Hemicordylus capensis (graceful crag lizard): 128352282
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Entry
128352282 CDS
T08891
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128352282 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcg03021
]
128352282 (PCF11)
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128352282 (PCF11)
Transcription machinery [BR:
hcg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128352282 (PCF11)
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
128352282 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
128352282
NCBI-ProteinID:
XP_053168702
LinkDB
All DBs
Position
3:13514363..13537179
Genome browser
AA seq
1738 aa
AA seq
DB search
MSGGSGSTSPASGAEGAGGGGGGSSEDACRDYQSSLEDLTFNSKPHINMLTILAEENVPF
AKDIVSLIEAQVAKAPSNEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFVNVFEKVDEN
TRKSLFKLRSTWDEIFPLKKLYALDIRVNSIDPAWPIKPLPPNVNTSSIHVNPKFLNKSP
EEPPAPSSTVCTPAVSCSAVSSSPIIPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLEL
ELEQTKAQLAVSLSVQQTTSSLGQAPLKPHVPQPPHVPVKAPHQISLPPEKTHLSPLHDA
KIPNRDPRLNRTSQHSSHAKDQSHRKDFLMNPVNQPDSKTSKSLQTEKQNTSKQEKLKQG
EKLQKKEFDLDSKTKSPSPLQSKPFHSKDSRNQDSENTRVSEMSKRDPRLKKHLLDKPDG
KDSDTKEKRRSMERKEKEEHRSVGSRNKIINGIVQKQDPSTEESEKTGGKPGRSSTRKRS
RSPRSRSPSSHSPKRRERRSPKRRLRSLSPGPKIGKLRQSGPKQSHVEDFGQGTRDERSS
NKRGLKQEARDSRRSKKLHEDRPQEGMNQHSSKANSEPKENVENWQGSKSSKRWKSGWEE
NKNPQLTEEHQGPCKSPHQRHRDAWATSKGVPSPRTPKQQHRLSVDANLQIPKELTVANK
RELLKKANERLSSGEITQDEFLVLCHQIHQLFQYQEGKHRCNVWDSPLGEKGNLKKKPLL
TDADLIYHEHKAKLKRTQVQHSFPRLNMLDADEMLDFRLSDAFLSGMECEQTKSKCVGQF
GERSRRHSPVGGNRPYSETSPHEGRRRHDEPNTSKGVRDEQRSPFNEPFKRPRYEDTEKQ
FTESPGSRFGAADGKQRFSSLMEERSHFEGSPRHPGTRAGGDGSATHFEGPANTNSRIDG
PQAQTNLRFEGPLGQPAPQFDGLPAESGGNGSLMFDGPSGQMGGGPLRFEGPTGQVGTGT
GIRFEGPMGQQGGVLRFERPTGQSVGGIRFEGNHGQPSAGIRFEGPHGQPSTGMRFDTPH
GQPSAVMRFEGPHGQPSGGVRFEGPHGQPSGGVRFEGPHGQPSGGVRFEGPHDRVGPHGP
PGGGMRFEGPHSQPMGPHGQQGTGLRFEGPHMQPMGPHVQPGANLRFEAPHGQPMGPHGQ
QASGLRFEGPHGQPMGSHGQPGVGPRFEGPHGQPVGPHGQPGIGPRFEGPSVQSGLRFEG
PINQTGPRFDSCQSRFDGQPGQPSLLQRLDGLHGQPGPRFEMGPAQQTPPRFDGPPGQQV
QPRFDTPMPQRFEDPQHQQAARFDMSLGHQGPRIENVANRSASRLETPPYGQAGPYNEPS
NQPYNGPSQGMQFQRAEQMFDNPQGPNFNGLPGTGAQTFPNALNRASGHFFDDKNLQGPQ
YGNFNSMSGNVQQPQQVPVLSMASTQPVPYNPGQPLLPVHAQNPGSFVQSQPGNAPLSYP
DNHLGQLDVNELYSKLLSTGILKVLQPDSASTQVSEVSTQPVPEEEEDDQDQNEDQDVPD
LTSFVIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSR
KVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPA
GVDESCEICQEQFEQYWDEEEEEWHLKNAICVDGKIYHPSCYEDYQNTSSFDSTPSPSKT
PVENPLNIMLNIVKQEIPDSCSSPKVKEEPEEKPDECMEESTSASAEIKTEPEKVESV
NT seq
5217 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcagcggcagcaccagccccgcctcgggggccgagggagccggcggcggc
ggcgggggcagcagcgaggacgcctgccgcgactaccagtcgtcgctggaggacctgacg
ttcaacagcaagccgcacatcaacatgctgaccatcctggccgaggagaacgtgcccttc
gccaaggacatcgtctcgctgatcgaggcgcaagtcgccaaggctccttcaaatgagaaa
cttcctgttatgtaccttatggactccattgtcaagaatgttggaagagaatatcttact
gcgtttactaaaaacctagttgcaacatttgttaatgtgtttgaaaaggtggatgaaaat
actaggaaaagtttatttaaattgcgttccacgtgggatgaaattttccctttgaagaaa
ctctatgctctcgacatccgggtgaattcaatagacccagcttggccaattaagccgcta
ccccctaatgtgaatacttctagcatccatgtgaatcctaaatttttaaataaatcgcct
gaggagcctcctgcaccgagctctacagtctgtacacctgctgtctcgtgttctgctgtg
tcctcttctccaattattcctgaaatacaaaagaatttgactcaagagcagctaataaga
caacagctcctggcaaagcaaaaacagttgttagaacttcaacagaaaaaattagaactg
gagctagagcagaccaaagcacaactggcagtttctcttagtgttcagcaaactacatcc
agcctgggtcaagcacctttgaaaccacatgttccacagccgcctcatgtgccagttaaa
gctccccatcaaattagtctgccacctgaaaaaacccatctgtctcctctccatgatgcc
aaaatacctaatagagatcctcgtcttaatagaacaagtcagcattcttctcatgctaaa
gatcaaagtcataggaaagattttctaatgaatccagttaatcagcctgattctaagaca
agcaaaagtctacagactgaaaaacaaaacacatcaaagcaagaaaaactaaaacagggt
gagaaattgcagaagaaagagtttgatctagattcaaaaacaaaatcgccatctcccttg
caaagcaagccttttcattctaaagattccagaaaccaagactctgaaaacactagagtg
tctgaaatgagcaagagggatccaagattaaaaaagcatcttctggataagccagatggt
aaagacagtgatacaaaagaaaagaggagaagcatggagagaaaagagaaagaagaacat
aggtcagttgggagtagaaacaaaataattaatggcattgtacaaaagcaggacccgagt
acagaggaatcagaaaaaacaggtggaaagccaggaagatcaagtactaggaaaagatca
cgttcgcctagatctcggtcaccatcttcccattctccaaaacggcgagagaggcggtca
cccaaacgaaggctcagaagtctctctcctggacctaaaattgggaaacttcgacagtct
ggacccaaacaatcccatgtagaggactttgggcagggaacacgagatgaaaggagctct
aataagaggggccttaaacaggaagcaagagattcaaggaggtcaaagaaattgcatgaa
gaccgtccacaggaaggaatgaatcaacactcttcaaaagcaaattcggaacccaaagaa
aatgtggaaaactggcaaggttccaagtcaagcaaaagatggaagtctggttgggaggaa
aataaaaacccccagcttactgaagagcatcaaggaccttgtaaatcacctcatcagagg
cacagagatgcctgggcaactagtaaaggagttccatcaccacgcacaccaaagcagcaa
catcgattaagtgtggatgctaatttgcagattcccaaagaattgactgtggcaaacaag
agagagttacttaagaaggccaatgaacgcctgtcatctggtgaaataacgcaagatgag
ttccttgttctgtgtcatcagattcatcagctcttccagtatcaggaaggaaagcacagg
tgcaatgtgtgggatagccctttgggcgaaaagggcaatttgaaaaagaagcccctgttg
actgatgcagatttaatatatcatgaacataaagctaagttaaagagaacacaagttcag
cattcatttccaaggctcaacatgttggatgctgatgaaatgttagacttccgtttgagt
gatgcttttctttctggtatggaatgtgaacaaacaaaaagcaaatgtgtaggacagttt
ggtgaaagatcaaggcgacattcccctgttggtggcaacagaccgtattctgaaacttcg
cctcatgagggccggagaagacatgatgagccaaacacttcgaaaggtgttcgagacgag
cagaggtctccattcaatgaacccttcaagagaccaagatatgaagatacagagaaacag
ttcacagagagtccaggatcccgatttggtgctgctgatggaaagcaaagatttagttca
ttgatggaagagaggtctcattttgagggctctcctagacatcctggcacaagggcaggt
ggagatggatcagcaactcattttgaaggacctgctaatacaaattctagaattgatgga
ccacaggcacagactaatttaaggtttgaggggcccctaggtcagccagcacctcagttt
gatgggctcccagcagagtctggaggaaatggttctttgatgtttgatgggccatcaggg
caaatgggtggtggtcccctgcggtttgaaggtcccacagggcaagtaggtacaggaaca
ggtataaggtttgaggggcctatggggcagcaagggggagtgttgaggtttgagaggcct
acaggccagtcagtgggtggcataagatttgaagggaaccatggccagccatcagctggc
attaggtttgagggacctcatggccaaccatccactgggatgaggtttgatacaccacat
ggtcagccatctgctgtgatgaggtttgaagggccacatggccaaccctcgggtggagtg
aggtttgaagggccacatggccaaccctcaggtggagtgagatttgaagggccgcatggc
caaccctcaggtggagtgaggtttgaaggacctcatgaccgtgtaggaccccatggcccc
ccaggtggtggaatgaggtttgagggaccccatagtcaaccaatggggcctcatggtcaa
caaggaactggtttacggtttgaagggccacatatgcagcccatgggaccccatgttcaa
ccaggagctaatctgcgatttgaagcaccacacggtcagcccatgggtccacatgggcag
caggcaagtggtctaagatttgaagggccacatgggcagcctatggggtcacatggtcaa
cctggagttggacctaggtttgaagggccgcatgggcaacctgttgggccgcatgggcag
ccaggtattggtcccaggtttgagggaccatcggtccagtctggacttagatttgaagga
cctatcaaccaaacaggcccaaggtttgacagctgtcagtcaagatttgatggtcaacct
ggtcagccatcactcttgcaaagactggatggattacatggacagcctggtccaaggttt
gaaatggggcctgctcaacagacaccacctcgatttgatggcccacctggtcagcaggtt
cagccacgttttgatacgcctatgcctcagcggtttgaagatcctcaacatcagcaagca
gcacgatttgatatgtctcttggtcatcaaggtcctagaattgaaaatgtagctaatcgc
tctgcctcaagacttgaaacaccaccttacggacaagctggtccttacaatgaaccttcc
aaccagccctataatgggccatcacaaggaatgcagttccagagagctgagcaaatgttt
gataaccctcaaggaccaaacttcaatgggctacctggaactggagcccaaacttttcct
aatgcacttaatagggcttctggacatttttttgacgacaagaaccttcagggtcctcag
tatggcaactttaacagtatgtcaggaaatgttcagcaacctcagcaggttcctgttctg
tcaatggcatctactcagcctgtaccttacaatccagggcaaccactcttacctgttcat
gcacaaaatcctggaagctttgtccaaagtcaacctgggaatgccccactttcctatcct
gataatcaccttggccaacttgatgtaaatgaattgtactcaaaactgctttcaacggga
atcctcaaggttttacagcctgactcagcttcaactcaagtcagtgaagtttctacacag
ccagttccagaggaggaagaggatgatcaagaccagaatgaggatcaagatgttccagac
ctgactagttttgtgatagaagaactgaaacagcgctatgatagtgttataaaccggctc
tacactggtattcagtgttactcttgtggaatgagattcacaacctcacaaacggatgta
tatgcagaccacttggactggcattatcgccagaaccgcacggaaaaggatgtcagcagg
aaagtcactcacagaagatggtactacagtttaacagactggatagaatttgaagaaatt
gctgatttagaggaacgtgcaaagagccagttctttgaaaaagtgcatgaagaagttgtg
ttaaaaacacaagaagctgctaaggaaaaggagtttcagagtgtccctgcaggcccagct
ggagtagatgagagctgtgaaatttgtcaggagcagtttgagcaatattgggatgaggaa
gaggaggagtggcatttaaaaaatgccatttgtgtagatggaaagatctaccatccatca
tgttacgaagattatcaaaatacctcatcatttgattcaacaccatctcctagcaaaacc
cctgtagaaaatccactaaatattatgttgaacattgtcaagcaagaaataccagactcc
tgtagcagtcccaaagtcaaagaagaacctgaggaaaagcctgatgagtgtatggaagag
agcacatctgcatcggccgaaattaaaacagaacctgaaaaggttgagtcagtttaa
DBGET
integrated database retrieval system
