Hemicordylus capensis (graceful crag lizard): 128349774
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Entry
128349774 CDS
T08891
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg04382
Cornified envelope formation
hcg04510
Focal adhesion
hcg04512
ECM-receptor interaction
hcg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128349774 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128349774 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128349774 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128349774 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hcg04147
]
128349774 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
hcg00536
]
128349774 (COL4A4)
Exosome [BR:
hcg04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128349774 (COL4A4)
Glycosaminoglycan binding proteins [BR:
hcg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128349774 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128349774
NCBI-ProteinID:
XP_053162676
LinkDB
All DBs
Position
3:complement(311367219..311466842)
Genome browser
AA seq
1679 aa
AA seq
DB search
MVSVKWTKLIITTARWLVVIVCSLQPVYGGEYAYIGPCGGRDCSVCQCFPEKGSRGQPGH
VGPQGAIGALGPIGPIGLPGEKGQQGDIGLPGAAGERGNKGPTGVPGFSGLDGAPGLPGL
EGPRGKPGLDGCNGSRGEPGFPGEAGHVGQRGSFGLPGQKGEKGNSIYISEFVRGAPGDR
GDPGSRGMPGSRGERGPRGPLGFPGQPGLQGAPGRPGLPGEQGYPGTGVEGQKGEPGDVG
PPGSSGQPLLVGPPGSQLLKGEKGIKGMPGSIGSKGLPGRKGAFGNGQKGEKGIPGFPGM
RGSPGSYGSFGFPGNKGETGIAGFPGQDGFSGIKGDTGDIGLTGPPGPRGTPRVGIKGLE
GDLGNPGASGDVGADGFPGLSGAKGRPGEDGASLPGPKGAQGVQGPQGSQGDPGPPGISE
TAPGRPGSPGSPGFPGAPGNQGLPGPPGVTCNGRGAPGQPGSQGLRGPPGDRGEKGERGG
PGTCLCGPGPYGIPGIRGPQGSPGRKGEVGLPGKYGRKGDPGLPGAIGQPGPLGIRGSYG
QTGEKGDKGDPARIRIKGIKGQRGPQGEPGLPGENGIDGKNGEPGLPGEKGLQGRDGTSI
PGDKGFPGAPGLPGSRGPIGPSGFGIPGPQGVQGLPGDSGSPGIRGPPGPKGQKGSSPQY
GTTYAGNPGPPGFKGLSGPKGLRGPPGRPGPNGFDGPKGQPGRQGISGRPGPEGFRGEDG
DPGEKGESGSRLDGAPGLPGPPGLESQKGVPGDTSYGPPGITGSRGLPGLPGLPGIRGDP
GFTGHQGQPGTPGFPGAKGLSGRKGDRGSPGYPGAPGLPCDKGLRGPPGPPGSFGPPGSP
GLQGFKGAQGDMGAPGPAGMKGMPGAPGTQGPAGLPGLRGNTGLPGEDGLPGLPGQKGNK
GSQGMQGFPGLPGNKGEMGAPGGKGEQGQTGLRGPPGERGFKGSKGEPGPQGEDGRIFVL
VEKGQNGEPGLPGEEGLLGTQGDKGSPGYRGIPGLPGRSGLPGIQQGERGDTGQAGFQGL
QGFPGPPGLVGIIGFQGLQGDQGAQGLSGFPGNPGSDGAKGSKGSRGDPAILLGQPGKKG
PAGDLGLPGLDGLPGDQGATGDQGRLGRQGPKGLPGDQGTPGFPGAQGAEGLAGTPGEPG
NPGVSGPPGLPGLPGLPGRKGLLGLPGLNGLNGLQGQKGLPGAPGIPSETGLPGCTGEPG
PKGNRGEPGLPGILRLGPPGERGPSGLPGKAGASGPAGPRGQHSEPALPGPPGDQGPPGL
DGIRGLPGKPGPPGKTIFVKGDPGDCGTPGLPGVAGPPGKPGTKGVPGNLGGEGSKGLMG
YPGPQGPPGVPGEPGDQGYRGTAGYVGPKGDPGEPGKLDYSLCPKIPGPPGILGARGSPG
PMGLIGPKGFPGPPGKKGQEGLLGLPGQDGLPGPPGPIGDQGEIGVQGYTGQQGPPGQTG
IPGPPGPEIRAASGFLLVLHSQSDREPLCPEGMPKLWTGYSLLYLEGQEKAHNQDLGLAG
SCLPVFSTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPMMPLSGDEIQPYISRCTVCEA
PSQAVAVHSQDQSIPPCPLNWRSLWIGYSFLMHTGSGDQGGGQSLMSTGSCLEDFRASPF
IECQGQRGTCQFFANEYSFWLTTVNPDLQFATAPLPGILKDGQEQRRNVGRCQVCMKHS
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggtttctgtaaaatggactaaacttattatcacaactgcacggtggctggtggtaatt
gtttgttcactgcaaccagtttatgggggtgaatatgcatatattggcccttgtggtgga
cgggattgctcagtttgtcaatgctttcctgaaaaaggctcaagaggtcagcctggccat
gtggggccccagggtgcaattggtgctttgggccccataggacccattggtttgccagga
gaaaaaggtcagcaaggtgatattggtcttcctggggcagctggagaaagaggcaataag
ggtcctactggtgttccaggattttccggtttagatggtgcacctggattgccaggactc
gaaggtcccagaggcaagcccggcttggatggatgtaatggatcaaggggggaacctgga
tttcctggagaggctggacacgttggacaaagaggttcatttggtcttcctgggcaaaaa
ggagagaaaggaaattccatatatatttctgagtttgtcagaggagctcctggagataga
ggggatcccggatcccgtggcatgcctggctctcgaggagaaagggggccaagaggtcca
cttggatttccaggacaaccaggcttacagggtgctcccggtcgccctggtttgccaggc
gaacagggatatccaggtactggagtggaaggtcaaaaaggggagccgggtgatgtggga
cctcctggatcttctgggcagccattattggttggacctcctggttctcagctgttaaaa
ggagaaaagggcataaaaggaatgcctggatccattggctccaaaggactgcctggccgc
aaaggtgcatttggaaatggacagaagggtgaaaaggggattcctggctttcctggaatg
cggggaagtcctggttcttacggatcttttggttttccaggaaacaagggtgagactgga
attgctggatttcctggacaagatggcttttccggcataaagggagacactggagatata
gggctaacaggtccaccaggacctcgaggaacaccacgcgttggaataaaaggacttgaa
ggagatcttggaaaccctggagcttctggagatgtaggagcagatgggttcccaggcctc
tcaggagctaaaggaaggccaggggaagatggagccagcctcccaggtcccaaaggtgca
caaggagtacaaggtcctcaaggctctcaaggtgaccccggtcctcctggtatatctgaa
acagctccaggaaggccaggatctccaggatcaccaggttttccaggagcaccgggaaac
cagggcttgcctggaccacctggtgtgacttgtaatgggagaggggcccctggacaacct
ggatcccaaggcctgagggggccaccaggagatagaggtgaaaaaggagagagagggggt
ccaggtacctgcttatgtggccctggcccatatggcatacctggaatacgaggcccacaa
ggtagtccagggagaaaaggagaagtgggattacctggaaaatatggaagaaaaggagat
ccaggtttacctggtgctataggacaaccaggtcccctaggaatacgaggttcatatggt
cagactggtgagaaaggagataagggtgacccagccagaataaggatcaaagggataaaa
ggacaaagaggtccccaaggggaacctggacttccaggagagaatggcattgatggcaag
aatggagagccaggattgccaggtgaaaaagggcttcagggtcgtgatggaacatcaata
ccaggtgataagggatttcctggtgcccctggacttcctggctcaagaggccctattgga
ccatcaggttttggaattccaggtccacaaggggtccagggcctacctggggattcagga
agcccaggtataagaggaccacctggaccaaagggtcagaaaggtagtagtcctcagtat
ggaacaacctatgccgggaatccaggcccacctggttttaaaggtttgtcaggtccaaaa
ggattaagaggaccacctgggcgacctggccccaatggttttgatggcccaaaaggacaa
ccaggcagacaaggaatatcaggcaggcctggtccagaaggtttcaggggtgaggatggt
gacccaggtgagaaaggtgaaagtggttccaggctggatggtgctccaggattgcctggc
cctcctgggcttgaaagccagaagggtgttccaggtgacaccagttatgggcctccagga
attacaggcagcagaggtcttccaggcttaccaggattgccaggcataagaggtgaccca
ggttttactgggcatcaaggacagcccggcacaccaggatttccaggagctaaaggtctt
agtggtaggaaaggtgatagaggatccccaggatatcctggtgcacctggactaccttgt
gacaaaggcttgcggggccctccaggaccaccaggctcttttggaccaccagggtctcca
ggtttacagggcttcaaaggtgcacagggggatatgggtgccccaggcccagctggaatg
aaaggcatgccaggagctcctggaactcaggggccagctggccttccaggcttaagagga
aacacaggccttccaggcgaggatggattgccaggcctcccaggacaaaaaggaaacaaa
gggtcccagggtatgcaaggtttcccaggactaccaggaaataaaggagagatgggagct
cctggtggaaaaggtgaacaaggacaaacaggcctacgtggtcctccaggagaacgcgga
tttaaaggctccaaaggtgaaccaggacctcaaggagaagatggccgtatttttgtatta
gtagagaaaggacaaaatggggaaccaggccttcctggtgaggagggtttactgggaaca
cagggtgacaaaggcagccctggatatagaggaatcccaggattgcctggcagaagtgga
cttccaggaattcagcaaggtgaacgtggtgatactgggcaggctggttttcaagggtta
caaggcttccctgggcctccaggactggtgggaataattggttttcaaggactgcagggt
gatcagggtgctcagggattgtcaggttttccgggtaatccaggttcagatggtgcaaag
ggatctaaaggtagtagaggtgacccagctattctccttggccagcctggtaaaaaaggt
cctgcaggagacctaggattgccaggacttgatggcttgccaggagaccaaggtgcaaca
ggtgatcaagggagactaggaagacaggggccaaaaggcttgcccggagaccaaggaaca
cctggcttcccaggtgctcagggagctgaaggattagcaggcactccaggtgaaccaggt
aatcctggtgtttcaggacccccaggtttgccaggattaccaggtttgccaggcagaaaa
ggccttttggggttgccaggtttaaatggcctgaatggactacagggtcaaaaaggttta
ccaggagctccaggtattccaagtgaaacaggtctcccggggtgtacaggagaacctgga
ccaaaaggcaacagaggagaacctggcctaccaggaattttacgtctgggccctcctgga
gaaagaggcccatcaggtcttcctggcaaagccggtgcttctgggcctgccggtcctagg
ggtcagcattctgaacctgcacttcctgggcctccaggtgatcaaggcccccctggttta
gatggcattagaggtcttcctggcaaacctggccctccgggaaagactatatttgttaaa
ggagatccaggtgactgtgggactcctggtctacctggggttgcgggcccacctgggaaa
ccgggaactaaaggtgttccaggtaatctaggaggagaaggctcaaaaggtctgatggga
taccctggaccacaggggcctcccggtgttcctggggagcctggggatcaaggttatcga
ggaacagctggttatgtgggtcccaaaggtgacccaggagaacctggaaaacttgattac
tccttatgtcccaagattccgggacctcctggaatattaggcgcaagaggatcacctggt
cccatgggattaataggaccaaaaggtttccctggtcccccaggaaaaaaaggacaagaa
ggtttattaggtctcccaggtcaggatggcttgcctgggccaccaggacccattggtgat
caaggtgaaataggagtacaaggatacacagggcaacaaggtcctccaggccaaactggg
attccagggccgccggggcctgaaataagagctgctagtggatttctgcttgttcttcat
agtcaatcagaccgggaaccactttgcccagaaggaatgccaaaattgtggactggttac
agtcttctttatctcgaagggcaggagaaggcccataatcaagatcttggtctagccgga
tcttgtctccctgtattcagcacaatgccctttgcctattgcaatatcaaccaggtttgc
tattatgcaagtcgaaatgataaatcttattggctgtcaagtgctgctcctttacccatg
atgcccctctctggtgatgaaatacaaccctacatcagcagatgtactgtatgtgaagct
ccatcacaagctgttgcagttcatagtcaagatcaatccattcctccctgcccattgaac
tggagaagtctttggataggctattcatttttaatgcacactggatctggtgaccaggga
ggtggacagtccctcatgtcaactgggagctgccttgaagacttcagagcatcacctttc
attgagtgccagggtcagcgaggaacatgtcaattttttgccaatgaatacagcttctgg
ctaaccactgtgaacccagacctgcagtttgcaacagcccctctcccagggattcttaaa
gatgggcaagaacaacgccgaaatgtaggcaggtgtcaggtctgcatgaaacatagctaa
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