Hemicordylus capensis (graceful crag lizard): 128351877
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Entry
128351877 CDS
T08891
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hcg03009
]
128351877 (PDCD11)
Ribosome biogenesis [BR:
hcg03009
]
Eukaryotic type
90S particles
Other 90S particles
128351877 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
OB_RRP5_4th
Suf
OB_RRP5
HAT_PRP39_N
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
ARM_TT21
TPR_CcmH_CycH
TPR_15
ARM_TT21_5th
DUF7017
HAT_Syf1_M
TRAM
Motif
Other DBs
NCBI-GeneID:
128351877
NCBI-ProteinID:
XP_053167847
LinkDB
All DBs
Position
3:complement(282625283..282682793)
Genome browser
AA seq
1817 aa
AA seq
DB search
MSSVEENFPRGGTQTKAPKRKAARPPSVDQDNLFKTQDEDRTQKRKRNIQDRTKPKKFLK
SEKKIIVKTNAKDFELLTAESLTEGMLLLGCVKESNQLELVISLPNGLIGFVQVTRICDA
YNKMLNEQVAKDEHLADLNPLSDLFSPGMLLRCSVVSIEKTATGHQNIQLTINPKDVNKA
LNTAALRPGMLLSGCISSVEDHGYLIDIGIKAAKAFLPRQKAQSYLQSTNKGAELHIGQY
LNCLIEEVKNNGRIIRLTINQLEIAAAIATEEQNWALNNLLPGLVVKAQIQEVTPLGLSL
SFLSSFTGIVDFMHLGSAKARNYTPSQMVKACILSIEPSSKAIHLSLRRVFLQPGIQLGQ
LSSDRIGVILADSRVKTFHKKVGATFILDDGTLGFAHLKHLSDSSNSFRPEAFKPGSKHK
CRIIDYSLMDDLPLLSLKQRILDARFLRYHDVHPGQVVEGTVLALKPFGMQVKVTEHIKG
LVPCLHLADVLLKNPEKKYSVGSTVKCRVLTSNPEERKLILTLKRTLVDSKLPVLASYAG
AKPGMITHGFVVCAREFGCIVKFCNDIKGLVPKNELGTEPLTVPQEAFSEGQVVKVMVLK
CEPEQERLLLSFKLTDNALAENSTGKVFSKKREITYETGQMVDVSILKKKEGGLEVTILP
DNVSAYIPMMHLSDHVSNCKLWWHWLKENDVLHRVICLHDKGGHITLSRKPAVISAVEEE
QVVKSFSDLEPGLLLTGYVRNIMPYGVFVEFPYGLTGLVPKSAMSDKFVTDPKDHFVIGQ
TVIAKVTSTDEEKQRILLSLKVSDCSSEDSVSESFSLLNQYFNELQEIKSIMCKRDDSSV
GQRLCELNLGQKLDLVVHDIKTDGSALFSGTCVSGLTVIATHSHLGGKSVVPGEKARAVV
LYIDSLKSKVCVSLRDELLSPKPKKLTKNSQHPAIVQYVAMEHAVVSLVGTGQLLAIPVA
SHFNDTFRFDSEKLKVGQSVTVVLKTEQEADHGILLAAQSPTKRKNMIRSRHESETLEDT
VSMVKHSLCLGDVVKGTVKSVKPTHALVAIDDKLTGSIHASQILDDVPIGTFPTSKLKVG
QEVSARVIGGRDIRTHRYLPITHPHFTHTFPELSVRPSELNGESNTALGPEDEKTLTPFK
PGQMVTCFIKKYNAIKKWLEVEISPNVRGRVPQLLLSLNPKVLKYADKNFKNGQAVTAMV
TGSDVTETKLCLSLTGVHSLEKGTITLGCVRKVIQFTGLIIALPFGKTGKVSLFHVSDSY
AEQPLENFSIGKIVRCCVISNKDNTIEVSLRQSRVNPKSHSKVEDPEITCLDNVQKGQFV
KGYVKSITLSGIFFGLSDTVVGRIQLKHITSLFVPDQSLYTKYIHVGQFLIAKVLSVNKE
ENHVELSILPEDTGKSSIIPESLCVPRNEVNTSTKKLRKRKRENSESVQEVKPKRKRTRC
TDDNDSGVEVYCREEEEEEEEKMCEKKSKGREAPRLKVSTSFIWEESLNVLDTIMLKPKE
QSSDTEEEDDPQSMVKKQTKKKKELEKQRAEKELSKLETALMDPNWQPQTADDFDRLVLG
NPDSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGTE
EALMKVFERAIQYNEPLKVFQQLADIYTGSEKYKQADDLYNAMLKRFRQEKSVWVKYATF
LLKRGLVEAAHRLLPRALKCLPDKEHVDVISKLAQLEFHFGDPEHAKAIFENTMSTYPKR
TDIWSVYIDMMIKHGTQKEVRDIFERVIHLSLAAKKMKFFFKRYLEYEKKYGTPETVQAV
KSAALEYVESKRSLAES
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgtagaagagaacttccctcgaggtggcacacaaacaaaagcaccaaaaaga
aaagcagccaggccaccatcagtagaccaggataatttattcaaaacacaagatgaagac
aggactcagaagagaaagagaaatatccaagatcgaacaaagccaaaaaagtttctaaag
tctgagaagaaaattattgtaaaaaccaatgctaaggattttgaacttctgacagctgag
tctctcacagaggggatgttgctcttaggttgtgtgaaagagtctaatcagttggagctg
gtgatcagtttgccaaatggactcattggatttgttcaagtgacacgcatatgtgatgcc
tataacaaaatgctgaatgagcaggtggccaaagatgaacacttagcggatctgaaccct
ctttcggacctgttctcaccaggaatgctgctcagatgttctgtggtcagcatagagaaa
actgccacaggacatcaaaatatacagctaacgattaatcccaaagatgtcaacaaggct
ttgaacactgcagctctaagaccaggcatgctactctctggatgcatctctagcgtggaa
gatcatggctacctcattgacataggcatcaaggcagcaaaggcatttctgcctcgtcag
aaagcccaaagctatctccagtcaaccaacaaaggtgctgaactgcacataggccaatac
ctgaactgccttattgaagaagttaagaacaatgggagaataatccgcttgaccatcaac
cagttggagattgctgcagccattgcaacagaagaacaaaactgggcactaaacaacttg
ctacctggactggtggtgaaagcccagattcaggaggtgactcctctcggactttctttg
agttttctctcttcttttactggaattgtggacttcatgcacttgggttctgcaaaagca
agaaactacacaccaagtcagatggtgaaagcctgcattctctctattgaacccagctcc
aaagcaatacacctctctctgcgccgagttttcctccagcctggcatccaacttggtcaa
ctctccagtgatcggattggtgtgattttggcagattcaagagtgaagacttttcacaaa
aaagttggtgccaccttcatcttggatgatggcactctaggttttgcacatctaaagcat
ctttcagattcgtcaaactctttcagacccgaggcatttaagcctggaagcaagcataaa
tgccgaatcattgactatagtcttatggatgatctgccgttgttgtcactcaaacaacgt
attcttgatgctcgatttctgagataccatgatgtccatcctgggcaggtggtagagggc
acagtgttggctctaaagccctttggcatgcaagtaaaggtgactgaacatatcaagggt
ctggtcccttgcctgcatctggcagatgtgcttctgaaaaatccagagaagaaatacagt
gtggggtccactgtcaagtgccgggtgcttacctccaatcctgaagaaaggaagctcata
ctgactcttaagagaacacttgttgattccaaactccctgtccttgccagttatgcaggt
gcaaagccaggcatgatcacccatggctttgttgtgtgtgctagagagtttggctgtatt
gtaaagttctgcaatgatataaaaggcctggtccccaagaatgagcttggtacggaaccc
ctgactgttcctcaagaagccttctctgaaggccaagtggtcaaagttatggtcttaaag
tgtgagcctgagcaggagagattgctgctctctttcaagctgacagataatgctcttgct
gagaacagtacaggaaaagtgttttcaaagaagcgagaaataacgtatgaaactggacag
atggttgatgtgagcattctgaagaagaaggaaggtggcctagaggttacaatcttgcca
gacaatgtttctgcctacattcctatgatgcacctctctgaccatgtctccaactgcaaa
ttgtggtggcactggctcaaagaaaatgatgtcctccacagggttatatgcctccatgac
aagggaggacatattaccttgagcaggaagccagcagtgatttcagctgtggaggaagaa
caggtggtgaagagcttctctgaccttgagcctggattgctgctgactggctatgtgaga
aacattatgccctatggtgtgtttgtggagttcccgtatggtttgacaggtctggtgccc
aagtcggcaatgagtgacaagtttgtaacagaccccaaagaccattttgtgataggtcag
actgtgattgccaaggtgaccagcactgatgaagagaagcagcgcatcctgctgtccctg
aaggtgtctgactgctcctctgaagactctgtatctgagagcttctccttgctgaatcag
tactttaatgagcttcaggagattaagagcatcatgtgtaaaagagatgattccagtgtg
gggcagagactctgtgaattaaatcttgggcagaagctggacctggtggttcatgatatc
aagacagatggttcagcactgttcagtggcacttgtgtttctgggctgactgtaatagcc
actcacagccaccttggaggcaaaagtgttgttccgggagaaaaggcaagagctgtggtt
ctctacattgattccctcaaatcaaaggtctgtgtgtctctccgtgatgaattgctgtct
cccaaacccaagaagttgaccaagaactcccaacatccagctattgtgcagtatgtggct
atggagcatgcagttgtttcactggtaggaacaggtcagctgcttgccatccctgtggcc
tcccacttcaatgacaccttccggtttgattctgaaaaactgaaggtgggtcagtcagtc
acagtggttctgaaaacggaacaagaagctgaccatgggatcttacttgctgcgcaaagt
ccaacaaagagaaagaatatgatcaggtcacgacatgaatctgagacgctagaagacaca
gtgtctatggtgaaacattcgctgtgtttgggagatgtggtcaaaggaactgtgaaatct
gtcaaacctacacatgccttagtggcaattgatgataaattaacaggctccattcatgca
tcccagattctggatgatgttcccataggtacttttccaacatcaaagctaaaagttggg
caggaggtatctgctcgggtcattggaggcagagacattagaactcacagatacttgccc
atcactcaccctcactttacccataccttcccagaactcagtgtccgaccaagtgagctg
aatggggaaagcaacacagccctgggccctgaagatgaaaagacgttaacaccctttaag
cctgggcagatggtgacatgctttattaagaagtacaatgccataaagaagtggttggag
gtggagattagccctaatgttagaggtagagttccacagctgctactttcccttaacccc
aaggtcttaaaatatgcagataaaaacttcaaaaatggacaggctgtgactgcaatggtg
acaggctctgacgtcactgagaccaagctctgtctgtccctgacaggagttcattctctg
gagaaaggaaccatcacactaggctgtgtgagaaaggtgattcagttcactggcttgatc
attgcacttccctttggaaagacaggcaaagttagccttttccatgtgagtgattcatat
gctgagcaaccactagaaaacttcagcattggaaaaattgtcaggtgctgtgtcatttcc
aataaagataatacaatagaagtgtccctccggcaatccagggtaaatcccaagagccat
agtaaagtggaagatcctgaaattacatgtctcgataatgttcagaagggtcagtttgtc
aaaggctacgtcaaatccatcacactatcaggcatcttttttgggttgtctgacactgtt
gtgggtcgaattcaactaaaacacatcacatctctcttcgtaccagatcagtctttgtat
acaaaatatatacatgtaggtcagttcctcattgccaaagttctcagtgtaaataaagaa
gaaaaccacgtggagctttcaatccttcctgaagacactgggaagtcgagcattatccca
gagtccctgtgtgtgccacggaatgaagtgaacacaagcaccaagaagctgagaaaacga
aaaagagaaaactctgagagtgtgcaggaagtaaagccaaaaaggaagagaactcgttgc
actgatgataacgatagtggtgttgaagtctattgtcgtgaggaggaagaggaggaggaa
gaaaaaatgtgtgagaagaaatctaagggaagagaggctccgcggctaaaggtttcaacc
agctttatttgggaggagagtttaaatgtgctggatacaatcatgctgaaaccaaaggaa
cagagttctgacactgaggaagaagatgacccacagtccatggtaaagaagcaaacaaag
aagaaaaaggagctggagaagcagagggcagaaaaggaactctccaaactagaaaccgcc
ttgatggatccaaactggcagccccagacagcagatgactttgaccgcttggttcttggc
aaccctgatagctcgattctctggttacagtacatggcctttcatctccaagctacagag
atagagaaagccagagccgtggcagaaagggcactcaaaaccatctctttcagggaggaa
caagaaaagttgaatgtgtgggtagccttgctgaacctggagaacatgtatggcacagag
gaagcactgatgaaagtctttgaaagagccattcagtacaatgagccgctaaaggtcttc
cagcagttggctgacatctacactggttctgagaaatataagcaagctgatgacctctac
aatgcaatgctaaagcgctttcgtcaggaaaagtctgtgtgggtaaaatatgccactttc
ctcctgaaaagaggcctggtagaggcagctcacagactccttccacgtgcccttaagtgc
ctaccggataaagaacatgtggatgtgatttccaagctggcacagctggagttccacttt
ggcgatccagagcatgccaaggccatttttgaaaacacgatgagcacatacccgaaacgc
acagacatctggtcagtctacatagacatgatgataaaacatggcactcagaaggaggtt
cgggatatatttgagcgagtaatacacctaagcctagcagcaaagaagatgaagttcttc
ttcaagcgctacttggaatatgagaaaaaatatggcacaccagaaacggtccaggccgtg
aagtcagcagcactagaatatgtggaatctaagagaagtcttgctgagagctaa
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integrated database retrieval system
