Hemicordylus capensis (graceful crag lizard): 128346777
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Entry
128346777 CDS
T08891
Symbol
SKIC2
Name
(RefSeq) SKI2 subunit of superkiller complex protein isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128346777 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128346777 (SKIC2)
Enzymes [BR:
hcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128346777 (SKIC2)
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128346777 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
128346777 (SKIC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
128346777
NCBI-ProteinID:
XP_053156428
LinkDB
All DBs
Position
2:253586492..253628198
Genome browser
AA seq
1302 aa
AA seq
DB search
MLNLHRRKAVVNYSCKNPHCFVVARSQHRLKALPPRGPLELPLSVLEVGCSGRFELITQE
EGPSGYGFPLTTLPHGLPPYAEELTSELEQRFLDSPEWLPIHHFERSHRFWPREKDIQSL
FEVNVTPVHSTLQAERNPTTGELLGFKEALVDNMGLSAKNSLSFQRAPGPPAEALRGSAT
NYPFWPGGMDEPSLEQIKTQDDLEEDIDFQKDLLTVPPGWKKGVEFTKQELKASSGLLNL
TNLLGALDTFDLGASSDEEGKEKTVEVEKKKKKGKGKGAKEEETPPAEPAPLQRANSLEE
LVLKDTSPIPKSATHPASAPAAAATTEPPKEQWAIPVDISSPVDDFYKRIPDPAFKWPFE
PDVFQKQAILHLEKHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKALSNQKF
RDFKNTFGDVGLLTGDVQLHPDASCLIMTTEILRSMLYNGSDVLRDLEWVIFDEVHYVND
SERGVVWEEVLIMLPDHVNIILLSATVPNTLEFADWIGRIKRKKIYVISTLKRPVPLEHY
LYTGNSQKTQNELFLLVDARGTFLTKGYYDAIEAKKERASKHSQTFGAKQPMHPGAGPGQ
DKNIWLSLIDMLRKKDQLPVVAFTFSRNRCDDNASMLTTVDLTTTTEKSEIHVFFRKCIS
RLKGTDRQLPQVLHMVDLLKRGIGVHHSGILPILKEVVEMLFSKGLVKILFATETFAMGV
NMPARTVVFDSIRKHDGANFRDLVPAEYIQMAGRAGRRGLDTTGMVIILCKNQVPEMADL
HRMMLGKPTQLQSQFRLTYTMILNLLRVEALRVEDMMKRSFSEFHTRRDSKVYEHRIGQL
SSILANMEPVDMAGQLGDLQEYYSLVRELKETRVLIQRRIMESVNGLKALSVGRVIVVKN
KEHKNALGVILQVSSDTANRAFSALVMCEKNLSDGDSAASKESNLPSSPEVPLPDDLLHT
KLFLPEGPCGHTIKKLGPADISGITTKTLRVNAERIMEDFKKRQMPRFRNDPPGPSAATA
TQELLRLAEGSPEGLPLLDPVNDLQLKDLEVVEGVMRARHLEEELPGFRCVHSPRFHMEF
VRFRERQQVLEELEQLRFLLSDQSLLLLPEYHQRVQVLRSLGYINEGGAVELKGSVARQI
SNHELLLTQLLLDNALTDLRPEEIVALLSCTVCQVRTQVEPQLPSILQKGIEHIRSVAEE
IALLQRKCGLQESVEDFVEQYKFGLVEVVYEWARGMPFAEIARLTDVQEGIIVRCIQRLD
ETCREMRNAARVTGEPTLHAKMEAASNMIKRDIVFAASLYTQ
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgctcaatctgcacagaagaaaggcagtggtaaattactcctgcaaaaacccacattgc
tttgtggttgctaggagtcaacaccgactcaaagccctgccccccaggggacctctagag
ctgcctctctcggttctggaggtgggatgttccggccggtttgagcttatcacccaagag
gagggtccaagtggatatggatttccattgaccacgttgccccacggactccccccttat
gctgaggagctgacatctgagctggagcagcgctttcttgacagtccagaatggcttccc
atccatcactttgaaaggtctcacaggttctggccccgtgagaaagacatccagtcactc
tttgaggtgaatgtcacacctgtgcactctacacttcaggctgagcgcaaccctaccaca
ggagagcttctaggtttcaaagaggcactagtggacaatatgggcttgtcagccaagaat
tctctgtcgttccagcgagcacctggtccccccgctgaagctctgcgaggcagtgccacc
aattatcccttctggccaggtgggatggatgaacctagcttggagcagatcaagactcaa
gatgacctggaagaggacatagattttcagaaagatctgctgacagtgccacctggctgg
aagaagggagtggagttcaccaaacaagagctcaaggcctcgtcagggctgctgaacttg
accaacctcttgggggccttggacacctttgatttgggagcctccagcgatgaagaaggc
aaggagaagaccgtggaagtggagaagaagaagaagaaagggaaggggaaaggggccaag
gaagaagagacacccccagcagaacccgcaccgcttcagagggcaaacagcctggaggaa
ttggtgctaaaggatacgtcgccaatccccaagtcagccacgcatcctgcctcggcccct
gctgccgccgccaccactgaaccccccaaagagcagtgggccatccctgtagatataagt
tcccctgtggatgacttctacaagcgaattcctgacccagctttcaagtggccttttgaa
ccagatgtcttccagaaacaggcaattcttcacttggagaagcatgattctgtatttgtc
gctgcccatacatctgctggaaagacggtggtggctgagtatgccattgccctgtcgcag
aagcacatgacacgcactatttatacgtccccaatcaaggctctttccaaccagaaattc
cgggatttcaagaacacctttggggatgtgggtttgttgacaggcgatgttcagctgcat
ccagatgcctcctgcctgatcatgacaacagaaatccttcgatctatgctctataacgga
tcagacgtcctcagagacttggaatgggtgatctttgatgaggtgcattacgttaacgac
tctgagcgtggtgtggtctgggaagaggtcctcatcatgctgccggaccacgtgaacatc
attttgctgagtgccaccgtccccaacaccctggagtttgctgactggattgggaggatc
aagcggaagaaaatctatgtgatcagcacactgaaacgccctgtcccactggagcattat
ttgtacactggcaacagccagaaaacccagaacgaactgttcctcctggttgatgcccgt
gggacatttcttaccaaggggtactacgatgccatagaagccaagaaggaacgggccagc
aagcattctcagacctttggggccaagcagcccatgcatccaggagctgggccagggcag
gacaagaacatttggctgtccctcattgacatgctgcgtaagaaggaccagctgcccgtg
gttgccttcacgttctctcgcaaccgctgcgacgacaatgcttccatgctaaccactgtc
gacctgaccacaacgactgagaaaagcgagatccatgtcttcttccggaagtgcatctcc
cgccttaagggcacagaccgccagttgcctcaggttcttcatatggtggacctcttgaaa
cgtggcatcggagtgcatcacagtggcatcctgcccatcctcaaggaggtggtggagatg
ctcttcagtaaggggctggtcaagattctttttgctaccgagacttttgccatgggtgtg
aacatgccggccaggactgtagtcttcgactccattcgtaaacatgatggtgccaacttc
cgggatctggtgccagctgagtacatccagatggcaggccgggctgggcgccgaggcctc
gacaccacagggatggtgattatcctgtgtaaaaaccaagtgcctgagatggccgacctt
catcggatgatgttgggcaaaccaacccagctgcagtcccagtttcgcctgacctacaca
atgatccttaacctgttgagagtggaagcccttcgagtagaggacatgatgaagaggagc
ttctctgagttccatacccggagggacagcaaggtctacgaacacaggattggccaactg
agcagcatcttggccaacatggagcctgtggatatggcaggacagcttggtgacttgcag
gaatattactccctggtccgagagctgaaggagactcgtgtacttatccagagacgaata
atggaatcggtgaatggactgaaggccctttctgtggggcgagtgatcgtagtgaaaaat
aaagagcacaagaatgccctaggagtgatcttgcaggtgtcttctgacactgccaaccga
gccttcagtgctttggtaatgtgtgagaagaacttgtcagatggggattcggctgcaagc
aaggagagtaatcttccctcctctccagaagtgcctttacctgatgaccttctgcacacc
aagctcttccttccagaagggccctgcggacacaccataaagaaactgggcccagctgat
atttcaggtatcacaaccaaaaccctgcgtgtcaatgctgagcgcatcatggaggatttc
aagaagcgacagatgcccaggttcaggaatgatccaccagggccatcagcagccacggcc
acccaggagctgctgcgtttggctgagggttctcccgagggcctcccactcctggatcca
gtgaatgaccttcagttgaaagacctggaggttgtggagggtgtgatgagggcccgtcac
ttggaggaggaactgccgggattccggtgtgtgcacagccctcgcttccatatggagttt
gtgcgatttagagaacgccaacaagtgctggaggagctggagcagctgcgcttcctgctg
tcggaccagtccctgctgctgctgccggagtatcaccagcgcgtccaggtcctgcgttcc
ctgggctacatcaacgaaggtggggccgtggaactcaaagggagtgtggcccgtcagatt
agcaaccatgagctgcttctgactcagctgctcctagacaacgccctgacggacctgcgg
ccagaagagattgtggccctgcttagctgtaccgtctgccaagtccgcacccaggtggag
ccacagctgccttcgatccttcagaagggcatagagcacatccgctcagtggctgaagag
attgccctgctgcagcgcaagtgtggcctgcaggagtcagtggaggacttcgtggagcag
tataagttcgggctggtggaggtggtctacgagtgggcccgtggcatgccatttgccgag
atcgcccgcctgacggatgtgcaggaagggatcattgtccgctgcatccagcgcttagat
gaaacctgccgagagatgcgcaatgcagcccgggtcaccggggagccaacgctgcacgcc
aagatggaggctgcttccaacatgatcaagagggacatagtctttgcggccagcctctac
acccagtga
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integrated database retrieval system
