Hemicordylus capensis (graceful crag lizard): 128347030
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Entry
128347030 CDS
T08891
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hcg03036
]
128347030 (SHOC1)
Chromosome and associated proteins [BR:
hcg03036
]
Eukaryotic type
Meiosis-specific proteins
Others
128347030 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
TTR-52
WIYLD
Motif
Other DBs
NCBI-GeneID:
128347030
NCBI-ProteinID:
XP_053157008
LinkDB
All DBs
Position
2:complement(132251969..132343821)
Genome browser
AA seq
1535 aa
AA seq
DB search
MFAALKYHAVDYLYEKVSQQRFFFERLSIHIPSCLYKDKNYYHDGDFADDKYRRPWTRVS
VDSIQIVMNFSVLDLWKEYFYIEDFLEKKPISSIPINIHNEDIEVVPSSNPCSQCEPEDA
YLLIKDDSKQEFSDASHLQLNYVPVILKEQEEEDLYIEDELVFTDHLTQYAKLLPNLRTL
LSRLSIFRVQDPLLSSSGNSITEEDIFRECFTFKRSVASQVKRTALYEDVCKVTLSEEET
LVLPLELQSYKTSDLRLNPEIPTCLALKSLLQVAPEVIADESGSYKITSEDLAVKITPEI
EISAYCSTQEVCSSQNESELEFSELPSYTSFHARELEVPLTPPCSSGKVHVNSLYATLQS
EPVSPLSKSFFITESTKVHLEGLLWQSEKYQNTMSSLLLAELQTSVPTCQQLLVTELKKL
FSIHEDKSEFSTVEEDGWINLRENMAFPCILETLSTDLGDGDSFISTNVEQFSKIATFHL
QRWLEEKNSIAKNKVVSVGALDCGGTKDPCWSPQKKETFLPLPLGHSSGVHLHDENIEKQ
VTKDKLLHSETETPLHFGKHKDQENYQLKPSICKKVSVEPNSTLGDKKMISFEQPRKCGD
DFDLLSNFIMLRSKHMITQSEETNSVDIQEEVPVAKEESPAFETHDNPVVPHPAVPMETK
ENEEIVSIQIKASENQFEAYHILEATAAPVLKELLSLGMHNWRFATLNFDDTRFFLKQQE
KVISDTFKQGVTGTEDARDITVFKHAAILHLLVTVRDLLLTCSLNTALGYLCKAKYRYKD
FLGSSMDNIWRQLKIVQFAQQKEHKATPKITKLQFKMLKWVQSNTDEQNKVVIVTRMDFD
DEMDALIKTINTVPAGLKAVYLDSEKKGALLDSKNIISSLEKCSCVIVHNQHIGPDFPWT
HFSLVVEYNYSENSCWFDICKSLNISYITFVTALPETVEIEEVSPGNFGCVLLGVQIPYI
FLTSEGLLNMPEILQLLESKYNITFIERSCCEALQLFGSTDRYVVVTVDECTVIVMQNIE
ELNYEKSSDNIVLRLMVLSLQYSCCWIIFYSRERLNSQYILAGKTLHHLALIYAALVPFA
QKSEDFEVKVALTPGVEETALFIRQVADYSLMTSKRDPQEWLDKSWLAVLPSEAEKCLLT
FPCINPLVAQVMLKKSSSLEWLLSTTFDKLQELLPEVPERILKHFSNITSMYTLNPSTES
KPSEETVPLHTNMNTATSFCSQVPFSEVLLSSSQEHSPHDQYSRCFNKEEYSMPCSPSYY
QHESHAPLKPNARRILMASPVSYQADACSFQERDHNTEIEGQHCLPFLKHLETERRASSS
LPTLNNLGESTLSNFVTKMPPLGYNEGDTNFYLENCPQNGTCLSKVTRGPKLDVPVLMMN
PTYIDKQILHGVEKHPPVKQCNSSQDSTYSWYLVSNREDFPFLDSFLGEFGRTAYGRTAY
SSPEFQFEERFWDDKPCTQKMALSPSFYKEGSNPDRLFRIAGEYKRPNFLSSNQREQNVS
AAGLEFTQIPQLKKRRLTFEKDPGRSDGQTRLKFF
NT seq
4608 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcagccttgaaataccatgcagtagactatttatatgagaaagtttcccaacag
agatttttctttgaacggttatcaattcacatcccttcctgtttatacaaagataaaaat
tattatcatgatggagactttgcggatgataaatacaggagaccatggacaagagtttca
gttgattccattcaaattgtgatgaatttttctgtgcttgatctttggaaggaatatttc
tacatagaagatttcttggagaagaaacctatttcaagcattcccatcaatattcataat
gaagatattgaagttgttccgagttcaaatccttgttctcagtgtgagccagaagatgct
tatttgcttataaaggatgacagcaagcaagaatttagtgatgccagtcatttacagcta
aattatgtcccagtaatacttaaagaacaagaagaagaagatttgtatattgaagatgaa
cttgtttttactgaccatttgacccaatatgctaaattgctacctaatctgcgtaccctc
ttgagccggctcagcattttccgagtgcaggatccccttttaagttccagcggaaacagt
atcacagaggaggacatcttcagagagtgctttacattcaaaaggagtgtggcatctcaa
gtgaagaggacagcattgtatgaagatgtttgcaaagtgactttaagtgaagaggagaca
cttgtacttcctcttgagttacaatcctacaaaacatcagacctcagactgaacccagag
attccaacatgtttagcactgaaatctttattacaagtagctccggaagttatagcagat
gaaagtggaagttataaaataaccagtgaagatcttgcagtgaaaattacacctgagata
gaaatttcagcatattgctccacacaagaagtttgttccagtcaaaatgaaagtgaactg
gaattcagcgaattaccaagttacacttcattccatgctagggaattggaggtcccactg
actcctccatgcagctcagggaaggtgcatgtgaattcactgtatgcaacactacaatca
gaacctgtttcccccttaagtaaaagtttttttattacagaatccactaaagtgcactta
gaaggtctgttatggcagtcagaaaaataccaaaataccatgagttcccttttacttgca
gagcttcagacttctgtgcctacatgtcaacagcttctggttacagaactgaaaaaactc
ttttctatacatgaagacaagtcagaattcagcacagtggaagaagatgggtggattaat
ttaagagaaaatatggcttttccttgtattttagaaacactgagcacagatttgggagat
ggggacagctttatttccacgaatgtagagcaattctcaaaaattgccacctttcattta
cagagatggctcgaagagaagaattccattgctaaaaataaagtggtgtctgttggtgcc
cttgactgtggtggaacaaaggatccttgttggtctcctcagaagaaagaaacattcctt
ccactacccttggggcattcatcaggtgtacatctacatgatgaaaatattgaaaaacaa
gttacaaaagacaaactactacacagtgaaacagaaacaccattgcattttggaaaacac
aaagatcaagaaaattatcaattgaaaccatccatctgcaaaaaggtgtctgttgaacca
aacagcacattaggagacaaaaagatgatatcttttgaacaacctagaaaatgtggagat
gattttgatcttctgagcaatttcatcatgttgagatctaaacatatgatcacccaaagt
gaggaaacaaacagtgtggatattcaagaagaagttccagttgctaaggaagagagccca
gcatttgaaacccatgacaatcctgttgtccctcatcctgcagtccctatggaaacaaag
gaaaatgaagaaatcgtctccatacagattaaagcatcagagaaccagtttgaggcatat
catattcttgaagcaacagcggctcctgttttgaaagaactcctgagtcttggcatgcat
aactggagatttgctacccttaattttgatgacaccagatttttcttaaaacagcaagag
aaagtgatcagcgatacttttaaacaaggtgtgacaggtacagaagatgcaagagatatt
acagtattcaaacatgctgctattctgcatttgctggtaacggttcgagacctcttacta
acatgtagcttgaacactgcattaggatatttgtgcaaggcaaaatataggtataaggac
ttcctaggctctagcatggataatatttggagacagctgaagattgtgcagtttgcccag
cagaaggagcataaagccactccgaagataaccaagctgcagttcaaaatgctaaagtgg
gtgcagagcaatacagatgagcagaataaggtcgtaatcgtgactaggatggattttgat
gatgaaatggatgctctaatcaagacaattaatacagtgccagcaggtttgaaggctgtg
tatttggattcagaaaaaaaaggagctttgctagacagcaaaaatatcataagtagtttg
gagaaatgttcctgcgtgattgtacataatcagcacattggacccgactttccttggact
catttttcattagtggtggagtataactattcagaaaattcctgctggtttgatatttgc
aaaagtctgaatatctcttatataacttttgtaacagctctcccagaaactgttgagata
gaagaggtttctccgggtaattttggatgtgtacttcttggggttcagattccctatatt
ttcctgacatctgagggacttctcaacatgccagaaattcttcagttactggagtccaag
tacaatattacatttattgagagaagctgctgtgaggcattacagttatttggaagcaca
gaccgttacgttgtggtgactgtagatgaatgcactgtcatcgttatgcagaacatagaa
gaactcaattatgaaaagtcctctgataatattgtgttaagattgatggtgttatcactc
cagtatagctgctgttggattattttttactcgagggaaaggctgaattctcagtatatc
ttagctggaaagactctgcatcacctagccttaatttatgctgccttggttccatttgcc
cagaagtcagaagactttgaagtgaaggtggctcttacaccaggagttgaagagacagca
ctcttcattcgtcaggttgctgactacagtctgatgacttctaaaagagatcctcaggag
tggctggacaaatcctggctggctgtcttgccatcagaggcagagaaatgcttgcttaca
tttccatgcataaaccctcttgtggctcaagtcatgttaaagaaaagttcttcattggag
tggctgctgtcaacaacttttgacaaacttcaggaacttttgcctgaagtgccagaaagg
attttaaagcactttagcaatatcacatcaatgtacaccttaaatccttcaactgaatca
aaaccttcagaagaaacagtgccacttcatactaacatgaacactgccaccagcttctgc
tctcaagttcctttttctgaggttttgctctccagttctcaagaacacagtccacatgat
caatattcaagatgttttaataaagaagagtacagcatgccttgttccccgagttactac
cagcatgagtctcatgctcctctgaaaccaaatgcaaggcgcatattaatggcatctcca
gtatcttatcaagcagatgcctgttcctttcaagaaagagatcataatacagagatagag
ggccaacattgtctcccatttctgaaacatttggaaacagagagaagagcatcttcatcc
ctcccaacactgaacaatttgggggaatctacccttagtaattttgtaaccaaaatgcca
cctctgggatacaatgaaggtgacactaacttttatcttgaaaattgcccacaaaatgga
acatgcctttcaaaagtaacaagaggaccaaagctggatgtcccagtcctgatgatgaac
ccaacctatatcgataaacaaattttacatggggtggaaaagcaccctcctgtgaaacag
tgtaactctagccaagattccacatattcttggtaccttgtgtctaacagagaagacttt
ccattcctagatagttttctaggagaatttggcaggacagcatatggcaggacagcatat
agcagtccagaatttcagtttgaggagaggttctgggatgacaaaccatgcacacagaaa
atggctttatctccaagtttctacaaagaagggtccaatccagatagattatttaggata
gctggagaatataaaagaccaaatttcttatcgtctaatcaaagagaacaaaatgtttca
gcagcaggtttagaattcacacaaataccacagcttaaaaaaagacgtctaacatttgaa
aaagatcctgggagaagtgatgggcaaacacgtcttaaattcttttaa
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