Hemicordylus capensis (graceful crag lizard): 128351354
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Entry
128351354 CDS
T08891
Symbol
PCDH9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
128351354 (PCDH9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hcg01009
]
128351354 (PCDH9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hcg04515
]
128351354 (PCDH9)
Protein phosphatases and associated proteins [BR:
hcg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128351354 (PCDH9)
Cell adhesion molecules [BR:
hcg04515
]
Cadherins
Protocadherins
128351354 (PCDH9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Big_9
MAP17
Cadherin_4
V_ATPase_I
EphA2_TM
RCR
DUF6249
7tm_3
DUF6377
Motif
Other DBs
NCBI-GeneID:
128351354
NCBI-ProteinID:
XP_053166809
LinkDB
All DBs
Position
3:174568943..175687721
Genome browser
AA seq
1225 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAVAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSTTGEIFTTSNRIDRERLCAGAAYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKESQVEVHVPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRALDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNVDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDADVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFSQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSSYTFDVKAIDGGQPPRSSTAK
VTINVMDVNDNSPVVIYPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPTLTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPEDAVHEPI
NGTISLPAELEEQSIGRFDWGTAPPTTFKPNSPDLAKHYKSASPQSAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQALNCGDMP
KYLWEIWVPDKPWVSQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLISHPLPLVQPQDE
FYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPTLGSYQ
QPKSPLSTFAPQKEWVKKDKLVNGHTLTRTWKEDSNRNQFSDRKQFGSGEGHFNPGNHMT
DIPLANLKSYKQASGAVESPKENQL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggctgccctgattgcctgtttaaggctggattct
gctgtagctcaagaacttatttacacaatccgagaggagctgccagaaaacgtccccatt
gggaacataccaaaggatttgaacatttctcacatcaatgctgccacaggaaccagcgcg
agtcttgtctacagactggtctccaaagcaggggatgcccctttggtcaaagtatccagc
accacaggggagatctttaccacctccaacaggattgacagagaacggctctgtgctgga
gctgcctatgctgaagaaaacgagtgcttcttcgaactagaggttgtgattctccccaat
gacttttttcggttgatcaagatcaaaatcattgtgaaggataccaatgacaatgccccc
atgtttccatccccggtcatcaacatctccatacccgaaaacactctgatcaacagccgc
tttccaatcccctcagccacagatcctgacaccggtttcaatggggtgcagcactatgaa
ctactgaatgggcaaagtgtctttgggctggatattgtggaaactccagaaggggagaaa
tggcctcagctgattgtgcagcagaacttggacagagagcagaaagacacctatgtgatg
aaaatcaaagttgaggatggaggaaccccccagaaaagcagcactgccatcctccaggtc
acagtaagtgatgtcaatgacaacaggccagtctttaaagagagtcaggtggaggttcac
gtcccagagaatgcccctgtagggacctcggtcattcagcttcatgccacagatgcagat
ataggaagcaatgcagaaatcagatatatttttggtgcccaggttgctcctgcaactaaa
agactctttgctttaaacaacaccactgggctgattacagttcagagggccttagaccga
gaagagactgctattcacaaggtgacagtgctggccagtgatggtagctctacacctgcc
cgggcaactgttaccatcaatgtgactgatgttaatgataacccccctaacgtagacctc
aggtacattataagtcccatcaatggcacagtgtacttatctgagaaagatcctgtcaat
accaagattgccctaattacagtctcagataaggatgctgacgtgaatggcaaagtgatc
tgtttcattgagagagaggtgccgtttcacttgaaggccgtttacgacaaccagtacttg
ttagagacctcctccctgctggactatgagggcaccaaagaattcagctttaaaatagtt
gcctctgattctggcaagcccagcttgaaccagactgccctggtaagagttaagctggag
gatgaaaatgacaaccctcccattttcagccagcctgtaattgagctgtcggtttccgaa
aacaaccgccgtggtctgtacttaacaactattagtgccacggatgaggacagtgggaaa
aatgcagacattgtttatcagcttggccccaacgcctccttttttgatctggatcgaaag
acaggggttttgacagcctcccgggtctttgacagagaagagcaggagaggttcattttt
actgttacggcccgagacaacgggacacctcccctgcaaagtcaagctgctgtaattgtt
actgtcctggatgagaatgacaacagtcctaaattcactcataatcactttcagtttttt
gtgtccgagaacttaccaaagtatagcactgttggcgtgatcacggtgaccgatgcagat
gcaggcgagaataaagctgtgaccctttccatcctaaatgacaatgagaactttgttctg
gatccttactctggagttataaagtcaaatgtttcttttgatcgagagcagcagagttcc
tatacatttgatgtcaaggccattgatggaggacagccgcctcgttcttctaccgcaaag
gtcaccatcaatgtcatggatgttaatgacaacagccctgtggtcatctacccaccttct
aacacttcttttaagctggtgcctctctcggctatccctggctctgtagtggctgaagtg
tttgcagttgacattgacaccgggatgaacgctgaacttaaatatacaattgttagtgga
aacaacaaaggtttatttcgtattgatccggtgacaggtaacataaccttggaagaaaaa
cctactcttactgatgtggggctgcatcggctagtggtcaacattagtgatctgggttat
cctaaatccctgcatactcttgtccttgtgtttttgtatgtcaacgacacagcgggaaat
gcctcttatatttatgacttgatccgcaggactatggaaacgcccttggatcgaaacatc
ggggacagcagccagccctatcagaatgaggactaccttacaatcatgattgctattgtt
gcaggtgccatggttgtcattgtggtgatatttgtcactgttctggtccgctgccgccat
gcttccaggttcaaagctgcccagaggagcaagcaaggtgccgagtggatgtctcccaat
caggagaacaaacagaacaagaaaaagaagcggaagaaaaggaagtctcctaagagttcc
ctgttaaattttgttaccattgaggaatccaaacctgaggatgcagttcatgaacctatc
aacgggacaattagcctaccagctgagctggaggagcaaagtataggaagatttgactgg
ggcactgcaccacccaccacctttaagcctaacagccctgatcttgctaagcattacaaa
tctgcctctccacagtccgctttccatcttaagcctgacactcctgtctcggtgaaaaaa
catcacgtgattcaggaactccctttggacaacacctttgttgggggttgtgacaccctt
tccaaacgctcttccactagttcagatcacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggccccttgcacaccagacaggcactgaattgtggagatatgccg
aagtacttgtgggagatttgggtacctgacaaaccatgggtgtcccagcgccgtgttacg
tttcacctcccagatggctcccaggaaagctgcagtgacagtggtctaggagatcatgag
cctgtgggtagtggaaccctgatctcacaccctctccctctggttcagccgcaggacgaa
ttctacgaccaggcctcaccggacaagaggaccgaagctgatggcaactctgatcccaac
tctgatggacctcttggccctcgaggattagctgaagctaccgagatgtgcactcaagaa
tgcctggtgctgggtcattcagacaactgctggatgcctcccacattgggttcataccag
cagccaaagtctccactctccacctttgcacctcagaaagaatgggtaaagaaagacaaa
ctggtgaatggacacacgttgacaagaacctggaaagaagatagcaacagaaaccagttc
agtgaccgaaagcaatttggttcgggtgaaggccatttcaaccctggcaatcacatgact
gacattcctttggctaacttgaagtcctataaacaagcctcaggagcagtggagagtcca
aaggagaaccagctataa
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