Hemicordylus capensis (graceful crag lizard): 128346923
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Entry
128346923 CDS
T08891
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128346923 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hcg03041
]
128346923 (CDC40)
Spliceosome [BR:
hcg03041
]
Complex C
Other components
Step II factors
128346923 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
128346923
NCBI-ProteinID:
XP_053156728
LinkDB
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Position
1:332598320..332703480
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AA seq
582 aa
AA seq
DB search
MSAAIAALASYGGSDSDSDSGSDAEGRPKRSAQVAGGDAVLHLVSPPSAKPALLPVVDSA
PTVAVKEDVETGVHLDPTTKEVQYNPTFDTMFAPEFGPVNPFRTQQMAAPRNMLSGYTEP
AHINDFMFEQQRRTFATYGYALDPSIDDYEVSTKYIGSVEEAEKNQGLTVFETGQKKTEK
RKKFKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQRELDEITAKRQKKGKHEDDKPGEE
KTILHVKEMYDYQGRSYLHVPQDVGVNLRSAVPPEKCYLPKKQIHVWSGHTKGVSAVRLF
PLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNNAGSQFLSAAYDRYLK
LWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRNGEIVQEYDRH
LGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLA
CQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDADGKLNIWDW
KTTKLYSRLKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgccatcgctgcgctggcttcgtatggcggctccgattctgactctgactcg
ggctcggacgctgagggtaggcccaagcgctctgcgcaggttgccggcggggacgccgtg
ctgcaccttgtgtctcctccttctgccaaaccggcgttgctgcccgtggtggactcagcc
ccgacggtggctgtgaaggaagatgtggaaacaggagttcaccttgatccaactaccaag
gaagttcagtataatccaacctttgacaccatgtttgcacctgagtttgggccagtgaat
ccatttagaactcagcagatggctgcacctaggaatatgctttctggatatacagaacca
gcacacattaatgatttcatgtttgagcaacagagaagaacatttgcaacctatggatat
gcgctggatccctcaatagatgattatgaggtttctactaaatatattgggtctgttgaa
gaagctgagaagaaccaaggtctaactgtgtttgaaacgggacaaaagaaaacagaaaaa
aggaagaaattcaaagagaatgatgcatctaatattgatggcttcttgggaccatgggca
aaatacgttgatgaaaaggatgttgcgaaaccttcagaagaagagcagagggaactggat
gaaataaccgcaaagagacaaaagaaaggcaaacatgaagatgataaacccggagaagaa
aagaccattttgcatgtcaaagagatgtatgactatcaagggaggtcctatcttcatgtt
cctcaggatgttggcgttaacctacgttcagccgtaccccctgagaaatgctatcttcct
aagaaacaaatccatgtatggtctggacatacaaagggagtcagtgctgtgaggctgttt
cctctttctggccacctgctgctatcttgttccatggactgtaaaattaagctctgggaa
gtatatggagaacgaagatgcttacgtactttcattggacacagtaaagctgttagagat
atatgctttaacaatgctgggagccagtttctcagtgctgcatatgaccggtaccttaaa
ctttgggacactgaaacaggacagtgtatttcaagattcaccaacagaaaagttccttac
tgtgtgaaattcaatcctgatgaagataagcaaaatctttttgtggcaggaatgtcagat
aagaaaattgtacaatgggacattcgaaatggagagattgtacaagagtatgacaggcac
ttgggagctgtcaataccattgtgtttgtggatgagaacaggagatttgtgagcacatct
gatgacaagagcttaagagtatgggaatgggatattcccgtagatttcaagtacatagca
gaaccaagtatgcactcaatgccagcagtgacattatcaccaaatgggaaatggctggct
tgtcaatccatggacaatcagatactaatttttggagcacaaaacagattcaggctaaat
aaaaagaaaatcttcaagggtcatatggtggcaggctatgcttgtcaagtagatttttca
cctgacatgagctatgtgatatcaggtgatgcagatgggaaactgaacatctgggactgg
aagacaacaaaactctatagtagattaaaggcccatgacaaagtctgtataggtgcagtg
tggcacccacatgaaacatccaaggtgatcacatgtgggtgggatggtctcattaaactg
tgggactga
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