagcagaaggggatttggtctacaacccca
agtaatgagcgaaaactgaatcgagctttttgggagagcagtgttgtttatttggtgttt
tcagttcagggatcaggacactttcagggttttgctcgaatgtcttcagaaattggacgc
gagaaaagtcaggattggggttctactggtttagggggagtgttcaaggtggaatggatc
cggaaagaaagtcttccctttcaatttgctcaccacttactcaacccttggaatgacaac
aagaaagtacagataagccgagatggccaggaactggaacctcaggttggtgaacagttg
ctacagctgtgggaccgtattcctttaggggagagaaatgcagcagattga
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integrated database retrieval system
